LOCUS       XM_055542240            6603 bp    mRNA    linear   MAM 25-APR-2023
DEFINITION  PREDICTED: Bubalus carabanensis ATPase copper transporting beta
            (ATP7B), transcript variant X2, mRNA.
ACCESSION   XM_055542240
VERSION     XM_055542240.1
DBLINK      BioProject: PRJNA956113
KEYWORDS    RefSeq.
SOURCE      Bubalus carabanensis (carabao)
  ORGANISM  Bubalus carabanensis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia;
            Pecora; Bovidae; Bovinae; Bubalus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_073635) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_029407905.1-RS_2023_04
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 04/20/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6603
                     /organism="Bubalus carabanensis"
                     /mol_type="mRNA"
                     /isolate="K-KA32"
                     /db_xref="taxon:346063"
                     /chromosome="12"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="heifer"
                     /ecotype="Philippines"
                     /collection_date="2021-10-28"
                     /collected_by="Philippine Carabao Center"
                     /breed="swamp buffalo"
     gene            1..6603
                     /gene="ATP7B"
                     /note="ATPase copper transporting beta; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 Proteins"
                     /db_xref="GeneID:129624395"
     CDS             410..4678
                     /gene="ATP7B"
                     /codon_start=1
                     /product="copper-transporting ATPase 2 isoform X2"
                     /protein_id="XP_055398215.1"
                     /db_xref="GeneID:129624395"
                     /translation="

MKPEEERPITDREKASRRILSKLSQPAMKQSFAFDNNGYEDDLDGMCPSQTATGTISIVGMTCQSCVKSIEGRVSSLKGIVSIKVSLEQGSTEVRYVPSVVSLMQICHQIEDMGFQASVAEGKATSWPSRVSPASEAVVKLRVEGMTCQSCVSSIEGKIGKLQGVVRVRVSLSSQEAVITYQPYLIQPQDLRGHITDMGFEAVIKNKVAPMSLGPIDVRRLQSTLSAAPPAPVNQNDNNSETPGGQGVPLHLRVDGMHCKSCVLNIEDNIGRLPGVQSIHVSLESRTARVQYDPSLVSPGALRRAIEALPPGNFKVSLPNGAEGSGPDSRSPPASSVPCTMMLAIAGMTCKSCVQSIEGLISQRAGVHQISVFLAEGTAVVLYDPSRTHPEELRAAVEDMGFEASILAENCSSNHIGNHSSGSAMGHAAAGAPLPMQGGTPQPGELHTNHIPRQSPKSLPASTTVAPKKCFLQISGMTCASCVSNIERNLQKEPGILSVLVSLMAGKAEVKYNLEAIQPLEIAKLIQDLGFEAAVMEDYTGSDGDLELMITGMTCASCVHNIESKLRRTEGITYASVALATSKAHVKFDPEIIGPRDIVKLIEEIGFRASLAQRIPNTHHLDHKVEIKQWKNSFLCSLVFGIPVMGLMIYMLIPSQEPQSTVLDHNVIPGLSILNLIFFILCTFVQFLGGWYFYVQAYKSLRHRMANMDVLIVLATSVAYIYSLVILVVAVAEKAERSPVTFFDTPPMLFVFIALGRWLEHVVKSKTSEALAKLMSLQATEATVVTLGEDNVIIREEQVPMELVQRGDIIKVVPGGKFPVDGKVLEGNTMADESLITGEAMPVTKKPGSMVIAGSMNAHGSVLITATHVGNDTTLAQIVKLVEEAQMSKAPIQQLADRFSGYFVPFIIIISTVTLVVWIGIGFIDFGVVQKYFPVPSKGISQAEVVLRFAFQTSITVLCIACPCSLGLATPTAVMVGTGVAAQNGILIKGGKPLEMAHKIKTVMFDKTGTITQGVPKVSRVLLLVDVATLPLRKVLAVVGTAEASSEHPLGVAVTRYCKEELGTETLGCCTDFQAVPGCGISCKVSSVESILAQDAATQTFSVLIGNREWMRRNGLTVTSDVLDAMTDHETKGQTAILVAIDGVLCGMIAIADSVKQEAALAVHTLKSMGVDVVLITGDNRKTARAIATQVGINKVFAEVLPSHKVAKVQELQNQGKRVAMVGDGVNDSPALAQADVGIAIGTGTDVAIEAADVVLIRNDLLDVVASIHLSRRTVWRIRLNLVLALIYNLIGIPVAAGVFIPIGVVLQPWMGSAAMAASSVSVVLSSLQLKCYRKPDLARYEAQAHGSMKPLSASQVSVRVGMDDRRRDSPRASAWDQVSYVSQVSLSPLKSDKLSRHSGAADDRGDKWSLLLNDRDEEQGI"

     polyA_site      6603
                     /gene="ATP7B"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

ccgaagccccggctccggcgccccggcccctattctagagccccgctgccggtcggaaaccaatgggaggctcttgcgcttctgggatcgattttccaggtgcggagttcacaaccgcagcagctgcagcgtttctgatccgcggagccctggagtcaggcgcggagcccagagggagctgcgcagagcggacccgacggtgacccccgccacgccgcaccttccaggccggcagtgggcgagcctggggatctgcatctccggcccgggtctacgcggctcgccctggctccttctctcccttggcacacgcccaaggctgaagacagaccgaggccagagcgcaccggtccaggaggtgaccttgggctccgggctgaatcacagaagaaattagttcctccgcgagatgaagccagaggaggagagaccgattacagaccgcgaaaaggccagtcggagaatcctgtctaagctctcccagccagcgatgaagcagagctttgcctttgacaacaatggctacgaggatgacctggatggcatgtgcccctcccagacggccactggcaccatcagcatcgtgggcatgacctgccagtcgtgtgtcaagtccatcgagggcagggtctccagtttgaaaggcattgtgagcattaaggtttccctggagcagggcagcactgaggtgaggtacgtgccctcagtggtaagcctgatgcagatttgccatcagattgaagacatgggcttccaggccagtgtggccgagggaaaggccacctcctggccctccagggtctcacccgcctcggaggctgtggtcaaacttcgggtggagggcatgacctgccagtcctgtgtcagctccatagaaggcaagatcgggaaactgcagggtgtcgtgagggtccgcgtctcgctcagcagccaggaggcagtcatcacttaccagccttaccttatccaaccccaagacctcaggggccacataactgacatgggctttgaagctgtcatcaagaacaaagtggcccccatgagcctgggacccatagacgtcaggcggctccaaagcaccctctcagcagcccctccggctcccgttaatcagaatgacaataactctgagaccccgggtggccagggggtccccctgcacctgagagtggacggaatgcactgtaagtcttgtgtcctgaacattgaagacaacattggccggctccccggggttcagagtattcacgtgtccctggagagcaggactgcccgagtccagtacgatccttctctcgtctccccgggggccctgcggagggccattgaggccctgcctcctgggaactttaaagtctctcttcccaatggggcggaagggagtgggccagactccaggagccccccagcgtccagtgtgccctgtaccatgatgctggccattgccggcatgacctgcaagtcctgcgtccagtccatcgaaggcctgatctcccagagggcgggtgtgcaccagatctcagtctttttggccgaagggactgcagtggttctgtacgatccatctcgaactcacccagaagaactgcgagctgcagtggaggatatgggattcgaggcctccatcctggctgaaaactgttccagcaaccacattggcaaccacagctctgggagtgccatggggcacgcggcagctggcgcacctctgcccatgcagggagggactccccagccaggggagctccatactaatcacatcccccgccagtcgcccaagtccctgccggcctccaccacggtggccccaaagaagtgcttcctacagatctcaggcatgacctgtgcgtcctgtgtgtccaacatagagaggaacctgcagaaagaacctggtatcctgtccgtgctggtttccctgatggcgggaaaggcagaggtaaagtacaacctggaagccatccagcccctggagatagcgaagctcatccaggacctgggctttgaggcagcagtgatggaagactacacgggctcggatggtgacctcgagctgatgatcacggggatgacctgtgcctcctgtgttcacaacatagaatccaaactcaggaggacagaaggcatcacctacgcctctgtggctctcgccaccagcaaagcccacgtgaagtttgatcctgaaattattggtccgcgggatattgttaaactcatcgaggaaattggctttcgtgcctccctggcccagaggatccccaacactcatcacttggaccacaaggtggaaataaagcagtggaagaactctttcctgtgcagcctggtgtttggcatccccgtcatgggtttaatgatctatatgctgatacccagccaggagccccagtcgacggtcctggaccacaatgtcatcccaggactgtccatcctgaatctcatcttctttatcttgtgcacctttgtccagttcctcggtggctggtacttctatgtccaggcctacaaatctctgagacacaggatggccaacatggacgtgctcatcgtgctggccacgagcgtcgcctacatctactccctcgtcatcctggtggtggccgtggccgagaaggccgagaggagccccgtgaccttctttgacacgccccccatgctcttcgtcttcattgccctggggcggtggctggaacacgtggtgaagagcaaaacctcagaagcgcttgccaaactcatgtctctgcaagccacggaagccaccgtcgtgacccttggtgaagacaacgtgatcatcagggaggagcaggtgcccatggagctggtgcaacgaggtgacatcatcaaggtggtccccgggggcaagtttcccgtggacgggaaagtcctagaaggcaacaccatggccgacgagtccctcatcacaggagaggccatgcccgtcaccaagaagcccggaagcatggtaatcgctgggtccatgaacgcccatggctctgtgctcatcactgccacccacgtgggcaatgataccaccttggcccagattgtgaagctagtggaagaggcccagatgtccaaggcacccattcagcaactggctgaccggtttagtggatattttgtcccatttatcatcatcatttcaactgtgacgttggtggtatggattggtatcggttttatcgattttggtgttgttcagaaatactttcctgtccccagcaagggtatctcccaggcagaggtggtcctgcggttcgcgttccagacgtccatcacggtgctctgcatcgcctgcccctgctcgctgggcctggccacgcccacggccgtcatggtgggcaccggggtggccgcccagaacggcatcctcatcaaaggaggcaagcccctggagatggcccacaagataaagaccgtgatgttcgacaaaaccggcaccattacccaaggggtccccaaagtctcgcgagtcctcctgctcgtggacgtggccacgctgcccctgcggaaggtgctcgctgtggtggggaccgcagaggccagcagcgagcaccccctgggcgtggcagtcaccagatactgtaaagaggaactcggcacggagaccctcgggtgctgcacagacttccaggcagtgcccggctgtggaatcagctgcaaagtcagcagcgtggagagcatcctcgcccaagacgcggccacacagaccttctctgtgctgatcggaaaccgggaatggatgaggcgcaacggcctgaccgtcaccagcgacgtccttgacgccatgaccgaccatgagacgaagggccagacggccatcctggtggccatcgatggtgtgctgtgcggtatgatcgccatcgcggactcggtcaagcaggaggccgccctggctgtgcacacgctgaagagcatgggcgtggacgtggtgctcatcaccggggacaaccgcaagacagccagggccatcgccacccaggtcggcatcaacaaagtctttgcagaggtgctgccttctcacaaggtggccaaggtccaggagctgcagaaccaggggaagagagtggccatggtgggtgacggcgtgaacgactccccagccctggcgcaggctgacgtgggcattgccatcggcacgggcactgacgtggccatcgaggcggccgacgtcgtcctcatcaggaatgacctgctcgatgtggtggccagcattcacctctccaggaggaccgtctggagaatacggctcaacctggtgctggcgctgatctacaacctgatcgggatccccgtcgcggcaggtgtcttcatacccattggtgtcgtgctgcagccatggatgggctcggcggccatggcggcctcctccgtgtccgtggtcctctcgtcactgcagctcaagtgctacaggaagccggacctggcgcggtacgaggcgcaggcgcacggcagcatgaagcccctgagcgcgtcccaggtcagcgtgcgcgtcggcatggacgaccgccggcgtgactccccgcgggcctcggcctgggaccaggtcagctacgtcagccaggtgtccctgtcgcccctcaagtccgacaagctgtcccggcacagcggcgcggccgacgacaggggcgacaagtggtctctgctcctgaatgaccgggacgaggagcagggtatctgaaagccgcccccgtggctgaggctcccagccagccgcggcagcagcaggcggccgagcccctccaggcctgggcgaatattctggatcaccctttccctgtgcccagggggcgcgattccccgggtcccacaggctcgggggaaggcgtgcttgctcacgctcgtgggctcatcggacaccttgctgtggcctcaagaagaggagggacgagccctcctcgcatcccctgccttagcacttgtgacacgaccagtctcatcgggtctaacatcttcgctgcgcccctccacagagctcataaaaacttaggggtctggctctttctgacagcacccccgtgcatcgcgaacctgagaccaccgtgtacctcaggcgcccccttgtttctgctggggccctctcttcctcctctgcccttgatggtgggggtgtgacaccctgtcatctgagggcagggctgatatcgtcactttccctctgctgctctccaaggggctcctgtgctcctgcctgaacccctgcccacacgacaaccagagagcctgccacgcttctcctcggagaccagacgtcttggttgcccgcgagccgcttcgccctagagtcccggcttctcacgctcaatccagtgtggttgctgactgtcgctgcctagctgggctgagggtctgagagcctgaggcttgagaaatttggcttcctgtggggtcctgggggaggcacgtggctcaagatcctgcttgcctggtttcaagggttttggttgcatggcctgtggtgtgacagtcccctcacagggtctggtatggggttcaggtctgtgctccccagagccatgcagcccaagtaagaggacaccccagccctccacaagcttcgactcctgcacatggagctggtgccttaggaagggggtgcccaccactcccaagggaactgtttctaacttcagtgaccgttatggttgcaggataatcaaagcaacagcaatgagcctgtggcagaccccaagcttggtggtgattggcagagcctgtaggagtctgcaaatactagccaaaccttagactgagtagagcctgttctcagtttcaagggggaagcccttatcgcacacactttagttatttattgtcagttattttttagggggatataagcactttttatcgcttacctctaatactcacaatgaactagcgaagtagatacaatattgtccacatttcgcaggcgggaaacaggctcagagaggctaggaatcccaccaaggatcacacagccagtgtgcacgccagagcagggatctgaattcacatccgcgggccctgaagtcttttctttaatttggctttaccgtcaatattttgtttgataagaagcaacaaggaaaagtcccttgttcctggaagaacaaagctgccaggtgacgtattcactgaactggcttgaaatgtgactggaaggtcatgtcacattgccttcggatagctccttcccatttgcatataattgagtctgtgcagcgtcttgtcctttaaaatccgtatgcagggtggaggtgtggtttgtttccagtcttccttccccagccctgtcctgcttctgttctcagttgtgtcctttctctgttcccagctgctgctcagggaatgtttcctgtttccatacaagaggctaatcatctaaagaatccaattgtgatcagtttttcaaaaagcttttaggaccctaaatgttatgtgtatagggacatggagatatttatataattgtacagaagataaccttttagatgttcaaaaagtgtcaggaatgttttgttgttgttgttcgtttttttggtcaggaaagaagaattcctatttcaaaaacattccatgctatatttagaataaaatttcatttttttattcatctaaaaa

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