2024-04-29 15:57:57, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_054946714 1367 bp mRNA linear PLN 05-APR-2023 DEFINITION PREDICTED: Prosopis cineraria 29 kDa ribonucleoprotein A, chloroplastic (LOC129306239), mRNA. ACCESSION XM_054946714 VERSION XM_054946714.1 DBLINK BioProject: PRJNA948452 KEYWORDS RefSeq. SOURCE Prosopis cineraria ORGANISM Prosopis cineraria Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Caesalpinioideae; mimosoid clade; Mimoseae; Prosopis. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_026555334) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_029017545.1-RS_2023_03 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 03/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1367 /organism="Prosopis cineraria" /mol_type="mRNA" /cultivar="Desert tree" /isolate="PC_DT_omini" /db_xref="taxon:364024" /chromosome="Unknown" /tissue_type="leaf" /country="United Arab Emirates: Abu Dhabi" gene 1..1367 /gene="LOC129306239" /note="29 kDa ribonucleoprotein A, chloroplastic; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins" /db_xref="GeneID:129306239" CDS 87..899 /gene="LOC129306239" /codon_start=1 /product="29 kDa ribonucleoprotein A, chloroplastic" /protein_id="XP_054802689.1" /db_xref="GeneID:129306239" /translation="
MSTSAASLALPTFTSRFRPRCFARQALLSSHSSSLRLKSRPFSLSASFLRFHTPSPSRFIPSVALSSEFEQEEIVTDEDEPSYSPDLKLFVGNLPFSVDSAQLAELFESAGTVEMVEVIYDKMTGRSRGFGFVTMSTSEEVEAAAQQFNGYELDGRALRVNFGPPPRKENAPFRGSRGGYASDTGNRVHVGNLAWGVDNLALETLFAEQGKVLEAKVIYDRESGRSRGFGFVTYGSAEEVNGAIESLNGVDLNGRAIRVSLADAKPRRQF"
misc_feature 348..587 /gene="LOC129306239" /note="RNA recognition motif (RRM) superfamily; Region: RRM_SF; cl17169" /db_xref="CDD:450164" misc_feature 645..872 /gene="LOC129306239" /note="RNA recognition motif 2 (RRM2) found in Nicotiana sylvestris chloroplastic 33 kDa ribonucleoprotein (NsCP33) and similar proteins; Region: RRM2_NsCP33_like; cd21608" /db_xref="CDD:410187" polyA_site 1367 /gene="LOC129306239" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
tccatcgaacaggtttatatacgcctctcgccgctgggaagccctcttaatctttgaaagccttatctagttgtagcgccgaaaccatgtctacctctgccgcttccttggcccttcccaccttcacttccagattccggccacgatgctttgccagacaagccttgctctcttcccattcctcttctctccgactaaaatccaggcccttttcattgtctgcctcttttcttcgattccacacgccttcaccctctcgttttatccccagtgttgctctttcttctgagttcgaacaagaagagattgtgactgatgaagacgagcctagctactcccccgacctcaaactcttcgtcggtaatcttcccttcagcgttgacagtgcccagctggctgaattgttcgagagcgctggaactgtcgagatggttgaggtaatttatgataaaatgaccggaagaagcaggggattcggttttgtgaccatgtctacctctgaggaagttgaagcagctgctcaacaattcaatggctatgaacttgatggacgggcgttgagagtaaattttggacctcctccccggaaggagaatgcccctttcagaggttcaagaggcggttatgcttcagatactggaaaccgcgttcatgttggtaatcttgcatggggtgttgataacttggcgcttgagactctgtttgctgagcagggaaaggttttggaagcaaaggtaatttatgacagagaaagtggaaggtcaagaggatttggatttgtgacttacggcagtgctgaagaggttaacggtgctattgagtccttaaacggtgtggacttgaatggcagagctattcgagtgtccttagcagatgctaagccaaggcgtcaattttgaatatttgacctctaataagtagcttgtgaagcaatcgctccatctgggcgtgttgaatgtgcgccgttcattctaattcagtgatgccttggaagattgaattgtggagctttctgccattcttcctcttcaatctatactatgggctcttggtgtctgcttaaaactgctcccgcttgttgggagatttacgtggacgtgggcgcactttattggtgttttcacgcggtttctaaaagcactacctcattatagcttggtagcagtatatgtcatcttgatatgctcatttattgcctgaggatttgattagtgtgtttattgaagttggaatgtattcaccaaatatagcccattttgcttatgcacgtagatgagttctgtggtatcttaactaccagtgatattgtagaaggattttattactgcagagtcgcaaggagaattatttacttctgtatttgtaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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