2024-04-29 15:56:13, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_056710749 1032 bp mRNA linear PLN 02-JUN-2023 DEFINITION Penicillium chrysogenum uncharacterized protein (N7489_004997), partial mRNA. ACCESSION XM_056710749 VERSION XM_056710749.1 DBLINK BioProject: PRJNA973687 BioSample: SAMN30185319 KEYWORDS RefSeq. SOURCE Penicillium chrysogenum ORGANISM Penicillium chrysogenum Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Penicillium; Penicillium chrysogenum species complex. REFERENCE 1 (bases 1 to 1032) AUTHORS Petersen,C., Sorensen,T., Nielsen,M.R., Sondergaard,T.E., Sorensen,J.L., Fitzpatrick,D.A., Frisvad,J.C. and Nielsen,K.L. TITLE Comparative genomic study of the Penicillium genus elucidates a diverse pangenome and 15 lateral gene transfer events JOURNAL IMA Fungus 14 (1), 3 (2023) PUBMED 36726175 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 1032) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (01-JUN-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1032) AUTHORS Petersen,C. TITLE Direct Submission JOURNAL Submitted (01-DEC-2022) Department of Chemistry and Bioscience, Aalborg University, Fredrik Bajers Vej 7H, Aalborg, Nordjylland 9220, Denmark COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_026622750). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..1032 /organism="Penicillium chrysogenum" /mol_type="mRNA" /strain="IBT 35668" /culture_collection="IBT:35668" /db_xref="taxon:5076" /chromosome="Unknown" gene <1..>1032 /locus_tag="N7489_004997" /db_xref="GeneID:81449930" CDS 1..1032 /locus_tag="N7489_004997" /note="Ankyrin repeats (3 copies)" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_056569170.1" /db_xref="GeneID:81449930" /translation="
MALSELPTELIRDIADFLDTEKDVLLFAQLSRQFSDILIDYLYARNAKISNASALLWAAKHGYESTARQALANGANPSATNPTNAGNLSMVQFLLNAGGVDINQQNKYLDTPLIAPARDGNDDLVKFLDQPGIDPDMSDRSRIRPPRLFGQTPLSHAAMNGHVNVRRALLATNRVNIDSKDMRGWTPLAYAAAHGQAEAIEALIKVPGIQLKSKTRWGQTPLMLAAMNGHEAVARILIGQESPKGDIERCYGSTALLVAVQHGHQNIAKLLLDNACNPYLSCDMNTTPLCLAINRGQEEIVKWMQQSEHQPKVPLGPAERDRQMRANVEAIFESKRGSGRRPE"
misc_feature 7..>114 /locus_tag="N7489_004997" /note="F-box domain; Region: F-box; pfam00646" /db_xref="CDD:425796" misc_feature 109..417 /locus_tag="N7489_004997" /note="Ankyrin repeats (3 copies); Region: Ank_2; cl39094" /db_xref="CDD:453966" misc_feature 157..243 /locus_tag="N7489_004997" /note="ANK repeat [structural motif]; Region: ANK repeat" /db_xref="CDD:293786" misc_feature order(166..171,178..186,190..195,205..207,214..216, 241..243,247..249,253..258,262..267,277..279,286..288, 316..318,322..324,328..330,340..345,352..360,364..369, 379..381,388..390,415..417) /locus_tag="N7489_004997" /note="oligomer interface [polypeptide binding]; other site" /db_xref="CDD:293786" misc_feature <280..714 /locus_tag="N7489_004997" /note="Ankyrin repeat [Signal transduction mechanisms]; Region: ANKYR; COG0666" /db_xref="CDD:223738" misc_feature 322..417 /locus_tag="N7489_004997" /note="ANK repeat [structural motif]; Region: ANK repeat" /db_xref="CDD:293786" misc_feature order(445..447,451..453,463..468,475..483,487..492, 502..504,511..513,541..543,547..549,553..555,565..570, 577..585,589..594,604..606,613..615,643..645,649..651, 655..657,667..672,679..687,691..696,706..708) /locus_tag="N7489_004997" /note="oligomer interface [polypeptide binding]; other site" /db_xref="CDD:293786" misc_feature 445..543 /locus_tag="N7489_004997" /note="ANK repeat [structural motif]; Region: ANK repeat" /db_xref="CDD:293786" misc_feature 547..645 /locus_tag="N7489_004997" /note="ANK repeat [structural motif]; Region: ANK repeat" /db_xref="CDD:293786" misc_feature 562..834 /locus_tag="N7489_004997" /note="Ankyrin repeats (3 copies); Region: Ank_2; pfam12796" /db_xref="CDD:432791" misc_feature 751..828 /locus_tag="N7489_004997" /note="ANK repeat [structural motif]; Region: ANK repeat" /db_xref="CDD:293786" misc_feature 766..>912 /locus_tag="N7489_004997" /note="Ankyrin repeats (3 copies); Region: Ank_2; pfam12796" /db_xref="CDD:432791" ORIGIN
atggccttatccgaacttccgacagaattgatacgagatattgcggactttttggacacggaaaaagatgtcttgctgttcgctcagctgagtcgtcaattttcggatatcttgatcgactatctttacgctcgcaatgcgaagatatctaatgcatccgccttgctgtgggcagcaaaacacggctatgagtcgaccgcccgacaagccctcgctaatggagccaacccctcagcaaccaaccccacaaacgcaggaaatctaagcatggttcaattccttctaaatgctggaggggtggatatcaaccagcaaaataagtacttggacaccccgcttattgcaccggctagagatggcaacgacgaccttgtaaagtttcttgatcaacccggtatcgaccctgatatgtcggaccgctcccggattcgccccccaaggctgtttgggcaaaccccattatcccatgctgctatgaatggtcacgtcaatgtccggagggctcttcttgctacaaaccgggtcaatatcgactcgaaggatatgcgtggctggacacctctagcatacgcggcagcgcatggacaggcagaagcgatagaagctttgattaaggtgccagggattcaactcaaatctaaaacacgctgggggcaaacaccattgatgctggctgcgatgaatggccacgaggctgtggctaggattctcatcggacaggaatctcccaaaggtgatattgaacgctgttacggatctacagctcttttggttgcggttcagcatggtcaccaaaatatcgctaagctgctcttggataacgcatgcaatccttatctctcttgcgatatgaataccacaccgctatgtttagctatcaaccgcggccaagaagagattgtgaaatggatgcagcagtcagagcaccagccaaaggttccgttaggtcccgcagaacgggacaggcagatgagagcgaatgtggaagctatattcgagtcgaaaaggggcagtggacggcgtcctgagtaa
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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