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2024-05-05 11:52:11, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_056089301            2703 bp    mRNA    linear   INV 12-MAY-2023
DEFINITION  PREDICTED: Argiope bruennichi aggrecan core protein-like
            (LOC129975983), transcript variant X2, mRNA.
ACCESSION   XM_056089301
VERSION     XM_056089301.1
DBLINK      BioProject: PRJNA970801
KEYWORDS    RefSeq.
SOURCE      Argiope bruennichi
  ORGANISM  Argiope bruennichi
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida;
            Araneae; Araneomorphae; Entelegynae; Araneoidea; Araneidae;
            Argiope.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_079157) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_947563725.1-RS_2023_05
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 05/10/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2703
                     /organism="Argiope bruennichi"
                     /mol_type="mRNA"
                     /db_xref="taxon:94029"
                     /chromosome="7"
     gene            1..2703
                     /gene="LOC129975983"
                     /note="aggrecan core protein-like; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     Protein"
                     /db_xref="GeneID:129975983"
     CDS             103..2550
                     /gene="LOC129975983"
                     /codon_start=1
                     /product="aggrecan core protein-like isoform X2"
                     /protein_id="XP_055945276.1"
                     /db_xref="GeneID:129975983"
                     /translation="
MLFVVKEVTIFLFLCTPFLNALSIPSTSDNVNIVKLFSDLCNPNPCQNGGKCLPTRRRYKCICKLPFFGKNCELDPCSENPCYNGGTCIQTGYSFKCKCRSSYTGDICQNDICSLDPCYNGGTCELDGDTYNCKCRFPYSGRNCENERIGTSPDDKTELTNGTTNDYQWSSEFPDILNVTTDTYQWTSNDSSQFPETLNMTTDTYQRTSNDSSEFPDILKVTTDNYQWTSNDSSEFPDILNVTTDNYQWTSNDSSEFPDILNLTTDNYQWTSKDSSEFTDILNVTTHNYQWTSNDSSEFPDILNVTTDTYKWTSNDSSDFPDILNVTKDNYQWTSNDYSEFPDILNMTTDTYQRTSNDSSQFPEILNATTDTYQWTSNDSSQFTETLNMTTDTYQWTSNDSSQFPETLNMTTDNYQWTSNDSSEFPDILNVTTDNYQWTSNDSSEFPDILNVTTDNYQWTSNDSSEFPDILNVTTDNYQWTSKDSSEFTDILNVTTDTYQWTSNDSSEFPDILNVTTHNYQWTSNDSSEFPDILDVTTDTYKWTSNDSSDFPDILNVTKDNYQWTSNDYSEFPDILNMTTDTYQRTSNDSSQFPEILNVTTDTYQWTSNDSSQFPETLNMTTDNYQWTSNDSSEFPDILNVTTDNYQWTSSDSSEFPEIYNGTTGIYQWTSNDSSEFLKVFNETSDYPEDFNITNNPSNVTVDFSVSIYGIKNFTESYDLTTVQPGICIDDYDCVNGGVCRNRKCNCLPNFGGDRCEIIMLCEKLESTCRAMKATCKVVGFNAICDCPEGKIYNPNSGVCEIVTADIQDITAMKK"
     misc_feature    223..315
                     /gene="LOC129975983"
                     /note="EGF-like domain; Region: EGF; pfam00008"
                     /db_xref="CDD:394967"
     misc_feature    331..420
                     /gene="LOC129975983"
                     /note="EGF-like domain; Region: EGF; pfam00008"
                     /db_xref="CDD:394967"
     misc_feature    442..537
                     /gene="LOC129975983"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; Region: EGF_CA; cd00054"
                     /db_xref="CDD:238011"
ORIGIN      
gataaatcactggaatgaaaacattgtttcacaagtaatttatgcataaaaagatttatttattgcgaattccgatttaaaacggtttatagaatttttgaaatgttatttgtagtaaaagaagtgactatttttctttttctttgtactccatttcttaatgctttaagtattccaagcacatctgataatgtcaacatagttaagttattctcagatttgtgcaacccaaatccttgtcagaatggtgggaaatgtttaccgacgagaagacgttataaatgtatttgcaaattaccattctttgggaaaaactgcgaattggatccgtgctcggaaaatccatgctacaatggtggaacatgtatacaaactggatactcatttaaatgcaaatgtagatcatcgtacactggagatatttgccaaaatgatatatgctcacttgatccgtgttacaatggtggcacttgtgagttggatggagatacttacaactgtaaatgtcgttttccatattctggtagaaactgtgaaaatgaaaggatcggaacttcaccagacgataaaacagagttgacaaatggcactaccaacgattatcaatggtcatctgaatttccggatatcttaaacgtgactacagacacttatcaatggacatcaaatgattcttcccaatttccggagaccttgaacatgaccacagacacttatcaaaggacatcaaatgactcttctgaatttcctgatatcttgaaagtgactacagacaattatcaatggacatcaaatgattcctcagaatttcctgatatcttgaacgtgactacagacaattatcaatggacatcaaatgattcctcagaatttccagacatcttgaacttgactacagacaattatcaatggacatcaaaggattcctcagaatttactgatatcttgaacgtgactacacacaattatcaatggacatcaaatgattcctcagaatttccggacatcttgaacgtgactacagacacttataaatggacatcaaatgactcatcagattttccagatatcttgaacgtgactaaagacaattatcaatggacatcaaatgattattcagaatttccggatatcttgaacatgactacagacacttatcaacggacatcaaatgattcttctcaatttccggagatcttaaacgcgactacagacacttatcaatggacatcaaatgattcttctcaatttacggagaccttgaacatgactacagacacttatcaatggacatcaaatgattcttcccaatttccggagaccttgaacatgactacagacaattatcaatggacatcaaatgactcttctgaatttcctgatatcttgaacgtgactacagacaattatcaatggacatcaaatgattcctcagaatttcctgatatcttgaacgtgactacagacaattatcaatggacatcaaatgattcctcagaatttccagacatcttgaacgtgactacagacaattatcaatggacatcaaaggattcctcagaatttactgatatcttgaacgttactacagacacttatcaatggacatcgaatgattcttcagaatttccggacatcttgaacgtgactacacacaattatcaatggacatcaaatgattcctcagaatttccggacatcttggacgtgactacagacacttataaatggacatcaaatgactcatcagattttccagatatcttgaacgtgactaaagacaattatcaatggacatcaaatgattattcagaatttccggatatcttgaacatgactacagacacttatcaacggacatcaaatgattcttctcaatttccagagatcttaaacgtgactacagacacttatcaatggacatcaaatgattcttcccaatttccggagaccttgaacatgactacagacaattatcaatggacatcaaatgattcttcagaatttcctgatatcttgaatgtgactacagacaattatcaatggacatctagtgattcttcagaattcccagagatctacaatggaactacaggcatttatcaatggacatcgaatgattcttcagaatttctgaaagtcttcaatgaaacttcagactatccagaagacttcaacataacgaacaatccatcaaacgttactgttgatttcagtgtttccatatatgggatcaaaaatttcacggaaagctatgatctaaccacagttcaaccaggaatttgtattgacgactatgattgtgtgaatggaggtgtttgcagaaatagaaaatgtaactgcctgccaaactttggaggagacagatgtgaaataatcatgctctgcgagaaattagagtccacttgccgtgcaatgaaggcgacttgtaaagttgttggattcaacgcaatatgcgattgtcccgaaggaaaaatatacaatccaaattcaggagtatgtgaaattgtgacagcggatatacaggatataactgcaatgaaaaaataaaactcgatcctgaacggcatagtctatggtttccagtaatgacttttcttatgatatcaacttgcctacttctcattggagtcatctgtctcagttgtcaaaatcagctgttctgtcgataatcagctgttcatatgaattccacaataggac
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]