2024-05-05 11:52:11, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_056089301 2703 bp mRNA linear INV 12-MAY-2023 DEFINITION PREDICTED: Argiope bruennichi aggrecan core protein-like (LOC129975983), transcript variant X2, mRNA. ACCESSION XM_056089301 VERSION XM_056089301.1 DBLINK BioProject: PRJNA970801 KEYWORDS RefSeq. SOURCE Argiope bruennichi ORGANISM Argiope bruennichi Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Araneae; Araneomorphae; Entelegynae; Araneoidea; Araneidae; Argiope. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_079157) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_947563725.1-RS_2023_05 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 05/10/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2703 /organism="Argiope bruennichi" /mol_type="mRNA" /db_xref="taxon:94029" /chromosome="7" gene 1..2703 /gene="LOC129975983" /note="aggrecan core protein-like; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:129975983" CDS 103..2550 /gene="LOC129975983" /codon_start=1 /product="aggrecan core protein-like isoform X2" /protein_id="XP_055945276.1" /db_xref="GeneID:129975983" /translation="
MLFVVKEVTIFLFLCTPFLNALSIPSTSDNVNIVKLFSDLCNPNPCQNGGKCLPTRRRYKCICKLPFFGKNCELDPCSENPCYNGGTCIQTGYSFKCKCRSSYTGDICQNDICSLDPCYNGGTCELDGDTYNCKCRFPYSGRNCENERIGTSPDDKTELTNGTTNDYQWSSEFPDILNVTTDTYQWTSNDSSQFPETLNMTTDTYQRTSNDSSEFPDILKVTTDNYQWTSNDSSEFPDILNVTTDNYQWTSNDSSEFPDILNLTTDNYQWTSKDSSEFTDILNVTTHNYQWTSNDSSEFPDILNVTTDTYKWTSNDSSDFPDILNVTKDNYQWTSNDYSEFPDILNMTTDTYQRTSNDSSQFPEILNATTDTYQWTSNDSSQFTETLNMTTDTYQWTSNDSSQFPETLNMTTDNYQWTSNDSSEFPDILNVTTDNYQWTSNDSSEFPDILNVTTDNYQWTSNDSSEFPDILNVTTDNYQWTSKDSSEFTDILNVTTDTYQWTSNDSSEFPDILNVTTHNYQWTSNDSSEFPDILDVTTDTYKWTSNDSSDFPDILNVTKDNYQWTSNDYSEFPDILNMTTDTYQRTSNDSSQFPEILNVTTDTYQWTSNDSSQFPETLNMTTDNYQWTSNDSSEFPDILNVTTDNYQWTSSDSSEFPEIYNGTTGIYQWTSNDSSEFLKVFNETSDYPEDFNITNNPSNVTVDFSVSIYGIKNFTESYDLTTVQPGICIDDYDCVNGGVCRNRKCNCLPNFGGDRCEIIMLCEKLESTCRAMKATCKVVGFNAICDCPEGKIYNPNSGVCEIVTADIQDITAMKK"
misc_feature 223..315 /gene="LOC129975983" /note="EGF-like domain; Region: EGF; pfam00008" /db_xref="CDD:394967" misc_feature 331..420 /gene="LOC129975983" /note="EGF-like domain; Region: EGF; pfam00008" /db_xref="CDD:394967" misc_feature 442..537 /gene="LOC129975983" /note="Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the...; Region: EGF_CA; cd00054" /db_xref="CDD:238011" ORIGIN
gataaatcactggaatgaaaacattgtttcacaagtaatttatgcataaaaagatttatttattgcgaattccgatttaaaacggtttatagaatttttgaaatgttatttgtagtaaaagaagtgactatttttctttttctttgtactccatttcttaatgctttaagtattccaagcacatctgataatgtcaacatagttaagttattctcagatttgtgcaacccaaatccttgtcagaatggtgggaaatgtttaccgacgagaagacgttataaatgtatttgcaaattaccattctttgggaaaaactgcgaattggatccgtgctcggaaaatccatgctacaatggtggaacatgtatacaaactggatactcatttaaatgcaaatgtagatcatcgtacactggagatatttgccaaaatgatatatgctcacttgatccgtgttacaatggtggcacttgtgagttggatggagatacttacaactgtaaatgtcgttttccatattctggtagaaactgtgaaaatgaaaggatcggaacttcaccagacgataaaacagagttgacaaatggcactaccaacgattatcaatggtcatctgaatttccggatatcttaaacgtgactacagacacttatcaatggacatcaaatgattcttcccaatttccggagaccttgaacatgaccacagacacttatcaaaggacatcaaatgactcttctgaatttcctgatatcttgaaagtgactacagacaattatcaatggacatcaaatgattcctcagaatttcctgatatcttgaacgtgactacagacaattatcaatggacatcaaatgattcctcagaatttccagacatcttgaacttgactacagacaattatcaatggacatcaaaggattcctcagaatttactgatatcttgaacgtgactacacacaattatcaatggacatcaaatgattcctcagaatttccggacatcttgaacgtgactacagacacttataaatggacatcaaatgactcatcagattttccagatatcttgaacgtgactaaagacaattatcaatggacatcaaatgattattcagaatttccggatatcttgaacatgactacagacacttatcaacggacatcaaatgattcttctcaatttccggagatcttaaacgcgactacagacacttatcaatggacatcaaatgattcttctcaatttacggagaccttgaacatgactacagacacttatcaatggacatcaaatgattcttcccaatttccggagaccttgaacatgactacagacaattatcaatggacatcaaatgactcttctgaatttcctgatatcttgaacgtgactacagacaattatcaatggacatcaaatgattcctcagaatttcctgatatcttgaacgtgactacagacaattatcaatggacatcaaatgattcctcagaatttccagacatcttgaacgtgactacagacaattatcaatggacatcaaaggattcctcagaatttactgatatcttgaacgttactacagacacttatcaatggacatcgaatgattcttcagaatttccggacatcttgaacgtgactacacacaattatcaatggacatcaaatgattcctcagaatttccggacatcttggacgtgactacagacacttataaatggacatcaaatgactcatcagattttccagatatcttgaacgtgactaaagacaattatcaatggacatcaaatgattattcagaatttccggatatcttgaacatgactacagacacttatcaacggacatcaaatgattcttctcaatttccagagatcttaaacgtgactacagacacttatcaatggacatcaaatgattcttcccaatttccggagaccttgaacatgactacagacaattatcaatggacatcaaatgattcttcagaatttcctgatatcttgaatgtgactacagacaattatcaatggacatctagtgattcttcagaattcccagagatctacaatggaactacaggcatttatcaatggacatcgaatgattcttcagaatttctgaaagtcttcaatgaaacttcagactatccagaagacttcaacataacgaacaatccatcaaacgttactgttgatttcagtgtttccatatatgggatcaaaaatttcacggaaagctatgatctaaccacagttcaaccaggaatttgtattgacgactatgattgtgtgaatggaggtgtttgcagaaatagaaaatgtaactgcctgccaaactttggaggagacagatgtgaaataatcatgctctgcgagaaattagagtccacttgccgtgcaatgaaggcgacttgtaaagttgttggattcaacgcaatatgcgattgtcccgaaggaaaaatatacaatccaaattcaggagtatgtgaaattgtgacagcggatatacaggatataactgcaatgaaaaaataaaactcgatcctgaacggcatagtctatggtttccagtaatgacttttcttatgatatcaacttgcctacttctcattggagtcatctgtctcagttgtcaaaatcagctgttctgtcgataatcagctgttcatatgaattccacaataggac
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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