2024-10-18 15:48:53, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_056122750 7350 bp mRNA linear MAM 09-OCT-2023 DEFINITION PREDICTED: Sorex fumeus argonaute RISC component 1 (AGO1), transcript variant X1, mRNA. ACCESSION XM_056122750 VERSION XM_056122750.1 DBLINK BioProject: PRJNA972655 KEYWORDS RefSeq. SOURCE Sorex fumeus (smoky shrew) ORGANISM Sorex fumeus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Soricidae; Soricinae; Sorex. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_026606104) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_029834395.1-RS_2023_10 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 10/04/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7350 /organism="Sorex fumeus" /mol_type="mRNA" /db_xref="taxon:62283" /chromosome="Unknown" gene 1..7350 /gene="AGO1" /note="argonaute RISC component 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 35 Proteins" /db_xref="GeneID:130031412" CDS 216..2789 /gene="AGO1" /codon_start=1 /product="protein argonaute-1 isoform X1" /protein_id="XP_055978725.1" /db_xref="GeneID:130031412" /translation="
MEAGPSGAAAGTYLPPLQQVFQAPRRPGIGTVGKPIKLLANYFEVDIPKIDVYHYEVDIKPDKCPRRVNREVVEYMVQHFKPQIFGDRKPVYDGKKNIYTVTALPIGNERVDFEVTIPGEGKDRIFKVSIKWLAIVSWRMLHEALVSGQIPVPLESVQALDVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
misc_feature 315..707 /gene="AGO1" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 735..887 /gene="AGO1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 888..1250 /gene="AGO1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1044..1046,1089..1091,1131..1133,1143..1145, 1197..1199,1218..1220,1224..1226) /gene="AGO1" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1383..2660 /gene="AGO1" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1794..1796,1806..1808,1842..1853,1860..1862, 1884..1886,1893..1895,1905..1907,1917..1919) /gene="AGO1" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1998..2000,2004..2006,2214..2216,2628..2630) /gene="AGO1" /note="active site" /db_xref="CDD:240015" polyA_site 7350 /gene="AGO1" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
agggagagctgctgcaggctccgcggcggcggcggcggcggcggcggcggcggcggcggcaacggaggctgcgggggcggcggcgcgagcggccgggcttggggggggagccgagcccggcccgagcccaagcagctagagtgcggggtgcttaggcccctcacgcttggattccactgactccgggccgcctgacctccgcacgggtatatgggatggaagcgggaccctcgggagcagctgcgggcacctacctgccccccctgcagcaggtgttccaggcacctcgccggcctggcattggcactgtggggaaaccaatcaagctcctggccaattactttgaggtggacatccctaagattgacgtctaccactacgaggtggatatcaagccagataagtgtcctcgcagagtcaatcgggaagtggtggaatacatggtccaacatttcaagcctcagatctttggtgaccgcaagcccgtgtatgatggaaagaagaacatttacactgttactgcactgcccattggaaatgaacgggttgactttgaggtgactatccccggggaagggaaggatcgaatcttcaaggtgtccatcaagtggctagccattgtgagttggcgaatgctgcatgaggccctagtcagtggccagatccctgttcccctggagtctgtgcaagccctggatgtggccatgaggcacctggcatccatgaggtacacccctgtgggccgctccttcttctcaccgcctgagggctactaccacccgctggggggtgggcgcgaggtctggttcggctttcaccagtctgtgcgccctgccatgtggaagatgatgctcaacattgatgtctcagccactgccttctataaggcacagccagtgatcgagttcatgtgtgaggtgctggacatcaggaacatagacgagcagcccaagcccctcacagactctcagcgtgtgcgattcaccaaggagatcaagggtctgaaggtggaagtgacccactgtgggcagatgaagaggaaataccgagtgtgtaatgttacccgccgccctgctagtcatcaaacgtttcccttgcagctggagagtggacagactgtggagtgcacagtggcacagtatttcaagcagaaatataaccttcagctcaagtatccccacctgccctgcctgcaagttggccaagaacaaaagcatacctacctacccctagaggtctgtaacattgtggctgggcagcgctgcattaagaagctgacagataaccagacatcgaccatgataaaggctacggctaggtcggccccagacagacaagaggaaatcagccgcctgatgaagaacgccagctacaacctggatccctacatccaggagtttgggatcaaagtgaaagatgacatgacggaggtgacagggcgagtgctgccggcgcccatcttgcagtacggcggccggaaccgggccattgctacacccaatcagggagtctgggacatgcgggggaaacagttctacaatgggattgagatcaaagtctgggccatcgcctgcttcgcaccccaaaagcagtgtcgagaagaggtgctcaagaacttcacggaccagcttcggaagatttccaaggatgcaggcatgcctatccagggccagccttgcttctgcaaatacgcacaaggagcagatagcgtggagcccatgttccggcatctcaagaatacctactcagggttgcagctcattatcgtcatccttccagggaagacaccagtgtatgctgaggtgaaacgtgttggagatacgctcttgggaatggctacgcagtgtgtacaagtgaagaatgtggtcaagacctcacctcagactctgtccaatctctgcctcaagatcaatgtcaaacttggtggcattaacaacatcctagtcccacaccagcgctctgccgtctttcaacagccggtgatattcctgggagcagatgttacacacccgccagcaggagatgggaaaaaaccttctatcacagcagtggtaggcagtatggatgctcaccccagccgttactgtgctaccgtgcgggttcagcgaccacggcaggagatcattgaggacttatcctacatggttcgtgagttgctaatccagttctacaagtccactcgcttcaagcctacccgcatcatcttctaccgagatggggttcctgaaggccagcttccccagattctccactatgagctgttggccattcgtgacgcctgcatcaaactggagaaggactaccagcctgggatcacgtatattgtagtgcagaaacgccaccatacccgtcttttttgtgctgacaagaatgagcgtattgggaagagtggtaacatccccgctgggaccactgtggacaccaacatcacccatccttttgagtttgacttctatctctgcagccatgcaggcatccagggcaccagccgaccatcccattactatgttctttgggatgacaaccgtttcacagcggatgagctccaaatcttgacataccagttgtgccacacttatgtacgatgcacacgctccgtttctatcccagcacctgcctactatgcccgtctggtggctttccgggcacgctaccacctggtggacaaggagcatgacagtggagaggggagccacatatcggggcagagcaatgggcgggacccccaggccctggccaaagccgtgcaggttcatcaggatactctgcgcaccatgtacttcgcttgaaggcagaacgctgttacctcactggatagaagaaagcttttcaagccccaagagctgtgccgcccaaatccagagaaagcagggaggaggaaggaggtggggttaaggggagtgcagaaggccttgtttccttctgagaggggtctaaaggatggggaacagggcctgtaagccagaccaccagccagaaatctctgttatccacctcatgccccatgtccctcaccccatcttgtcacatctggccttgaccccactggaccaagaggggcagcactggtgcccaccacacacacaggtgtctcatgtgactcacagtgctaaagactcatgcctgcctgacagcttggacagcttggtaaggttgactctgcagccctgtggacaaaagctggtaggtttgagtttgagactttagatgggaacgtgagggatctgacgcagtggatgggaggagggaaggattttttttaggagccttaaaaggtctagatttgttttagaagaaaaacgaaaccggacccagatcaatattttaggataatagatgttttaatgggttgagaatccagtttataggaagatttttaaagataatggtttgggttgctcctcccccagctgccacatccccagcctttaattccttctctaccttttctatccttccttacacctcctccctgacagacatccagcccctagtaagacttaaggcactatggcacttagctctgaagtgacacgaccctgtcttccttccgcctgctggtgggcaatcagtgccttccctgtaatggtaatgctgcagaactgcgaccttttgtacctttcttttgtggggagcgggtgggggggctgggagaggaggtagatagggaataaatacccctaacggagtaggcctccagccagagtgccagttattttacattcgaaggatttgattttcacattcatcgagttttaagaagatcacaacctcaagatgggtaaaatctgttgacatttgcactttcagacatgtcccgtctcagagctgctgagatgactggccaccggcctttccatgtccttccttctcctccgcctccccagttctggagttcctttcctagcttttctcactcttatctttcccctgatggtcaagtctcttatgtttccatttcttaactgggatatcttttaacaaaactccttaagtctaaaagaaaaagagcaaaagctaaatgttatttttatacaatagcttgagtctattgccaaaatctggaaatccctcctctatgagtttacaactgagaaacattgagccatcagaaggaattatgtacttgacttgttctctggcctggataagcagagggtgtttatctcctccaggtggggctcagtctccatccttcttctgtgcagattatacctttttcttgctacggattccctcctctgcactgccctgcactcttttgtacaagtgcatcttcccttcctctggattgtcctgacactttggctcaccccaaattttagcatgtcctgtggacaggctgagggattttgctgctccctactgcttctgtttacacaaatgaatttttcatggtttcccactagggcatgtgagtgggtggcatgggcttttttttttttaaattggtttccctagatagcaatggggcgtggctgtcttgtgaaactggaaaagtagggggctcaagtgtggtgcctgctggccttgaggcaaggccccctctttccttaactgtttatttttacctaccccagtgcttgggataaaaagttgtaacttcacagtagaaattcctttttttgaggagcctgggctttgatttacctcaatctggtgatgaagccatgacactttagacccagatgaggcgtggaggccagctggaggaagactcatttgaatcttggcctgtgcagttcagtctaccatttcccctcttcagcaacatttgtacagacccagatttgctatgcaaaacagtctatcccaggtttctgttctggttagctactttgttcagagacttcacaatacgtagcacaaacattggtcatggagatggcatcaggactgtttagtaactaactactccttctttcctgctggctacagcatagggtgccccatgggcagagcccagctgaagaacagaatggaaggttcagggaggaggcgactcactggagagcctacatttcttacacaagtgcctaaagagagtgatgccaacactccatctaccctgtccatcgccttcatatgtctactgcatgttcagtcacactgtagggaggggagctttcttgggacaatgagctctgtatgttcttttggggtgcattttggggctgggatcagggcactattcctggagggttcagtcattcaccagcatttgcaaatgtccatagggagctggtggtagccacttcctctcagcaacatgtttgtgttctttcctttttttctctttgcctcactctcttcatttgggttttgagctggaacttgaaacgcatttttaagccctttggcattgcacacttgccattcaagaaataaaggaagagaagcagcttgggcaaggaaatgactgctctgatacttttaatctttgagacttgaaaaatattcttgagtttgaggattattcttgtttgaaagtgttgtgtacagattaagaagtggtatgggcaaaagttttggttttcttgggtttggtttaaatggtgtctcttatttaactatgaagaagttctggagggacccaagcctgatcttcctagacaattttcttgctcccttgattccactttttttgcctgcctttttcttttctctcttttcctggctttctttgtcacttttaaatttactcagcttgcttgctggcctgcaagcctatctgtctgcctatgtgatgatgaattctctgcatggctacaatgatcccactgttagcttgttagctggtaaggttaggctcacctccttggctgcctagaataggttcttcaagaatctattctccaagcctagtgataacttctttggcctgccctcaaggtaatgtacctagctgacaaggtatcagaagggtttctggcagtttccacacctgtcctttccttcacattgggttctcgttgctttttctagatctggttctagttgtcaatggggcctgccttttatgagggtgtcaaaattaatggttatccagggttagagggctagggaatgggagaataagacagtggtgggaagaatttggatgaaagatgaaaaaagggaacactgcttattgatcatatctcaagtccagcctgcgtcattggagatgaggtgcacactgctggcctctggggctggataacttgggctcttgctgggaacttaggcttagaaaaatggtgcaaaagaaggcatctcaaaatatgagacctccccaaaagttcctgattcccacctattagatagatcccctgtggtctgctcttggccaaacaacaatgttcttagttttctttttgtacaaaattccataaatgaggctagcactcaagattggcagccaaggagacacattaacttcttagctggcccgtgggctattactaagtctaagacagtgtttaagatgtgtcatcatgtgtcacaaacaaggatgggagcttcttcctcttcagggtggatagtcatttcaaactagccaaaatctagttgtggaaagtatgttgggaagctcttgttatttatatgtacagcacctaggtcagcccaggatagtgactgggatgtcttccttatagtctgatcatggcagggatatgcaggcactcttcctattgttcttctaagcagactggggtaaagggattctctggtttttctcttgcctccatttactaggtcttgccttctccctgggcagggagagaggccaggttggtgctctccttttattcagttcttacggatttaagactctggctactgttttggagccaagaatgtgagggagggaataggctcaaaacaaaataaaaccagaataatgtagggaacacagatttttcttctttaaaaaagaaaagaggaaaccctccaagaattgtgcaactaaagacaatgtgtcaaatgcactaagtcccctggtgtagtagcaataaggaaaatgaaatgacattcctgtgcacacagtccaacctgatttgtgtgtgatgttgcacttagcagccatttggtgggcatgtgtaactactctgggtttcactttagtttctgaacttttttaatccctccagcatggatggggacatgtccctggagtcccacagctgtacacttgtttgcatttgtttccctttgagacttgtgtttgtgtcctgctttgagctgtaccttgtccggtctattgtaaaattattccagcaaaagtaatgtacagttccttctgaagcaagcatcagcagcagcacaattctgtgttttataaagacaacagtggcttctatttctaaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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