2024-09-08 11:25:46, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_056134340 3497 bp mRNA linear MAM 09-OCT-2023 DEFINITION PREDICTED: Sorex fumeus NRDE-2, necessary for RNA interference, domain containing (NRDE2), mRNA. ACCESSION XM_056134340 VERSION XM_056134340.1 DBLINK BioProject: PRJNA972655 KEYWORDS RefSeq. SOURCE Sorex fumeus (smoky shrew) ORGANISM Sorex fumeus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Soricidae; Soricinae; Sorex. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_026606155) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_029834395.1-RS_2023_10 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 10/04/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3497 /organism="Sorex fumeus" /mol_type="mRNA" /db_xref="taxon:62283" /chromosome="Unknown" gene 1..3497 /gene="NRDE2" /note="NRDE-2, necessary for RNA interference, domain containing; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:130042002" CDS 54..3497 /gene="NRDE2" /codon_start=1 /product="nuclear exosome regulator NRDE2" /protein_id="XP_055990315.1" /db_xref="GeneID:130042002" /translation="
MALFPAFAAVGEAPDGGNSRRELDWLSNPSFCVGRAASPGQPAEDTTATASDRSPPTRSPVKSESSGDSDADRKRKQTSRKKKKEKKRKKQRQHHKRARSRRSASSSSSSDSEPPSDSGKPRQGASADPGRRLVWLEDAQALTSDTFRTDKRPDPANWEYKSLYRGDIARYKRKGDSCLGLNPKKQRVSWEGAPRQKKPAHAQGERYFARRSLGLLSAAGVAVRPRAPEPPAAAPAAFIPVADPEEAAPPVTSWLNPLGIYDPATTQWLQGQGAPSEQSPAVPDAPADPESTALRAKVEDFNRRLRESPRDVQLWMAFVDFQDEAMRRPGLYALEADGEPRQRASLRLVLEKKLAVLERALDSNQGSVELQLARLRVCAELWEPGALAKEWQKLLFLHPNDAALWQKYLLFCQGQFSTFTVSRLLGAYGKCLSTLSAVQDGSILSHPALPGTEDALFGLFLQQCHFLRQAGHTEKAVSLFQAMVDFTFFKPDSVKELPTRGQVEFFEPFWDSGEPRAGEKGARGWRAWMHQQERGGWVIVTPDEEEDEVDDDAPEVRDRTLPRWQLWLAAERSREQKHWRPWRPEKSKKQSEDDCEDPERQVLFDDIGQSLIRLTRPELRFQLVTAFLQFLGVPCGARPPATCLSLALDEGDLFDGSLSDEQPLTAPQPPFSGVGCVGCSDPLGGRRGTRGHGREGEDFIRNLLHLLLPLFAGPERAQLCLAWLRYEVAKVLWCLHTKNKKRLKSRGKNCKKLAKSLLKEPENRNNFCLWRLYAHLEWLLGNTEDARKVFEAALGAAGGRALQDGGVCELGLLYAQLELELELAGDSRGPAAARAVHILTRLTESEPGAPAPGPASAVPVLKARKAYERALEACLPEEAAIRGRLASVAGCFMLFQYLTVGIEAAVRVHDQVKAQLEAAAGATAGSGPEEAASPGRPGPVLEALALLHTNLLRFHMRVGVYPLAPLREALAGALRLYPDNQGLWRAFVQVQNKTHSASRTRRFFDAVTRSTKALEPWLFAIEAEQMRKRLVEMVQRVDGREVHATLPESGLVHRIRGLFESAVRTEAGAQCPLLWRMYLKFLVSLGNKERSKGVFYKALQNCPWAKALYMDAVEYFPDELQEILDLMTEKELRVRLPLEELELLLED"
misc_feature 489..>719 /gene="NRDE2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature 954..1949 /gene="NRDE2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:462472" ORIGIN
gccgctcgccgccgccatttccgccgtgggtcgcggcggcgcggcctgtcgccatggcgctcttcccggccttcgcggccgtcggcgaggctcccgacggcggaaactccaggagagagctggactggctgagcaaccccagcttctgtgtcggaagagccgcgtccccgggccagccagccgaggacaccacagccaccgcctccgaccgctcgccgccgacaagaagtcccgtgaagtccgagtcctcaggtgacagtgacgctgacagaaagcgcaaacagaccagcagaaagaagaagaaagagaagaagcggaagaagcagcgccagcaccacaagagagcccgcagcaggcgctcggccagcagcagcagcagcagcgactcggagccccccagcgactccgggaagcccaggcagggagcctcggccgaccccgggcggcgccttgtgtggctggaggacgcccaggccctgacctcggacaccttccgcacggataagaggccagaccccgccaactgggagtacaagtccctctaccgcggcgacatagccaggtacaagaggaaaggcgactcgtgcctgggcctgaaccccaagaagcagcgcgtgtcctgggagggggccccccgccagaagaagcccgctcacgcgcagggcgagaggtacttcgccaggaggagcttgggcctgctgagcgcggccggcgtggccgtgcgcccccgcgccccggagccccccgccgcggcccccgccgccttcatccccgtggcggaccccgaggaggcggccccacccgtgacctcctggttgaacccgctggggatctacgatccagccaccacgcagtggctgcagggacagggggccccgtcagagcagtccccggcggtgcccgacgccccagcagaccccgagagcacggcactcagggctaaggtggaggacttcaaccgcaggctacgggagagcccgcgcgatgtccagctctggatggccttcgtggatttccaggacgaggcgatgcggcggcctgggctgtacgcgctggaggcggacggggagccccggcagcgggcgtcgctgcggctggtgttggagaagaagctggccgtcctggagcgggcgctggacagcaaccagggcagcgtggagttgcagctggcgcgcctacgcgtgtgcgccgagctctgggagccgggcgccctggccaaggagtggcagaagctcctcttcctgcaccccaacgacgcggccctctggcagaagtacctgctcttctgccagggccagttcagcaccttcaccgtgtccaggctgctgggggcctacggcaagtgcctgagcacgctgtcggccgtgcaggacggcagcatcctgtcccaccctgcgctgcccggcaccgaggacgccctgtttgggctcttccttcagcagtgccacttcctgcgccaggctggccacaccgagaaggctgtgtccctgttccaggctatggtggacttcaccttcttcaagcccgacagcgtgaaggagctgcccacgcggggccaggtggagttcttcgagcccttctgggacagcggcgagccccgggccggggagaagggcgcccgtggctggcgggcgtggatgcaccagcaggaacgtggcggctgggtcatcgtcactccagatgaggaggaggacgaggtggacgacgatgccccggaggtccgagacaggaccctgccccgctggcagctctggctggcggccgagcgctcccgggagcagaagcactggcgcccgtggcggcctgagaagagcaagaagcagagcgaggacgactgtgaggaccccgagaggcaggtgctgttcgacgacatcgggcagtctctgatccgcctgaccaggcccgagctgcgcttccagctggtcactgccttcctgcagttcctgggcgtgccctgcggcgcccgcccgcccgccacctgcctgtccctggcgctggacgagggcgacctctttgacggcagcctctctgacgagcagccgctgacggcgccccagccgcccttctccggcgtgggctgtgtgggctgcagcgacccgctgggcggccggcgggggacccggggccacgggcgggagggcgaggacttcatccgcaacctgctccacctcctgctgccgctcttcgccggccccgagcgggctcagctctgcctcgcctggctgcgctacgaggtggccaaggtcctctggtgcctgcacacgaagaacaagaagaggttgaagtcccgagggaagaactgcaagaagctagccaagagtctcctcaaggagcccgagaaccgcaacaacttctgcctgtggcggctgtacgcgcacctggagtggctgctggggaacacggaggacgcgcgcaaggtgttcgaggcggcgctgggcgcggcgggcggccgggccctgcaggacggtggcgtctgcgagctgggcctgctctacgcgcagctggagctggagctggagctggcaggtgactcccgaggcccggccgcggcccgcgccgtgcacatcctcacccggctgaccgagagcgagcccggcgcgcccgcccccggcccggcctccgccgtccccgtcctgaaggcgcgcaaggcgtacgagcgcgcgctggaggcctgcctgccggaggaggccgccatccggggccgcctggccagcgtcgccggctgcttcatgctcttccagtatctgacggtgggcatcgaggcggccgtgcgggtccacgaccaggtgaaggcgcagctagaggccgccgctggggccaccgcgggcagcggcccagaggaagcggccagccccgggcgccccggccccgtcctcgaggcgctggcgctgctgcacacgaacctgcttcgcttccacatgcgggtgggcgtgtacccgctggcgcccctgcgcgaagccctggccggggccctgaggctctacccggacaaccagggcctctggcgcgccttcgtgcaggtgcagaacaagacccacagcgccagcaggacgcgaaggttcttcgacgccgtcaccaggtccaccaaagccctggagccctggctgtttgccatcgaggccgagcagatgaggaagaggctggtggagatggtgcagagggtggacggcagggaggtgcacgccaccctccctgagagcggcctggtgcaccgcatccggggcctgttcgagagcgccgtgcggacagaggccggcgcccagtgccccctgctctggcggatgtacctgaagttcctggtttccttggggaataaggagagaagcaaaggtgtgttctacaaagccctgcagaactgcccctgggccaaggcgctgtacatggacgcggtggagtacttccccgacgagctgcaggagatcctggacctgatgaccgagaaggagctgcgggtgcgcctgcccctggaggaactggagctcctactcgaggactag
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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