2024-09-08 11:23:13, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_058090419 3794 bp mRNA linear VRT 06-JUL-2023 DEFINITION PREDICTED: Doryrhamphus excisus NRDE-2, necessary for RNA interference, domain containing (nrde2), mRNA. ACCESSION XM_058090419 VERSION XM_058090419.1 DBLINK BioProject: PRJNA990801 KEYWORDS RefSeq. SOURCE Doryrhamphus excisus (bluestripe pipefish) ORGANISM Doryrhamphus excisus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Doryrhamphus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_080478) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030265055.1-RS_2023_07 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 07/03/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3794 /organism="Doryrhamphus excisus" /mol_type="mRNA" /isolate="RoL2022-K1" /isolation_source="wild-caught" /db_xref="taxon:161450" /chromosome="13" /sex="male" /tissue_type="brain and eyes" /dev_stage="adult" /geo_loc_name="Kenya" gene 1..3794 /gene="nrde2" /note="NRDE-2, necessary for RNA interference, domain containing; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:131140207" CDS 37..3579 /gene="nrde2" /codon_start=1 /product="nuclear exosome regulator NRDE2" /protein_id="XP_057946402.1" /db_xref="GeneID:131140207" /translation="
MALFPAFAQVSNDKVDDSSNELNWLNNKSFQTSDALSLHSRFLDNKSDALDRKDLSEIQEDEDSLPSRKKKKKHEKHGKKKKKHKEKNKKYTDSSGSDSEPIFPSDLKRKQEADRPKVTPLATCFSWLDDVPSPTAQPFCVDPKADPANWTYKSLYRGQVARYKRKGRSSLGLDPRRQEVSWEESSKKKDKKKGADRYFSAGCRQLLRSELPLPLLPKVLEGSDVANASVFLSLGGTGGEKKGETGGEAQTSSVNPLGVYDSTTTLWLQGKGKQEEVDHCENNVEAGQESVLMVGRTEEFNRQLREQPADTQLWLNFIRYQDELSATVFEIEEEQRGTDTSERRNKASYKAVLEKKLSIADRAVATNPSCIELQLERLKICQELWEPSVLAKEWKKLVFLHPNSGPLWREYLLFTQSYFSNFSVSKVNSAYGKCLSTLSAVRDGSMVSHPALPGIEEDMLDIFTQQCHFLRQCGHSEKAFSIFQAMIEFTFYKPDSVGGLTTKQQAEFFEPFWDSGEARVGEWGAKGWKAWMVQQERGGWLQPCPEEEEEEEDEEEEVKDRRQPRWTVWLDVETSREAAHWLPWRPDKTKGQSEEDCDDPERQVLFDDIGPSLICLSSSELQLRLLLNFLSFLGFPVDSVLSPGPCQPGLVLEDLSLLTQGHDSQHPLTFHSLPSHGVNSVGHMTTLQGTRKCAGVGKQGEKFITNMFSMLQPVLPVQHRAALSLSRMQYEKLKVLRCMHSNKKRLRSQSKSSKRIAKSLLKEPDNRSSLAMWREFAHLEWILGNLEEARKVFSTATALGGTKRLCSPMLCELCLLWAQLEVEDGASRPGGALSDGAPSPAVCLLTVLAEGNSSSPLSSQFVSPVAILKARKSYEQTLTASLSALDEDLCNPQANRKGQDGVRDEKLSLKGLVGCYALFQYLTMGIQAASTVYIQARERMDGLHRTLTSDNVSHHDAHHSNSQLIVSRLASECETLAVQQASLLKYHMSIDVFPLGTLRDTLTSVLSSWPNSACLWNIYVQVENSYHSAGRARRFFHAVTRGNSSVVPRLFAIVAEQQRKQLVDAAQRSCDKSAALSVLPENGLSNRIRGLFESAIVTKMGAHCPLLWRMYIHYLVSEGKMDKAKGLFYKALQNIPWVKGLYMDAVQLFPDNLQEFIDLMTEKELRLRLPLEELDILLED"
misc_feature 448..>651 /gene="nrde2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature 931..1896 /gene="nrde2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:462472" ORIGIN
attgacgtcattttcctgcgactattggacaacaacatggcgctgtttccagcttttgcacaagtttctaatgacaaggttgacgattcgtccaacgaattgaactggctcaataataagagttttcagaccagtgatgccctctctcttcacagtcgctttttagacaacaaaagtgacgcattagacaggaaagacttaagtgaaatccaagaagatgaagacagtttgccatccagaaaaaagaaaaagaagcatgaaaagcatggaaaaaagaagaaaaaacacaaagaaaagaataaaaagtatacagatagtagtggatcagactctgaaccaatcttcccaagtgatctcaaacggaaacaagaagctgacaggccaaaggttactccattagcgacttgtttctcatggttggacgacgttccgtcgcccacagcacagccattttgtgtcgacccaaaagccgaccccgccaattggacgtataagtctctttacagaggacaagtagcaagatataaaaggaaaggtagatcatcactgggtctggaccctcgcagacaagaagtaagctgggaggagtccagtaagaagaaggacaaaaagaaaggagcagacagatacttctctgcagggtgtcgtcaattactcagatctgagctgcctcttccattattaccaaaagttctggaaggcagcgatgtcgccaatgccagcgtctttctttcactgggtggcactgggggggagaaaaaaggagagactggtggggaagcacagacatcatcagtgaatccgctaggtgtgtacgactccactactaccctctggctgcaggggaagggaaagcaggaggaggtggatcactgtgagaacaatgtggaggctgggcaagaatctgtccttatggttggccggacggaagagtttaacaggcaacttagagaacaaccagcggacacgcagctatggttaaacttcattaggtaccaggatgagttgagtgccaccgtgtttgaaatcgaagaggagcaacggggaacagatacgtccgagcggcgcaacaaagcatcctataaagcagtgctagaaaaaaagcttagcattgcagaccgtgccgtggctactaatcccagctgtatagagctgcagctggagagactcaagatctgccaagagctttgggaaccatcagttctggctaaagagtggaagaagctggtcttcctccacccaaatagtggccctttgtggagggagtatcttctcttcacccagagctatttcagcaacttcagtgtgtcaaaggtcaattctgcttatgggaagtgtctcagcacgctcagcgctgtcagggatggcagcatggtttctcacccggccctgccagggattgaagaggatatgctggatatcttcacccagcagtgtcatttcctccgtcagtgtggtcactccgagaaggcattctccatctttcaagccatgatagaatttacgttttacaaacccgacagtgtaggagggctgaccacaaagcaacaggctgagttctttgagccattctgggacagtggggaggcaagagttggagagtggggcgcaaaaggttggaaggcatggatggtccaacaagagcgaggaggatggttgcagccctgtccagaggaagaagaggaggaggaagatgaagaggaagaggtgaaggaccggaggcagcctcgatggacagtctggctggatgtggagacatctcgtgaagccgctcattggttgccttggaggcctgataaaaccaaggggcaatcagaagaggactgtgacgacccagagagacaggtgttgttcgatgacattggcccctctttaatatgcttgtcctcgtcagagctccagctccgcctccttctcaatttcttgtcattcctggggtttccagtggactctgtgttgtctcctggtccgtgtcagcctggtctggttctagaggacctttcactgctcactcagggtcatgactcccagcatcctctgaccttccacagcctacctagtcacggggtgaactctgtgggtcacatgaccacactccaaggaaccaggaagtgtgcaggtgttggaaagcaaggtgagaagtttataaccaacatgttcagtatgctgcaacctgtccttccggtccaacaccgagcggctttatcgttgagtaggatgcagtatgagaaacttaaggttttgcgttgcatgcacagcaacaaaaagcgtctccgctctcagagcaaaagcagcaagcggattgccaaatcactgctcaaagaaccagacaaccgctcgtctttagcaatgtggcgggagtttgcccacttagagtggatactgggtaacctcgaagaggctcggaaagtgttctccacagccacagcgctaggggggactaaaaggctgtgcagccccatgctctgtgagttgtgtctgctgtgggcccagcttgaggtggaagatggagcaagtaggccaggtggagcgctcagtgatggagctccatcccctgctgtgtgtctattaaccgtactagcagaggggaactcctcatcacctttatcatcacagtttgtctcccccgttgccatcctgaaagccagaaagtcatacgaacaaacactgactgccagtttatcagcattggatgaagacctctgcaatccccaggccaacagaaaaggtcaagatggtgtccgagatgagaagctgagtttaaaaggcctggtaggctgctatgctctgttccaatacctcaccatgggcatccaagcagcgagcacagtctacatccaggccagagagcgtatggacgggctgcaccggacgctaacatcagacaatgtctctcaccatgatgctcaccactccaacagccagctgattgttagcaggttggcttccgagtgtgagacgttagcggtgcagcaggcgtcactgctgaagtaccacatgagcatcgatgtgtttcctctgggaactttgagggacacgctgacctctgtcctttcaagctggccaaatagtgcctgtctctggaacatatatgtacaggtggagaacagttaccacagcgctggtcgggcacgtcgcttctttcacgctgtaaccaggggcaacagcagtgttgtgccacggctctttgctattgttgctgaacaacaaaggaagcaactggtggatgctgcacaaagatcctgtgacaaaagcgccgccttgagtgtcctgccagagaatggtctcagcaatcgtatccgtggcctgtttgaaagtgctatagtgaccaagatgggcgctcactgtcctttactttggaggatgtacattcactacctggtgtcagagggcaaaatggataaagccaagggacttttctacaaagctttacagaatatcccctgggtgaagggtttatatatggatgcagtgcagctgtttcctgacaacctacaagagtttatagatctgatgacggagaaagaactgcgactcaggctgccattagaagaactcgatatactactggaagactgaagcagtcacacacagacattgctcagtggcaaaaagacacttaagtgatttctctgcatggactaagataagtttgtatgtatgatgtctaaaagttgcaaattttcacacaacaattacaagctgatacaatagaatttgtttataatatgtaaaattatgtgactttgaggttttagttatgaaataaaaagtattataatgtgtttctggtg
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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