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2024-04-29 15:56:13, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_056710749            1032 bp    mRNA    linear   PLN 02-JUN-2023
DEFINITION  Penicillium chrysogenum uncharacterized protein (N7489_004997),
            partial mRNA.
ACCESSION   XM_056710749
VERSION     XM_056710749.1
DBLINK      BioProject: PRJNA973687
            BioSample: SAMN30185319
KEYWORDS    RefSeq.
SOURCE      Penicillium chrysogenum
  ORGANISM  Penicillium chrysogenum
            Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina;
            Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae;
            Penicillium; Penicillium chrysogenum species complex.
REFERENCE   1  (bases 1 to 1032)
  AUTHORS   Petersen,C., Sorensen,T., Nielsen,M.R., Sondergaard,T.E.,
            Sorensen,J.L., Fitzpatrick,D.A., Frisvad,J.C. and Nielsen,K.L.
  TITLE     Comparative genomic study of the Penicillium genus elucidates a
            diverse pangenome and 15 lateral gene transfer events
  JOURNAL   IMA Fungus 14 (1), 3 (2023)
   PUBMED   36726175
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1032)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-JUN-2023) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1032)
  AUTHORS   Petersen,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-DEC-2022) Department of Chemistry and Bioscience,
            Aalborg University, Fredrik Bajers Vej 7H, Aalborg, Nordjylland
            9220, Denmark
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NW_026622750).
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..1032
                     /organism="Penicillium chrysogenum"
                     /mol_type="mRNA"
                     /strain="IBT 35668"
                     /culture_collection="IBT:35668"
                     /db_xref="taxon:5076"
                     /chromosome="Unknown"
     gene            <1..>1032
                     /locus_tag="N7489_004997"
                     /db_xref="GeneID:81449930"
     CDS             1..1032
                     /locus_tag="N7489_004997"
                     /note="Ankyrin repeats (3 copies)"
                     /codon_start=1
                     /product="uncharacterized protein"
                     /protein_id="XP_056569170.1"
                     /db_xref="GeneID:81449930"
                     /translation="
MALSELPTELIRDIADFLDTEKDVLLFAQLSRQFSDILIDYLYARNAKISNASALLWAAKHGYESTARQALANGANPSATNPTNAGNLSMVQFLLNAGGVDINQQNKYLDTPLIAPARDGNDDLVKFLDQPGIDPDMSDRSRIRPPRLFGQTPLSHAAMNGHVNVRRALLATNRVNIDSKDMRGWTPLAYAAAHGQAEAIEALIKVPGIQLKSKTRWGQTPLMLAAMNGHEAVARILIGQESPKGDIERCYGSTALLVAVQHGHQNIAKLLLDNACNPYLSCDMNTTPLCLAINRGQEEIVKWMQQSEHQPKVPLGPAERDRQMRANVEAIFESKRGSGRRPE"
     misc_feature    7..>114
                     /locus_tag="N7489_004997"
                     /note="F-box domain; Region: F-box; pfam00646"
                     /db_xref="CDD:425796"
     misc_feature    109..417
                     /locus_tag="N7489_004997"
                     /note="Ankyrin repeats (3 copies); Region: Ank_2; cl39094"
                     /db_xref="CDD:453966"
     misc_feature    157..243
                     /locus_tag="N7489_004997"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    order(166..171,178..186,190..195,205..207,214..216,
                     241..243,247..249,253..258,262..267,277..279,286..288,
                     316..318,322..324,328..330,340..345,352..360,364..369,
                     379..381,388..390,415..417)
                     /locus_tag="N7489_004997"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    <280..714
                     /locus_tag="N7489_004997"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:223738"
     misc_feature    322..417
                     /locus_tag="N7489_004997"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    order(445..447,451..453,463..468,475..483,487..492,
                     502..504,511..513,541..543,547..549,553..555,565..570,
                     577..585,589..594,604..606,613..615,643..645,649..651,
                     655..657,667..672,679..687,691..696,706..708)
                     /locus_tag="N7489_004997"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    445..543
                     /locus_tag="N7489_004997"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    547..645
                     /locus_tag="N7489_004997"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    562..834
                     /locus_tag="N7489_004997"
                     /note="Ankyrin repeats (3 copies); Region: Ank_2;
                     pfam12796"
                     /db_xref="CDD:432791"
     misc_feature    751..828
                     /locus_tag="N7489_004997"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    766..>912
                     /locus_tag="N7489_004997"
                     /note="Ankyrin repeats (3 copies); Region: Ank_2;
                     pfam12796"
                     /db_xref="CDD:432791"
ORIGIN      
atggccttatccgaacttccgacagaattgatacgagatattgcggactttttggacacggaaaaagatgtcttgctgttcgctcagctgagtcgtcaattttcggatatcttgatcgactatctttacgctcgcaatgcgaagatatctaatgcatccgccttgctgtgggcagcaaaacacggctatgagtcgaccgcccgacaagccctcgctaatggagccaacccctcagcaaccaaccccacaaacgcaggaaatctaagcatggttcaattccttctaaatgctggaggggtggatatcaaccagcaaaataagtacttggacaccccgcttattgcaccggctagagatggcaacgacgaccttgtaaagtttcttgatcaacccggtatcgaccctgatatgtcggaccgctcccggattcgccccccaaggctgtttgggcaaaccccattatcccatgctgctatgaatggtcacgtcaatgtccggagggctcttcttgctacaaaccgggtcaatatcgactcgaaggatatgcgtggctggacacctctagcatacgcggcagcgcatggacaggcagaagcgatagaagctttgattaaggtgccagggattcaactcaaatctaaaacacgctgggggcaaacaccattgatgctggctgcgatgaatggccacgaggctgtggctaggattctcatcggacaggaatctcccaaaggtgatattgaacgctgttacggatctacagctcttttggttgcggttcagcatggtcaccaaaatatcgctaagctgctcttggataacgcatgcaatccttatctctcttgcgatatgaataccacaccgctatgtttagctatcaaccgcggccaagaagagattgtgaaatggatgcagcagtcagagcaccagccaaaggttccgttaggtcccgcagaacgggacaggcagatgagagcgaatgtggaagctatattcgagtcgaaaaggggcagtggacggcgtcctgagtaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]