2024-05-02 19:31:31, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_054672885 5446 bp mRNA linear PRI 11-APR-2023 DEFINITION PREDICTED: Pan troglodytes NLR family pyrin domain containing 12 (NLRP12), transcript variant X1, mRNA. ACCESSION XM_054672885 VERSION XM_054672885.1 DBLINK BioProject: PRJNA945513 KEYWORDS RefSeq. SOURCE Pan troglodytes (chimpanzee) ORGANISM Pan troglodytes Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_072417) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_028858775.1-RS_2023_04 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 04/06/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5446 /organism="Pan troglodytes" /mol_type="mRNA" /isolate="AG18354" /db_xref="taxon:9598" /chromosome="19" /sex="male" /cell_line="AG18354" /cell_type="lymphoblastoid" /tissue_type="blood" gene 1..5446 /gene="NLRP12" /note="NLR family pyrin domain containing 12; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:469002" /db_xref="VGNC:VGNC:11242" CDS 605..3535 /gene="NLRP12" /codon_start=1 /product="NACHT, LRR and PYD domains-containing protein 12 isoform X1" /protein_id="XP_054528860.1" /db_xref="GeneID:469002" /db_xref="VGNC:VGNC:11242" /translation="
MCASSSSTISLPDTPPGGPSSLGNQSTCLLEVSLVTPRKDPQETYRDYVRRKFRLMEDRNARLGECVNLSHRYTRLLLVKEHSNPMQAQQQLLDTGRGHARTVGHQASPIKIETLFEPDEERPEPPRTVVMQGAAGIGKSMLAHKVMLDWADGKLFQGRFDYLFYINCREMNQSATECSMQDLISGCWPEPSAPLQELIRVPERLLFIIDGFDELKPSFHDAQGPWCLCWEEKRPTELLLNSLIRKKLLPELSLLITTRPTALEKLHRLLEHPRHVEILGFSEAERKEYFYKYFHNAEQAGQVFNYVRDNEPLFTMCFVPLVCWVVCTCLQQQLEGGGLLRQTSRTTTAVYMLYLLSLMQPKPGAPRLQPPPNQRGLCSLAADGIWNQKILFEEQDLRKHGLDGEDVSAFLNMNIFQKDMNCERYYSFIHLSFQEFFAAMYYILDEGERGAGPDQDVTRLLTEYAFSERSFLALTSRFLFGLLNEETRSHLEKSLCWKVSPHIKMDLLQWIQSKAQSDGSTLQQGSLEFFSCLYEIQKEFTQQALSHFQVIVVSNIASKMEHMVSSFCLKHCRSAQVLHLYGATYSADGEDRARCSAGTHTLLVQLPERTVLLDAYSEHLAAALCTNPNLIELSLYRNALGSRGVKLLCQGLRHPNCKLQNLRLKRCRISSSACEDLSAALIANKNLTRMDLSGNGVGFPGMMLLCEGLRHPQCRLQMIQLRKCQLESGACQEMASVLGTNPHLVELDLTGNALEDLGLRLLCQGLRHPVCRLRTLWLKICRLTAAACDELASTLSVNQSLRELDLSLNELGDLGVLLLCEGLRHPTCKLQTLRLGICRLGSAACEGLSVVLQANHNLRELDLSFNDLGDWGLWLLAEGLQHPACRLQKLWLDSCGLTAKACKNLYFTLGINQTLTDLYLTNNALGDTGVRLLCKRLSHPGCKLRVLWLFGMDLNKMTHSRLAALRVTKPYLDIGC"
misc_feature 737..952 /gene="NLRP12" /note="Fish-specific NACHT associated domain; Region: FISNA; pfam14484" /db_xref="CDD:433982" misc_feature 986..1495 /gene="NLRP12" /note="NACHT domain; Region: NACHT; pfam05729" /db_xref="CDD:428606" misc_feature 1727..1888 /gene="NLRP12" /note="NOD2 winged helix domain; Region: NOD2_WH; pfam17779" /db_xref="CDD:436037" misc_feature 1892..2233 /gene="NLRP12" /note="NLRC4 helical domain HD2; Region: NLRC4_HD2; pfam17776" /db_xref="CDD:436035" misc_feature 2492..2578 /gene="NLRP12" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 2498..3454 /gene="NLRP12" /note="Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond...; Region: LRR_RI; cd00116" /db_xref="CDD:238064" misc_feature order(2501..2503,2507..2509,2516..2518,2522..2524, 2579..2581,2588..2590,2594..2596,2603..2605,2609..2611, 2663..2665,2672..2674,2678..2680,2687..2689,2750..2752, 2759..2761,2765..2767,2774..2776,2780..2782,2834..2836, 2843..2845,2849..2851,2858..2860,2864..2866,2921..2923, 2930..2932,2936..2938,2945..2947,2951..2953,3005..3007, 3014..3016,3020..3022,3029..3031,3035..3037,3092..3094, 3101..3103,3107..3109,3116..3118,3122..3124,3176..3178, 3185..3187,3191..3193,3200..3202,3206..3208,3263..3265, 3272..3274,3278..3280,3287..3289,3293..3295,3347..3349, 3356..3358,3362..3364,3371..3373,3377..3379,3434..3436, 3443..3445,3449..3451) /gene="NLRP12" /note="Leucine-rich repeats [active]" /db_xref="CDD:238064" misc_feature 2579..2662 /gene="NLRP12" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature order(2597..2602,2771..2773,2942..2944,3026..3028, 3197..3199,3275..3277,3281..3283,3359..3361,3446..3448) /gene="NLRP12" /note="Substrate binding site [chemical binding]; other site" /db_xref="CDD:238064" misc_feature 2663..2749 /gene="NLRP12" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 2750..2833 /gene="NLRP12" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 2834..2920 /gene="NLRP12" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 2921..3004 /gene="NLRP12" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 3005..3091 /gene="NLRP12" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 3092..3175 /gene="NLRP12" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 3263..3346 /gene="NLRP12" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" ORIGIN
aaaaaaaaaaaaagataatggatgagatgtggcccagagctgacaagggaggagtccagactgactcagaacttcccagtcaaaaagattggttggggacgggtgcagtggttcacgcctgtaatcccagtactttggaaggccaaggcaggtggatcacaaggtcaggagttcaagaccagcctggccaacatagtgaaaccccgtctctactaaaaatacaaaaattagccaggcattgtggcacacacctgtaatgccagctactcgtgaggctgaggcaggagaatcgcttgaatccaggaggtggaggttgtggtgagccgagatcatgccactgcattccagcctgggcaacagagcaagactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaagactgattggatggatggaggtgccaatgaccatgagggggacccagggaggagggtgggctacaaggaagaagggatgagctatttcccacacacggcctatgcagtcactactgaacattctggggtgcgggtgaccagggagttatgcaggcatttcgacgtaatcgcagctaatatgacgcggtgctactagccagatgtgtgctagctcatcttccacaatttctcttccagataccccacctggtggcccgtcctcacttgggaaccagtcaacatgccttctggaagtctctcttgtcactccaaggaaagatccccaggaaacctacagggactatgtccgcaggaaattccggctcatggaagaccgcaatgcgcgcctaggggaatgtgtcaacctcagccaccggtacacccggctcctgctggtgaaggagcactcaaaccccatgcaggcccagcagcagcttctggacacaggccggggacacgcgaggaccgtgggacaccaggctagccccatcaagatagagaccctctttgagccagacgaggagcgccccgagccaccgcgcaccgtggtcatgcaaggcgcggcagggataggcaagtccatgctggcacacaaggtgatgctggactgggcggacgggaagctcttccaaggcagatttgattatctcttctacatcaactgcagggagatgaaccagagtgccacggaatgcagcatgcaagacctcatctccggctgctggcccgagcccagcgcgcctctccaggagctcatccgagttcccgagcgcctccttttcatcatcgacggcttcgatgagctcaagccttctttccacgatgctcagggaccctggtgcctctgctgggaggagaaacggcccacggagctgcttcttaacagcttaattcggaagaagctgctccctgagctatctttgctcatcaccacacggcccacggctttggagaagctccaccgtctgctggagcaccccaggcatgtggagatcctgggcttctctgaggcagaaaggaaggaatacttctacaagtatttccacaatgcagagcaggcgggccaagtcttcaattacgtgagggacaacgagcctctcttcaccatgtgcttcgtccccctggtgtgctgggtggtgtgtacctgcctccagcagcagctggagggtggggggctgttgagacagacgtccaggaccaccactgcggtgtacatgctctacctgctgagtctgatgcaacccaagcccggggccccgcgcctccagcccccacccaaccagagagggttgtgctccttggcggcagatgggatctggaatcagaaaatcctatttgaggagcaggacctccggaagcacggcctagacggggaagacgtctctgccttcctcaacatgaacatcttccagaaggacatgaactgtgagaggtactacagcttcatccacttgagtttccaggaattctttgcagctatgtactatatcctggacgagggggagcgcggggcaggcccagaccaggacgtgaccaggctgttgaccgagtacgcgttttctgaaaggagcttcctggcactcaccagccgcttcctgtttggactcctgaacgaggagaccaggagccacctggagaagagtctctgctggaaggtctcgccgcacatcaagatggacctgttgcagtggatccaaagcaaagctcagagcgacggctccaccctgcagcagggctccttggagttcttcagctgcttgtacgagatccagaaggagtttacccagcaggccctgagccacttccaggtgatcgtggtcagcaacattgcctccaagatggagcacatggtctcctcgttctgtctgaagcactgcaggagcgcccaggtgctgcacttgtatggcgccacctacagcgcggacggggaagaccgcgcgaggtgctccgcaggaacgcacacgctgttggtgcagctaccagagaggactgttctgctggacgcctacagtgaacatctggcagcggccctgtgcaccaatccaaacctgatagagctgtctctgtaccgaaatgccctgggcagccggggggtgaagctgctctgtcaaggactcagacaccccaactgcaaacttcagaacctgaggctgaagaggtgccgcatctccagctcagcctgcgaggacctctctgcagctctcatagccaataagaatttgacaaggatggatctcagtggcaacggcgttggattcccaggcatgatgctgctttgtgagggcctgcggcatccccagtgcaggctgcagatgattcagttgaggaagtgtcagctggagtccggggcttgtcaggagatggcttctgtgctcggcaccaacccacatctggttgagttggacctgacaggaaatgcactggaggatttgggcctgaggttactatgccagggactgaggcacccagtctgcagactacggactttgtggctgaagatctgccgcctcactgctgctgcctgtgacgagctggcctcaactctcagtgtgaaccagagcctgagagagctggacctgagcctgaatgagctgggggacctcggggtgctgctgctgtgtgagggcctcaggcatcccacgtgcaagctccagaccctccggttgggcatctgccggctgggctctgccgcctgtgagggtctttctgtggtgctccaggccaaccacaacctccgggagctggacttgagtttcaacgacctgggagactggggcctgtggttgctggctgaggggctgcaacatcctgcctgcagactccagaaactgtggctggatagctgtggcctcacagccaaggcttgtaagaatctttacttcaccctggggatcaaccagaccttgaccgacctttacctgacgaacaacgccctaggggacacaggcgtccgactgctttgcaagcggctgagccatcctggctgcaaactccgagtcctctggttatttgggatggacctgaataaaatgacccacagtaggttggcagcgcttcgagtaacaaaaccttatttggacattggctgctgaatggaagatgggagggtgctcatcacccccacagcataatgatcagcctccttcctagagacagactcatgcagattgagatcaaaagtccctctgcttgggatcaaattaatgtttgacagagctggccaggcgtggtggctcatgtatgtaatcccagcacttcgagaggccgaggcaggtggatcacgaggtcaggagtttgagatcagcctggccaagatggtgaaaccctgtctccactaaaaataaaaaaaaattcgccacgcatggtggtgggcacctgtagtcccagctactcaggaggctgagacaggagaatcgcttgaacccgggaggtggaggttgcagtgagccgagatcgcgccactgcactccagcctgggcgacagagtgggactccatctcaaaaaaaaaaaaaaagtttgacggagttttaagggatgaccaactaagagaggtttgatggcccctaacaggaggggtaaagcccaacaggggccaggtgcggtgtctcacgcctgtaacccccgtactttcgaaggtggaggcaagatgggttgcttaagtctaggagttagagaccagcctaagcaacatagcaagactccactattactaattagccaactactattaattagtacaattaattacccaggagtagcagcacatgcctgtagtcccagctactctggggactgaggtgggaagatcgcttgagcccaggaggtcgaggctgcagtgagctgtcattgcaccactgcgccccagcctgggcaacagagggagacggtgaaaaatggccagtaggggccctcagaggccacccagccctgccaagccctggctacatcaggacatagtaatatttgagctctggggtgggtgccactgccatctagtggacgacactaggaatacatgccaacatccagcaaggaatgcacaggacaaagcacttggtccaaaggcaaattgtgccaagttgaggaaagcctgttctcaaatgtcacaggatacatggggcactcagcatttgggaagagactggtatgcaagctaaccctcagaatgcttgttatgccaacagccctgatcctcccttgctggaggggataatgcctgaaatcttaacgtggcaggcatgtcaggatggccccctgcctggaattcactgggccctgccaagaactgacacctacaaggccacgtgtaggctggccataacctattatacactgtgctttcaacaaaaatacagagcctgccagatgcggtggctcacgcctgtaatccaaatactttcggaggtggaggcaggcagatcagctaagatcaggagttcgagaccagcctggccaacatggtgaaacctactaaaaatacaaaaattaggctgggcacggtggctcatgcctgtaatcccagcactttgggaggccgaggcaggcggatcactaggtcaagagatcaataccatcctgactaacacggtgaaaccccatctctactaaaaacacaaaaaattagctgggtgtggtggcatgcacctatagtcccagctgctggggaggctgaggcaggagaatcgcttgcacctgggaggcagaggttgcagtgaaccgagatcgcgccactgcactccagcctgggcgacagagcgagactccatcttaaaaaatatatatatgggtgtggtgactcatacctgtaatcccagcactttgggaggccaaggagggcagatcacctgaggtcgggagttcaagaccagcctgaccaacatggagaaaccccgtctcttaataaaaatatagaattaaccaggcgtgatagccatgcgtgtaatccccgctactcgggaggctgaggcaggagaatcacttgaacctgggaaacagaggttgc
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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