2024-05-20 10:23:00, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_055915826 2978 bp mRNA linear VRT 08-MAY-2023 DEFINITION PREDICTED: Salvelinus fontinalis neurogenic locus notch homolog protein 1-like (LOC129848724), partial mRNA. ACCESSION XM_055915826 VERSION XM_055915826.1 DBLINK BioProject: PRJNA962531 KEYWORDS RefSeq; includes ab initio. SOURCE Salvelinus fontinalis (brook trout) ORGANISM Salvelinus fontinalis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_026601341) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_029448725.1-RS_2023_04 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 04/27/2023 ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## COMPLETENESS: incomplete on the 5' end. FEATURES Location/Qualifiers source 1..2978 /organism="Salvelinus fontinalis" /mol_type="mRNA" /isolate="EN_2023a" /db_xref="taxon:8038" /chromosome="Unknown" /sex="female" /tissue_type="heart" /dev_stage="smolt" gene <1..2978 /gene="LOC129848724" /note="neurogenic locus notch homolog protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:129848724" CDS <1..1374 /gene="LOC129848724" /codon_start=1 /product="neurogenic locus notch homolog protein 1-like" /protein_id="XP_055771801.1" /db_xref="GeneID:129848724" /translation="
SSRYGLSNSYVSDCPCQSSRYGLSNSYVSDCPCQSSRYGLSNSYVSDCPCQSSRYGLSNSYVSDCPCQSSRYGLSNSYVSDCPCQSSRYGLSNSYVSDSPCQSSRYGLSNSYVSDCPCQSSRYGLSNSYVSDCPCQSSRYGLSNSYVSDCPCQSSRYGLSNSYVSDCPCQSSRYGLSNSYVSDCPCQSSRYGLSNSYVSDCPCQSSRYGLSNSYVSDCPCQSSRYGLSNSYVSDCPCQSSRYGLSNSYVSDCPCQSSRYGLSNSYVSDCPCQSSRYGLSNSYVSDCPCQSSRYGLSNSYISDSPCQSSRCIHGLCVPKASSYSCQCAEGYTGQYCDRREEPQACRGHQCRHGECRVTGSGEPSCHCQPGYTGLACATDVTCQGEAVRELLKRQQPMNTCTSTSKIHRVECPRACDGGLCCAPSKSRRRKVFFKCTDGSSFSEEIEITLECGCAMCPL"
polyA_site 2978 /gene="LOC129848724" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
agcagcaggtacggcctgtctaacagctacgtatcagactgcccctgtcagagcagcaggtacggcctgtctaacagctacgtatcagactgcccctgtcagagcagcaggtacggcctgtctaacagctacgtatcagactgcccctgtcagagcagcaggtacggcctgtctaacagctacgtatcagactgcccctgtcagagcagcaggtacggcctgtctaacagctacgtatcagactgcccctgtcagagcagcaggtacggcctgtctaacagctacgtatcagacagcccctgtcagagcagcaggtacggcctgtctaacagctacgtatcagactgcccctgtcagagcagcaggtacggcctgtctaacagctacgtatcagactgcccctgtcagagcagcaggtacggcctgtctaacagctacgtatcagactgcccctgtcagagcagcaggtacggcctgtctaacagctacgtatcagactgcccctgtcagagcagcaggtacggcctgtctaacagctacgtatcagactgcccctgtcagagcagcaggtacggcctgtctaacagctacgtatcagactgcccctgtcagagcagcaggtacggcctgtctaacagctacgtatcagactgcccctgtcagagcagcaggtacggcctgtctaacagctacgtatcagactgcccctgtcagagcagcaggtacggcctgtctaacagctacgtatcagactgcccctgtcagagcagcaggtacggcctgtctaacagctacgtatcagactgcccctgtcagagcagcaggtacggcctgtctaacagctacgtatcagactgcccctgtcagagcagcaggtacggcctgtctaacagctacatatcagacagcccctgtcagagcagcaggtgtatccatgggctgtgtgtgcctaaggcgtcatcttacagttgtcagtgtgctgagggctacacagggcagtactgtgacaggagagaggagccccaagcctgtaggggacaccagtgtagacacggggagtgtagagtcacagggagtggggagccctcctgccactgccagccaggctacactggccttgcctgtgccacagatgtgacgtgccagggagaggcggtgcgtgagctgctgaagcgccagcagcccatgaacacgtgcacctccaccagtaagatccaccgggtggagtgtccccgcgcctgtgacggaggcctctgctgcgccccatctaagagccggaggcggaaagtgttcttcaagtgcaccgacgggagctcgttctctgaggagattgaaatcaccctggagtgtggctgtgccatgtgcccattgtaatatccagctatcgccatggaaacagccacaatcgaaattaaggacctgctgccagagaccaaaaataaaatatattgtaaaataaaacatagaacttatttttattaatggatttttttttaaagaagagacttgatcattttttttaaatgttttatattattgtgtcatatgaagttattttgtatctaaaaaaagaacaaaacagattaacattcctgaaagtatatgaatttatatgtataaatctatataaatgtataaccctagcccatggtttttatttgcccagtgtattattgcatgtgattgtacgtgttgatacgataggggagttttggacactttaaatgtggacgagaagctgaggaagcaattgtacaaaaaggctgtgcagagaaggagaagatggtgctgcatctcctcagacataaaaaagagaaaggcagtctttttcctgaccttcagccatggaggaggcaaacaaggaactgtcccactttgctccccagctttataacggaccttccccaccaccaagcagctgagctcacgctaaaggatctgaactcttatccacagagcttacaaacagtgatttatactttgtgccataggaaaaccttttacattgttactgatttgtatttgtttggtgttccacgtcagagattctagagtacaatgggccaagatggcttctacagtttcttgtcagccagtgaagttctcctgaaattctgtactgtgtgtttctctgtgtttcttacatggttgcatgacagacacagagagtcagaggcagaatgtgaactttgtttttgatacggcgacggaagaccctgccaatatacgatggttccgccatagaaataggatcctagaatcctgcatattttaataatagaaggtattcaatttctatggattctatttctatgacaaagtcatgaagtttgtcctggtgtccaggtatcatcagcaatgtaaggtgttgctgatgtgtctgtgtggtcactgctcagttggaaaaggactttataacacctggcctgggaaatctttgttggactcgaatcataaccgtccgttactactaacactattaatgaagcccattagtaccggattgatatgaagcccatgaagtcatcacaggatgttaggtctcatcacagtcgtccccttatcagtcagaatatatccagtaacattttgttcattttgaatgtattatagtacaacatcaggacactgctgtaatgtaccgtacatttcaaataaagtgttaccaaatatacctcaattgagagtttgtcagtgatcaagttccgtactccccttacccccagtccctcaccctaactactccaataccaccatgcctcaaaacatgacattgaatgcttctgtatgtatggaacgtgtaggctctacaatgtaaatgatctgttgtgagatgtcttgtattctataataataatattatgttggccataatataagttgtgttctccagacagaatttatttctggtaaaacatgaacttgtgagtaatgaataattgtgttgaatgttgaaaataaaactaccgtgaaacgag
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]