2024-05-17 11:46:40, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_057162346 906 bp mRNA linear PLN 09-JUN-2023 DEFINITION Penicillium verhagenii uncharacterized protein (N7466_002949), partial mRNA. ACCESSION XM_057162346 VERSION XM_057162346.1 DBLINK BioProject: PRJNA973687 BioSample: SAMN30185379 KEYWORDS RefSeq. SOURCE Penicillium verhagenii ORGANISM Penicillium verhagenii Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Penicillium. REFERENCE 1 (bases 1 to 906) AUTHORS Petersen,C., Sorensen,T., Nielsen,M.R., Sondergaard,T.E., Sorensen,J.L., Fitzpatrick,D.A., Frisvad,J.C. and Nielsen,K.L. TITLE Comparative genomic study of the Penicillium genus elucidates a diverse pangenome and 15 lateral gene transfer events JOURNAL IMA Fungus 14 (1), 3 (2023) PUBMED 36726175 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 906) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (09-JUN-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 906) AUTHORS Petersen,C. TITLE Direct Submission JOURNAL Submitted (12-JAN-2023) Department of Chemistry and Bioscience, Aalborg University, Fredrik Bajers Vej 7H, Aalborg, Nordjylland 9220, Denmark COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_026643167). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..906 /organism="Penicillium verhagenii" /mol_type="mRNA" /strain="IBT 33310" /culture_collection="IBT:33310" /db_xref="taxon:1562060" /chromosome="Unknown" gene <1..>906 /locus_tag="N7466_002949" /db_xref="GeneID:81814114" CDS 1..906 /locus_tag="N7466_002949" /note="C2H2-type zinc finger; Zinc-finger double-stranded RNA-binding; Zinc-finger of C2H2 type" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_057025631.1" /db_xref="GeneID:81814114" /translation="
MACTCGRTFASEKALQQHISDLFKCSFCGTVFAHPGRTNTNPLDTIDPKRAPTPPTDMKPLAITRNSVPDLSPVSHASPSVARNPVPNLSPVSHASPSVARNPVPDLSPVSHASPSVARNPVPNLSPVSHASPSVARRSSGVGSRSFISDDALTYICYDCDRQFASQSALDSHLLYSSAHRSIFYCDECDREFASQSALDSHLLYSSAHRPIFYCDECDREFVSQPALDSHLLYSSAHRPMFYCDECDREFASQPALDGHLFYSSAHRPLTFNCFPCNRSFVNQEALSSHLRNYAAHRSNQ"
misc_feature 139..>420 /locus_tag="N7466_002949" /note="envelope glycoprotein C; Provisional; Region: PHA03269" /db_xref="CDD:165527" misc_feature 469..540 /locus_tag="N7466_002949" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275371" misc_feature 550..630 /locus_tag="N7466_002949" /note="Zinc-finger double-stranded RNA-binding; Region: zf-C2H2_jaz; pfam12171" /db_xref="CDD:432381" misc_feature 556..627 /locus_tag="N7466_002949" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(571..573,577..579,583..585,589..594,601..606, 622..624,658..660,664..666,676..681,688..693,700..702, 745..747,751..753,757..759,763..768,775..780) /locus_tag="N7466_002949" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 643..705 /locus_tag="N7466_002949" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 730..783 /locus_tag="N7466_002949" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 820..873 /locus_tag="N7466_002949" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275371" ORIGIN
atggcgtgtacttgcggtcgaacttttgcatccgaaaaggcacttcagcagcacatttcggacctattcaaatgtagcttctgtggtacggtgtttgcccatccggggcgaactaataccaatcctttggatactattgatcctaaacgagctcctacacctcccaccgatatgaagcctttggccattacaagaaactcagtccccgatctctcacccgtcagtcatgcatctccgagtgttgcaagaaatccagtccccaatctctcacccgtcagtcatgcatctccgagtgttgcaagaaacccagtccccgatctctcacccgtcagtcatgcatctccgagtgttgcaagaaatccagtccccaatctctcacccgtcagtcatgcatctccgagtgttgcaagacgttcaagtggtgtcggcagccgctcatttatcagcgatgatgcccttacttatatctgctatgactgtgatagacagtttgcgagccaatctgccctggacagccatctgctctactcttcggcccataggtcaatattctactgtgatgagtgcgacagagagtttgcgagccaatctgccctggacagccatctgctctactcttcggcccataggccaatattctactgtgatgagtgcgacagagagtttgtaagccaacctgccctggatagccatttgctatactcttcagcccacaggccgatgttttattgtgatgagtgcgaccgagagtttgcaagccagcctgctctggatggccacttgttctattcttcggcccacaggccgctgacatttaattgctttccctgcaatcgaagtttcgtcaaccaggaagcattgagttcccatctgcgcaattatgcggctcataggtcaaatcagtga
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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