2024-09-08 11:03:22, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_058218632 3411 bp mRNA linear PLN 19-JUL-2023 DEFINITION PREDICTED: Magnolia sinica protein argonaute PNH1-like (LOC131223284), transcript variant X2, mRNA. ACCESSION XM_058218632 VERSION XM_058218632.1 DBLINK BioProject: PRJNA994101 KEYWORDS RefSeq. SOURCE Magnolia sinica ORGANISM Magnolia sinica Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Magnoliidae; Magnoliales; Magnoliaceae; Magnolia. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_080585) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_029962835.1-RS_2023_07 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 07/13/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3411 /organism="Magnolia sinica" /mol_type="mRNA" /isolate="HGM2019" /db_xref="taxon:86752" /chromosome="13" /tissue_type="leaf" /geo_loc_name="China: Yunnan, Kunming" gene 1..3411 /gene="LOC131223284" /note="protein argonaute PNH1-like; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:131223284" CDS 603..3314 /gene="LOC131223284" /codon_start=1 /product="protein argonaute PNH1-like isoform X2" /protein_id="XP_058074615.1" /db_xref="GeneID:131223284" /translation="
MPHRQMKDLPEKHVVSKKPLQNSMNQQRATSQNLQSFEVSMQDVKKSIGRRRGRGRGKGAQMERIAEAVVDGLDVGPPVSSKGLRFHQRPGYGQVGTKCIVKANHFLAELPDKDLIQYDVTITPEVASRNVNRAIMAQLVKVYRATDLGMRLPAYDGRKSLYTAGLLPFSSKEFYIKIVDEDDGFGIAREREFKVAIKFVARADLHHLRQFLAGKQADAPQEALQVLDIVLRELSSHRYMSIGRSFYSPDIRKPQRLGDGLQSWCGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIEFVVQILGKDALSRPLSDADRIKIKKALRGVKVEVTHRGNVRRKYRISGLTSQPTRELMLGFMSNVQACKIVEGQRYTKRLNEKQITSLLKVTCQRPREQEMDILQTVHQNGYDEDPYAKEFGINITDRLASVEARVLPAPWLKYHDTGKEKDCLPQVGQWNMKNKKMINGSTVNYWACINFSRSVQESTARGFCQELAQMCQVSGMEFSREPVIPIYLARPDQVEKALKYVYNAAMNKLKGKELELLLAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFRISKQYLANVSLKINVKMGGRNTVLLDALSWRIPLVSDIPTIIFGADVTHPETGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWHDPQRGTVAGGMIRELLMSFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHKDRSSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPDLPDNTASRNTCASNGNGSCVRQLPALKEKVKRVMFYC"
misc_feature 1068..1295 /gene="LOC131223284" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 1323..1475 /gene="LOC131223284" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 1476..>1667 /gene="LOC131223284" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature 1839..3191 /gene="LOC131223284" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(2268..2270,2280..2282,2316..2327,2334..2336, 2358..2360,2367..2369,2379..2381,2391..2393) /gene="LOC131223284" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2481..2483,2487..2489,2739..2741,3159..3161) /gene="LOC131223284" /note="active site" /db_xref="CDD:240015" polyA_site 3411 /gene="LOC131223284" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
aagaaactgtcgaaacgtgatgcacctctttctccatctctgctctttttgtttggttgtttgggtaacggcagccgttactagctccatgtatttccctcgttctacaccaacagacccgatattctctaggattgtcgcaataaacgtgaaatatgttgtatgttgtatgagtaccctcccaaaagccactctcctttgctattcttagccatctttctctcccttgcatgcacctgtcatctctctctctctctctctctctctctctctctctctctctctctcatttcctctcttcttcatactttcatagctgttgacagattttctttttaatgctctattcaaaagagatataaatgcattgttttattcaagatgcatcaaccccctcagaccatttcttgcagcattcactcactcaactgatgcgagattatacatcactgtaaaagctttcttttgcttctttaacagctgctgacattcttctacttccttctctaggcaggggtaaatgaagctctagctaatacttagcaaagcgtctgcagagatcctgcttcttggccttctgttttttctgttcttgtatcgaaatgcctcataggcaaatgaaagatctcccagagaagcacgtggtttccaagaaaccactgcagaactccatgaatcagcagagagccacatcccaaaatcttcagagctttgaggtttcaatgcaagatgttaagaagagtattgggaggaggaggggaagaggtagagggaagggcgcccaaatggagaggattgctgaggcggtggtcgatggtctcgatgtggggcctccggtttcaagcaaagggctcagatttcatcaacgtcctgggtatggccaagtgggtaccaagtgcatcgtcaaagccaaccatttccttgctgagttacccgacaaggacttaatccaatatgacgttactattactcctgaagtagcatctcgaaatgtgaacagagctatcatggcccagttagtgaaggtttacagagcaactgatttgggtatgaggcttcctgcttatgatggaaggaagagtctttatacagctgggttgctgccttttagctcaaaggagttctacatcaagattgttgatgaagacgatggatttggcattgcaagagagagggagtttaaggtggcgatcaaatttgtggcccgggctgacctgcatcacttacgtcagtttcttgctggaaagcaagctgatgcgcctcaagaggctctacaggttcttgatattgtcttgagggaactatcaagccataggtatatgtcgattgggaggtctttctattctcctgatatcagaaaaccacagaggctgggtgatgggttacaatcatggtgtggcttctaccaaagcatacgcccaactcaaatgggcttgtctctcaatattgacatgtcttcaacagcttttattgaaccactccctgtaatcgagtttgtagttcaaattttgggtaaagatgcattgtccaggccactctctgatgctgaccgaattaagattaagaaggcccttagaggtgtcaaagtcgaagtcacgcacagaggaaacgtgcggcggaaatatcgaatttcagggttgacatcgcagcccacgagggagctaatgttaggttttatgtccaatgtccaggcttgcaagattgttgaaggacaacggtatacaaaaagattgaacgagaagcagatcacgtccctgcttaaagttacttgccagagacccagggaacaagaaatggacattttgcagacagttcatcagaatggatatgacgaagatccctatgcgaaagagtttgggatcaatatcactgataggcttgcttctgttgaagctcgagttctacctgccccttggctgaaataccatgatactggcaaagaaaaagactgtttgcctcaggtcggtcagtggaatatgaagaacaagaaaatgataaatggaagcactgtaaactactgggcttgtatcaacttttcacggagcgttcaagaaagtactgctcgtggcttttgccaggagctggcgcagatgtgccaagtctctggcatggaatttagccgtgaacctgttattccaatctatttggcaaggcctgatcaagtagagaaggccctgaaatatgtatataatgcagcaatgaacaagctcaaaggaaaagagttggagctacttttagccattcttccagacaacaatggctctttgtatggtgatctcaaacggatttgtgaaacagacctgggattgatatcgcagtgctgtctaacaaagcatgttttcaggatcagcaaacaatacctggcaaatgtatcgcttaaaataaatgtcaaaatgggtggaagaaatacagtgcttttagatgctttaagttggagaattccattagtcagtgatataccgaccatcatatttggagcagatgtaactcatccggagacaggagaagactccagtccatccattgcagccgtcgttgcttcccaagactggcctgaagtcacaaaatatgcggggctggtgtgtgctcaagctcatcgacaggagcttattcaggacttgttcaagacctggcatgatcctcagcgtggtacagttgctggtggtatgataagggagcttttaatgtccttcagaaaggcaaccggacagaaaccattgaggattatcttttacagagatggtgtcagtgaagggcagttctatcaagtcttgctatatgaactagatgccatccggaaggcttgcgcatccttagaacctaattaccagcccccagtaacctttgtggtggtccaaaaacgtcatcacacaagactgtttgcgaataatcataaggacagaagtagcactgacaagagcggaaacatcttacctggcactgtggtggattctaagatctgtcatcctacggagttcgatttctacctttgcagtcatgctggaatccagggaaccagtcgaccagctcactatcatgttctatgggacgagaacaatttcactgcagatgaaatgcagtctttgacaaataacctctgttacacgtatgctcggtgcacacgatctgtttctgtagtgcctcctgcatattatgctcacttagctgcatttcgagctcgattttacatggagccggacctacctgacaacacagcatcaagaaacacatgtgcatcgaatggaaatgggtcatgcgtgagacagctgcctgcattgaaagagaaggtgaagagggtgatgttttactgctgaaaaaaggataaccatgtacatgatgaaagttgtattttatattgtagagctatggtgtattacaatttttgagtgttttaaagttctttcgtagcta
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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