2024-04-30 07:05:46, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_055920329 5358 bp mRNA linear VRT 08-MAY-2023 DEFINITION PREDICTED: Salvelinus fontinalis potassium sodium-activated channel subfamily T member 1b (kcnt1b), transcript variant X8, mRNA. ACCESSION XM_055920329 VERSION XM_055920329.1 DBLINK BioProject: PRJNA962531 KEYWORDS RefSeq. SOURCE Salvelinus fontinalis (brook trout) ORGANISM Salvelinus fontinalis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_074668) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_029448725.1-RS_2023_04 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 04/27/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5358 /organism="Salvelinus fontinalis" /mol_type="mRNA" /isolate="EN_2023a" /db_xref="taxon:8038" /chromosome="4" /sex="female" /tissue_type="heart" /dev_stage="smolt" gene 1..5358 /gene="kcnt1b" /note="potassium sodium-activated channel subfamily T member 1b; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:129853866" CDS 301..3825 /gene="kcnt1b" /codon_start=1 /product="potassium channel subfamily T member 1 isoform X8" /protein_id="XP_055776304.1" /db_xref="GeneID:129853866" /translation="
MAGAKLTPSPSEIDPDVKTEATKTPEEPTWVNPLKPIRTMGSFGSDAGQRYQEEYSMDSTNAQVQVEFYVNENTFKERLKLFFIKNQRSSLRIRLFNFSLKLLTCALYVIRVALDDPEQVTGVCVNCQNRTSTATAESTEITDINWELIFWVNRRVPVWAIQVTVALISFLEAMLLTYLSYKGNIWEQMFQISFILEMINTVPFIITIFWPPLRNIFIPVFLNCWLAKCALENMINDLHRAIQRTHSAMFNQVLILICTLLCLVFTGACGIQHLERAGKNLTLFNSLYFCIVTFSTVGYGDVTPHIWPSQLLVVILICVALVVLPLQFEELAYLWMERQKSGGNYSRHRAQTEKHAVLCVSSLKIDLLMDFLNEFYAHPRLQDYYVVILCPTEMDIQVRRILQIPLWSQRVIYLQGSALKDTDLMRAKMDDAEACFILSSRNEVDRTAADHQTILRAWAVKDFAPNCPLYVQILKPENKFHVKFADHVVCEEEFKYAMLALNCVCPATSTLVTLLVHTSRGQEGQLSPEQWQRTYGRCSGNEVYHIRLCDSKFFGEYDGKSFTYASFHAHKKYGVCLIGVKREDNKSILLNPGPRHIMSAPDTCYYINITKEENSAFIFKQEEKDKKGLPVTGLYDAPSRLPVHSIIASMVDQATFYGTVAMDLQNPADPPEDCSKLSLPTENGAGSRRPSIAPVLEIADSSSILPCDLLSDQSEDETNHSDEEGSSVSDFVKGYPPNSPYIGSSPTLCHLLPQKASFCCLRLDKGCRHNSFEDAKAYGFKNKLIIVSAETAGNGLYNFIVPLRAYYRPRKELNPIVLLLDYPPDNHFLEAICCFPMVYFMAGTIDNLDHLLQCGIIYADNLVVVDKESTMSAEEDYMADAKTIVNVQTMFRLFPSLSIITELTHPSNMRFMQFRAKDCYSLALSKLEKIERDKGSNLAFMFRLPFAAGRVFSISMLDTLLYQSFVKDYMIPIARLLLGLDTTPGSGYLCAMKVTEEDLWIRTYGRLFQKLCSSSAEIPIGIYRTESHMFSSTESQVSINVENTGGDDQRSNRRASWKEKTAQRNSTASDQSEHPLLRKKSLQWARRLSRKNTKPPSRTERISQQRLNLYRRSERQELSELVKNRMKHLGLPTVGYEDVANLTASDVMNRVNLGYLQELQGISEHPLREETRTG"
misc_feature <1144..1296 /gene="kcnt1b" /note="Ion channel; Region: Ion_trans_2; pfam07885" /db_xref="CDD:429715" misc_feature 1756..2040 /gene="kcnt1b" /note="Calcium-activated BK potassium channel alpha subunit; Region: BK_channel_a; pfam03493" /db_xref="CDD:427334" ORIGIN
caacagaggcacgcgtctactgggtagaatggtttgatgacgtcttgaggctgagatgcaatggacctcacatctccaaatgatggagtgctgctcaataaaaataagctcccagcactttctcacgtgattgtgtgatgcagaaaggaatggaaagcaagtctacctcggtctatattgccgcagaagtgtgttcaggattcagttttgaatttcagtcgctccgtaggctggtattgacaacagaggggtaacatattggtcattctcggctgggggtaacttgggagagggtgaacgatggcaggcgctaaactcacgccgtctccttcggagatagacccagacgtcaagaccgaggcgacgaaaacaccggaggagccgacttgggtcaacccgttgaagccgatacggacgatgggctcttttgggagtgatgctgggcaaaggtatcaggaggagtacagtatggactctaccaacgcccaggtgcaggtggagttctatgtgaatgaaaacaccttcaaggagaggctcaagctgttcttcatcaaaaaccaaaggtcaagcctgaggatccgtctgtttaacttctccttgaagctgttgacgtgtgccctttacgtcatcagagtggctctggacgaccctgaacaggtcactggagtatgtgtcaactgtcagaatagaacaagcacagccacagcagaatccacagaaatcacagacatcaactgggagttgattttctgggtgaacagaagggttcctgtttgggcgatacaggtgaccgtggccttaatcagtttcctggaggcgatgctcctcacatatctcagctacaaagggaacatctgggagcagatgttccagatctccttcatcctggagatgattaataccgtgccatttataattactatcttctggcctccattgagaaacatcttcatcccagtgtttctcaactgctggttagccaagtgtgccctggagaatatgattaacgatctccatcgtgccatccagaggacccactctgccatgttcaaccaggtcctcatacttatctgcacccttctctgtctggtcttcactggggcgtgtggtatccagcatctagagagggccggaaagaacctgactctgttcaactctctgtatttctgcatcgtcaccttctctacggtgggctatggtgacgtcacacctcatatctggccttctcagctgctggtggtcattctcatctgtgtggccctcgtggtgctcccgctacagtttgaggagttggcctatctgtggatggagcgtcagaagtcaggaggaaactatagcagacaccgggcccagacagagaaacatgcggtcctgtgcgtcagctctctgaagatagacttgctcatggacttcctcaacgagttctacgctcatcctagattacaggactactatgtggtgatcctgtgtcctacagagatggacatccaggtgcgtcgtatcctccagatccccctgtggtcccagagggtcatctatctccagggctcagcactcaaagacacagacctcatgagggccaagatggatgatgcagaagcctgttttatcctgagcagtaggaacgaggtggaccgcactgctgctgaccaccagaccatactgagagcctgggctgtcaaggactttgccccaaactgccccctgtatgtccagattctcaaaccagagaacaaattccatgtaaagtttgctgatcatgtggtctgtgaggaggaattcaagtatgccatgctggccctgaactgtgtatgtccagccacatccacactggtcacgctcctggtgcacacctccagaggacaggagggccagctgtcaccagagcagtggcagaggacgtatggacgttgctctgggaacgaggtctaccacatccgcctgtgcgacagcaagttcttcggggagtacgacgggaagagtttcacctacgcctccttccacgcacacaaaaagtatggtgtgtgtctgatcggggtgaagagggaagacaacaagagcatcctgctgaacccaggtcctcgccacatcatgtccgccccagacacctgctactacatcaacatcaccaaggaagagaactctgcgttcatcttcaaacaggaggagaaagacaagaagggcctgccggtgaccgggctgtatgatgccccctccaggctgcctgtgcacagcatcatcgccagcatggttgatcaggccactttttatgggacggtagccatggacctccagaacccagcggaccccccagaggattgcagcaaactgagcctgcctacagagaacggggctgggagtagacggcccagcattgcccccgtcctggagatagctgactcctcctccattttgccctgcgacctgctcagtgaccaatcagaagacgagaccaaccactcagacgaggagggctcgtcggtgtcagactttgtgaaaggatacccgccaaactccccgtacattggcagctctccaaccctgtgccatctcctacctcagaaagcctcattctgctgccttcggctggacaagggttgcagacacaacagttttgaggatgccaaggcctatggttttaagaacaagctgatcatagtatccgcggagacggcagggaacggcctctataacttcatcgtccctctacgcgcttactaccgccccaggaaagagctcaaccctattgtactgctactagactacccgcctgacaaccacttcctagaagccatctgctgtttcccaatggtctacttcatggccggaaccatagataacctggaccatctgctacagtgtggcatcatctatgctgataacctggtggtggtggacaaggagagcaccatgagtgctgaggaggactatatggcagatgccaagactatcgtcaacgtacagaccatgttcaggctgttccccagtctcagtatcatcaccgagctgacccacccctccaacatgaggtttatgcagttcagggctaaggattgctactccctggctctctccaagctagagaagatagagcgtgataagggttccaacctggccttcatgttccgcctgccgttcgctgcaggcagagtgttcagtatcagtatgctggatacgctgctctaccaatcatttgtaaaggactatatgattcccatagcaagacttttactaggcctggacaccacaccagggtctggttacctatgtgcaatgaaggtgacagaggaggacctgtggatcaggacgtatggcaggttattccaaaagctgtgttcttccagcgcagagattccaataggcatctaccgtacagagtcacacatgttctcctccacagagtctcaagtatccatcaacgtagagaacactggtggtgacgaccagagaagcaatcgtcgcgcgtcgtggaaggagaaaacagctcagcggaactccaccgccagcgaccaatcagaacatccgttgctgaggaagaagagcctccagtgggcgcggcgtctgagccgtaagaacaccaagccaccgagtcgcaccgagcggatctcccagcagcgcctcaacctgtaccggcgctccgagagacaggagctgtctgagctggtcaagaaccgcatgaagcacctaggcttgcccactgtcggatacgaggatgttgctaatcttactgcgagtgatgtcatgaaccgagtaaatctaggatatttacaagagttgcagggaatttcagagcatccgttaagagaagagaccagaacaggttagatggagaatcataatcatacagcactactgcatgactctgtgtgataatgatggcagtgttgggtggcagacaagcagtctttcattctctctgtcctctgcgttgtgtggactgaagtgggagacttaggcctagttcaaattgtacaactgatgtacacaacagttgtttcaaatgcattgtgcatcacttgtacaacctgtgtgaactaggacttattgactgatgatggaacgtgagggacggccagacagactaccaagttactgcagggcagcagagtgtggatacactacagtacggcgggatgggacagagtggagcagaaagcattatgactgtgttgttcggaaggtcaacggtacattactatcaacaaaccaaagttacactgagaatcttgtagaatataaaaaacatttagcattttattagcctaaatacaatatgatttcaaaatattcatcacattttagtccctctgaaagactatcctagattgacgctatattaggaccccttctaatcccacacacccaatgtattttgcttcactctctgattggttgagcctcactttgtttggttgagtctgccctgccggatgccggagcatgttctagttgtgttcgtgggtgtctcaacatttttatatgggggctgagtgtcattggcatggcaaccatggtgccctgtcgccgtgcgtgaccaggccgacgtgtggaatgcgcagaaggtgaatcgatgtggacagtgtctgcatgtctttcttaaactgcgcatggagggatgcgcttgccttgtggcagcatgggcctaccctgtaccagccatgccctgtcagtaacagttagaccttctctctctcctacccaccccgcctggcattataaggggcaaacacaggtgggttttggagaagcagatgcactttaccccccaacccccaagtttgagcctcattctgtcccaggtgcacagtttctcactcatacacgcgaaacaggtaaaacacaatcacttctcactcactctgaatagactttgccccctccctaggcccaggggcaacttgatcctactccaagacaagcacaggacatcaaagtatgccatgttaagggatattcagttacacaccattgattatactgtatttgaatagacattaagaaaatgaacacaggacttatatcatacaggacttataggcttactatatataaataagctttgttcagccagaacggcccttaaaacggctcttactgtatatgcatatgatttattatgtcagtcagccgtttactgaagatcagggaatcctatacttccattttctaaatggaccattagttgtctaatggtgtgtgtaattggtgactatgaggggactggtacagccagagcagctgctaagagctgtccctgcatctgttctgttccagatgagatgaacgaccaccagaacactctgtcctacgttctcatcaacccccctccagataccatgctggagctcaatgacattg
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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