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2024-05-05 12:17:43, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_056779310            4453 bp    mRNA    linear   INV 04-JUN-2023
DEFINITION  PREDICTED: Diorhabda sublineata phosphatidylserine synthase
            (LOC130444247), mRNA.
ACCESSION   XM_056779310
VERSION     XM_056779310.1
DBLINK      BioProject: PRJNA976269
KEYWORDS    RefSeq.
SOURCE      Diorhabda sublineata
  ORGANISM  Diorhabda sublineata
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga;
            Cucujiformia; Chrysomeloidea; Chrysomelidae; Galerucinae; Atysites;
            Diorhabda.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_079478) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_026230105.1-RS_2023_05
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 05/30/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4453
                     /organism="Diorhabda sublineata"
                     /mol_type="mRNA"
                     /isolate="icDioSubl1.1"
                     /isolation_source=">200 individuals were collected in
                     Sfax, Tunisia from Tamarix and have been kept in lab
                     culture maintained by Palisade Insectary since 2008."
                     /db_xref="taxon:1163346"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="Whole Body"
                     /dev_stage="adult"
                     /country="Tunisia: Sfax"
                     /collection_date="2019-10-15"
                     /collected_by="Dan Bean, Palisade Insectary, Colorado Dep.
                     Agriculture"
     gene            1..4453
                     /gene="LOC130444247"
                     /note="phosphatidylserine synthase; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 41
                     long SRA reads, 8 Proteins"
                     /db_xref="GeneID:130444247"
     CDS             163..1443
                     /gene="LOC130444247"
                     /codon_start=1
                     /product="phosphatidylserine synthase"
                     /protein_id="XP_056635288.1"
                     /db_xref="GeneID:130444247"
                     /translation="
MKTKQPYSPNQRLRLDSFSTINEKPVDDISLQFFYKPHTITLLLISIAGLIYFAFVRDTDNLENNIWAGILCCCFFFLIISVLAFPNGPFIRPHPAIWRLVFGMSVIYLLVCLFVLFQNYQTVKNILSWLDPSLKDFHLDMDKEYGVNCSDITVERIWGHVDIFALGHYLGWMFKAVLIRHMGILWAISCMWEITELAFAHLLPNFIECWWDALILDVLLCNGFGIWCGLKICKILEMREYKWVGIKDIHSTTGKIKRAMLQFTPESWTSVRWLDPKCSYMRIFALCQLVLFWQASELNTFFLKHVFELPSSHFLVTGRLILIGVIVAPSVRQYYSYTTDTSCKRVGTQCWVYGCIMVTESLICIKHGRKLFEQTQIVNMVVWVLIMFIVSVGVVVGCVMWHKYDPDSSNFTPKKTKIQIQTTKDD"
     misc_feature    439..1266
                     /gene="LOC130444247"
                     /note="Phosphatidyl serine synthase; Region: PSS;
                     pfam03034"
                     /db_xref="CDD:427108"
     polyA_site      4453
                     /gene="LOC130444247"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
ggtagcctcaaattatttttaatcatattgtttataaaattagttataattgtgctatgctgagattaataaacgtaatgtttaaccccgagatgttatataaatttaaaacgaattaacgttatataatcaataaacacgacgttcatttctaaataaaaaatgaagacgaaacaaccgtattctcctaatcaaagattaagacttgatagttttagtactatcaatgaaaaaccggtggacgatatatctttacaatttttctacaaaccacatacgataactcttcttttaatatcgatagcaggtctgatttatttcgctttcgtaagagacaccgataacttggagaacaacatttgggcgggaatattatgttgttgtttcttttttttaatcatatcggtgttggcttttccgaacggaccttttatacgtccgcacccggcaatatggcgtttggtattcggaatgagcgtcatctatctactcgtatgcctattcgtattattccaaaactaccagaccgttaaaaacatcctgtcctggttggatccttcgctaaaggatttccatttggatatggacaaggaatacggtgtaaactgctctgatataacagtggagaggatatgggggcacgtggacatatttgctttgggccattacctcgggtggatgttcaaagcggttttgatccggcacatggggattttgtgggcgataagttgtatgtgggagataacggaattggcgttcgctcatctgctaccgaatttcatcgaatgttggtgggacgctttgattttggacgttttgttgtgtaacggcttcgggatttggtgcggtctgaaaatatgtaagatattggaaatgcgcgaatataaatgggtgggaataaaggatattcacagtacgacggggaagataaaacgcgccatgttgcagtttacccccgagagttggacgtcggtgaggtggttggaccccaagtgttcgtatatgagaatattcgcgttgtgtcagttggtgttgttttggcaggcatcggaattgaatacgttttttttgaaacacgttttcgaactaccctcgtcgcattttttagtgaccggtcggttgattttgattggggtgatcgtggccccatctgtgcggcaatattacagttacacgacggatactagttgtaaaagagtcgggactcagtgctgggtgtacgggtgtattatggtaactgaatctttgatttgtattaaacacggtaggaaattattcgaacagactcaaattgtgaatatggtcgtttgggtgttgataatgtttatcgtttccgttggggtggttgtgggatgtgttatgtggcacaagtacgaccccgattcgtcaaattttacccctaagaaaacgaaaattcaaattcaaacaactaaagacgattagagtttctgttgtgataaaacaaattagataattaactcaatatgttaaaatgacatgctctctaattttgtttcttcattttcgtatattttccagtcccaaatcgacagggtgttttgttatatatattttttaaatatttacttttactttcatctttaacctcgtataatttccacaaataacaatttgaacaaactaattattatcctttattttgacccttcttttccttaactaatgacataaaatcaaaatctatatttttcattattacagttttattaaattttataagggagcttgtaaaaatttataaaaatctcactttcaactttaacctcgtataatttccacaaatatgtaattggaataatcgaatttggtcactaatctaaaaccatctttcttctaactaatcccataatattcaaatcagcacccttactggtttcttagttatttgaaattatacgagagtgtgtgaaagtaagttataacattttgaccttgaacttcaacctcgtataatttccacaaataacaatttgaacaaactaattattatcctttattttgatccttcttttccctaactaatgacataaaatcgaaatctataactttccttgtttggaatttattccaatttatacgagagcatgtcaaaattagtctaaaaaaatttaccttgaacttcaacctcgtataatttctacaaatatttaattggaataatcgaatttggtcactaatctaaaagcatcttccctctaactaatctcataatattcaaatcagcacccttactggtttcttagttattgaaattatacgagagtgtgtgaaagtaaggtataaaattttgaccttgaacttcaacctcgtataatttccacaaataacaatttgaacaaactaattattatcctttattttgatccttcttttccctaactaatgacataaaatcgaaatctataactttccttgtttgagatttattccaatttatacgagagcatgtcaaaattaatcttaaaaattttgaccttgaacttcaacctcgtataatttccacaaatatgtaattggaataatcgaatttggtcactaatctagaagcatctttcctctaactaatctcataatattcaaatcagcacccttactggtttcttagttattgaaattatacgagagtgtgtgaaagtaagttataaaattttgaccttgaacttcaacctcgtataatttccacaaataacaatttgaacaaactaattattatcctttattttgatccttcttttccctaactaatgacataaaatcgaaatctataactttccttgtttgagatttattccaatttatacgagagcatgtcaaaattaatcttaaaaattttgaccttgaacttcaacctcgtataatttccacaaatatgtaattggaataatcgaatttggtcactaatctagaagcatctgtcctctaactaatctcataatattcaaatcagcacccttactggtttcttagttatttgaaattatacgagagtgtgtgaaagtaagttataacattttgaccttgaacttcaacctcgtataatttccataaataacaatttgaacaaactaattattatcctttattttgatccttcttttccctaactaatgacataaaatcgaaatctataactttccttgtttgagatttattccaatttatacaggagcacgtcaaaattagtcttaaaaaatttaccttgaacttcaacctcgtataatttccacagttatgaaattgaaaaaactgaagggggtcactaatttagaagcatatttcctctaactaatctcataatattcaaatcagcacccttactggtttcttagttatttgaaattatacgagagtgtgtgaaagtaagttataacattttgaccttgaacttcaacctcgtataatttccataaataacaatttgaacaaactaattattatcctttattttgatccttcttttccctaactaatgacataaaatcgaaatctataactttccttgtttgagatttattccaatttatacaggagcacgtcaaaattagtcttaaaaaatttaccttgaacttcaacctcgtataatttccacagttatgaaattgaaaaaactgaagggggtcactaatttagaagcatatttcctctaactaatcccataatattcaaatccatacctttcctggttttagagttatttaaaataaaacgagagtatataaaaattagtctcgaaaatttttttgtactttaacctcgtataattttcataaatatgcaattgaggaaaccgaatatggtcactaattcagaagcatctttcttctaacaggtgccataagatttaaatccacatctatccttgtttgggatttattcaaatatatacgagagcatgtcaaaattagtcgtaaaaaatttacggtggactttaaccttttataactttcaaaaacatcaaatttcaaggacaaactgtggtcacttatgtagaattatctttcctctgattaattacccataattcagaaccacaagtttcattgtttcatattttatcgaacttatacgaaggcatataaaaattggtgtaaaaaaatttcaccttgaacttaattttatttgtacaaatataaaatttgaaaaatcgaatatgatcatttatttagatctgttttccctctaatcaacgacataaagtcaaaatatgtatctttaatttttttgaaatttttaagagagaatgtggaaatgagtattaattagtttcaacactaccctgtataataaaattaaaacgtgccataacacaaatttataatctctctataaagtattttgtttttttttggtcgattttttgtatatcattccttatagttgataaaaaattatgtaattgttaccaaagatttaaataaaattttgttgttga
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]