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2024-04-28 04:57:53, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_055593903            1876 bp    mRNA    linear   ROD 26-APR-2023
DEFINITION  PREDICTED: Psammomys obesus vimentin (Vim), mRNA.
ACCESSION   XM_055593903
VERSION     XM_055593903.1
DBLINK      BioProject: PRJNA961108
KEYWORDS    RefSeq.
SOURCE      Psammomys obesus (fat sand rat)
  ORGANISM  Psammomys obesus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Gerbillinae; Psammomys.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026596149) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_907164565.1-RS_2023_04
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 04/24/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1876
                     /organism="Psammomys obesus"
                     /mol_type="mRNA"
                     /db_xref="taxon:48139"
                     /chromosome="Unknown"
     gene            1..1876
                     /gene="Vim"
                     /note="vimentin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 45 Proteins"
                     /db_xref="GeneID:129666666"
     CDS             147..1547
                     /gene="Vim"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="XP_055449878.1"
                     /db_xref="GeneID:129666666"
                     /translation="
MSTRSVSSSSYRRMFGGSGTSSRPSSNRSYVTTSTRTYSLGSALRPSTSRSLYSSSPGGAYVTRSSAVRLRSSVPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQEQHVQIDVDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFALEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLPLPNFSSLNLRETNLESLPLVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE"
     polyA_site      1876
                     /gene="Vim"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
gcccttggcggggtccagtcctctgccactcgcgctccgggaccacagagacagcggcgctcccacggttcgcatccaccgtgctctcgctcttctctcggagccagccctcgcagccgcagcagcccagcccatcctccgaagccatgtccaccaggtccgtgtcctcgtcctcctaccgcagaatgttcggtggctccggcacctcgagccggccgagctccaaccggagctacgtgaccacatccacccgcacctacagcctgggcagcgcactgcgccccagcaccagccgcagcctctattcctcgtcccccggcggcgcctatgtgacccgctcctccgccgtgcgcctgcggagcagcgtgccgggtgtgcggctgctgcaggactccgtggacttctcgctggccgacgccatcaacacggagttcaagaacacccgcaccaacgagaaggtggaactgcaggagctgaatgaccgcttcgctaactacatcgacaaggtgcgcttcctggagcagcagaacaagatcctgctggccgagctcgagcagctgaagggccagggcaaatcgcgcctgggcgacctctatgaggaggagatgagggagctgcgccggcaggtggatcagctcaccaacgacaaggcccgcgtcgaggtggagcgggacaacctggcggaggacatcatgaggctgcgggagaaattgcaggaggagatgcttcagagggaagaagcggagagcaccttgcagtccttcagacaggatgttgacaatgcatctctggcccgccttgaccttgaacgtaaggtggaatccttgcaagaggagattgcctttttgaagaaactgcatgatgaagagatccaggagctgcaggcccagattcaggaacagcatgttcagatcgatgtggatgtttccaagcccgacctcactgctgccctgcgtgatgtccgtcagcagtatgaaagtgtggctgccaagaacctccaggaggcagaggaatggtacaagtccaagtttgctgacctctctgaagctgccaaccggaacaatgatgccctgcgccaggcgaagcaggagtcaaatgaataccgaagacaggtgcagtccctcacctgcgaggtggatgcacttaaaggaactaacgagtccctggaacgccagatgcgtgagatggaagagaattttgcccttgaagctgctaactaccaggacactattggccgcctgcaggatgagattcagaacatgaaggaagagatggctcgccaccttcgtgaataccaagacctgctcaatgttaagatggctcttgacattgagattgccacctacaggaagctgctggaaggcgaggagagcaggatttctctgcctcttccaaacttttcttccctgaacctgagagaaactaatctggaatcactccctctggttgacacccactcaaaaagaacacttctgattaagacggttgaaaccagagatggacaggtgatcaatgagacttctcagcatcacgatgaccttgagtagaaactgcacagactcagtgcaacagcgcagtaccagcaagaggaagaagaaaaaaaagaaattgtattttagggaaacagctttcaagtgcctttactgcagtttttcaggagcacaagataaattggggatagaaataagctctagttcataacaactgacacccttaaaagacgtagggtaggtttgccacataatctagtttatgaagaaatcttgtgctagaatactttttaaagtatttttgaataccattaaaactgcttcccctcccccccccagtaaatatctgaccaacttgttactgcttcaataaatcttcagaaata
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]