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Previous release (v1)
2026-09-19 13:18:51, GGRNA.v2 : RefSeq release 233 (Jan, 2026)
LOCUS XM_055060962 1677 bp mRNA linear VRT 09-APR-2023
DEFINITION PREDICTED: Poeciliopsis prolifica uncharacterized LOC129379996
(LOC129379996), mRNA.
ACCESSION XM_055060962
VERSION XM_055060962.1
DBLINK BioProject: PRJNA952241
KEYWORDS RefSeq; includes ab initio.
SOURCE Poeciliopsis prolifica (blackstripe livebearer)
ORGANISM Poeciliopsis prolifica
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes;
Poeciliidae; Poeciliinae; Poeciliopsis.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_026562438) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Status :: Full annotation
Annotation Name :: GCF_027474105.1-RS_2023_04
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 10.1
Annotation Method :: Gnomon; cmsearch; tRNAscan-SE
Features Annotated :: Gene; mRNA; CDS; ncRNA
Annotation Date :: 04/07/2023
##Genome-Annotation-Data-END##
##RefSeq-Attributes-START##
ab initio :: 1% of CDS bases
##RefSeq-Attributes-END##
FEATURES Location/Qualifiers
source 1..1677
/organism="Poeciliopsis prolifica"
/mol_type="mRNA"
/strain="line A6"
/db_xref="taxon:188132"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole body"
/dev_stage="adult"
/collection_date="2018-02"
gene 1..1677
/gene="LOC129379996"
/note="uncharacterized LOC129379996; Derived by automated
computational analysis using gene prediction method:
Gnomon. Supporting evidence includes similarity to: 1
Protein"
/db_xref="GeneID:129379996"
CDS 1..948
/gene="LOC129379996"
/codon_start=1
/product="uncharacterized protein LOC129379996"
/protein_id="XP_054916937.1"
/db_xref="GeneID:129379996"
/translation="
MIQKKVSKDKNDLNKEEDHLKNLTTELSKEENELKRKTMEWNKEKNELNKKKEQLSKNTMELNEEEEKLNKRKDELKNLKAELSQEKNVLRKKTIKEIEELNKIKDDLSKKRAELRKTTDELSKEKDELSKEKRELSKVKDKLNKEKDDLHKEKETLNKEKETLSKEKKELSKENDELNTNRDKLSKEKKELNIKKDELSNKRKEVDKEKDELNKKKGDQDKVKAELSRKTEELNNEEKDLNKKQLELNKEKEELGKEKVHLSKEKTKLDKEKQELNKKKVDLNKETAGLNKEKQEFSKNKADVNKKKEELTKRL"
misc_feature <7..945
/gene="LOC129379996"
/note="helix-rich Mycoplasma protein; Region:
Mplasa_alph_rch; TIGR04523"
/db_xref="CDD:275316"
polyA_site 1677
/gene="LOC129379996"
/experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN
atgatacaaaagaaggtgagcaaagataaaaatgacctgaataaagaggaggaccatctaaagaatttaacaacagagctgagcaaagaggaaaatgagctgaagagaaagacaatggagtggaacaaagagaagaatgagctgaacaaaaagaaagaacagctaagcaaaaacacaatggagctgaacgaagaagaagagaagctgaacaaaaggaaagatgagctgaaaaacttgaaagcagaactgagccaagaaaaaaatgtgctgagaaagaaaacgatcaaagagatcgaggagctgaacaaaatcaaagatgatctgagcaaaaagagagcagagctgagaaaaacaacagatgagctgagcaaagagaaagacgaactgagtaaagagaaaagggagctgagcaaagtgaaagacaaactgaacaaagagaaagatgatctgcacaaagagaaagagacactgaacaaagagaaagagacactgagcaaagaaaaaaaggagctgagcaaagaaaatgatgaactgaacacaaaccgagacaagctaagcaaagaaaaaaaggagctgaacataaaaaaagatgaactgagcaataagagaaaggaggtggacaaagaaaaagatgaactgaataaaaagaaaggcgaccaggacaaagtaaaagcagagctgagcaggaagacagaagagttgaacaacgaggaaaaggatctgaataaaaaacaattggagctaaacaaagagaaagaagagctgggcaaagagaaagtgcatctgagcaaagagaaaacgaagctggacaaagagaaacaggagctgaacaaaaagaaagtcgatctgaacaaagagacagcgggtctgaacaaggagaaacaggagtttagtaaaaacaaagcggatgtgaacaaaaagaaagaggagctaacaaagagactgtgaatctgagcaacaaggcggagcagctgaacaaagagacgaaggagctgaatgaaaagaaagcggaactgaacaaactgaaagcggatctgaataaagagaaagtggagctaaatgaaaagaaagtggagctgaataaagagaaagaaaagctgagcgcaataaagaaggagtcggacaatcaatgcaaagagagagatgccctgaagaccttctacgacaacgtcatgaaatttgaacgatttccagtttcagagctgtgtcctctagatatgagaccaaaatgtctggattgcagggtcggatggctttccttcaggggacactgctactggttttcagatagaggtcattctttgaatttctggaacgtgtctcgagacttgtgtcagcatgatagtggatatttggctataattgatgatctggaggagcagaaatttatcgtcaagcatgccaaaccctacgaatctcaacaccaaggatactggatagggttacatcataaactcgccggatggttctgggttgatggacgtaagaacgctcttgacttctggacaaaagaggtcccccattcttcgggagcagctctgcatatgccacaaagaaaagccaaagagagctggagagcagaagacaaggcagtgaagcacagattcatctgtgagcatcctatgactgtttggccctacaactaacactgttctgttaaagcttcagcgaggaata
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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