GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2025-07-03 17:53:58, GGRNA.v2 : RefSeq release 229 (Mar, 2025)

LOCUS       XM_054542798            4043 bp    mRNA    linear   PRI 06-MAR-2024
DEFINITION  PREDICTED: Pongo abelii claudin 17 (CLDN17), mRNA.
ACCESSION   XM_054542798
VERSION     XM_054542798.2
DBLINK      BioProject: PRJNA944618
KEYWORDS    RefSeq.
SOURCE      Pongo abelii (Sumatran orangutan)
  ORGANISM  Pongo abelii
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Pongo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_072007) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 6, 2024 this sequence version replaced XM_054542798.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_028885655.2-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/27/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4043
                     /organism="Pongo abelii"
                     /mol_type="mRNA"
                     /isolate="AG06213"
                     /db_xref="taxon:9601"
                     /chromosome="22"
                     /sex="male"
                     /tissue_type="fibroblast"
     gene            1..4043
                     /gene="CLDN17"
                     /note="claudin 17; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 11 long SRA reads, 2
                     Proteins"
                     /db_xref="GeneID:100449254"
     CDS             691..1341
                     /gene="CLDN17"
                     /codon_start=1
                     /product="claudin-17"
                     /protein_id="XP_054398773.2"
                     /db_xref="GeneID:100449254"
                     /translation="
MAFYPLQIAGLVLGFLGMVGTLATTLLPQWRVSAFVGSNIIVFERLWEGLWMNCIRQARVRLQCKFYSSLLALSPALETARALMCVAVALSLIALLIGICGMKQVQCTGSNERVRAYLLGTSGVLFILTGIFVLIPVSWTANIIIRDFYNPAIHIGQKRELGAALFLGWASTAVLFIGGALLCGFCCCNRKKQGYRYPVPGYCVPHTDKQRNNDNA"
ORIGIN      
taagaataaactatgaaacgttaatttcttgcttagggctcctcctaagtatcaacagttttcgtgtgtcttgaaactaatacctaaacatttctccctattgaggcaactttattaaagccagaattgattaccatcttaaggaaaagtggcttacactagaataaagtaatagtttaaagtccaaaatgttttttaattactccccaataaactcacaaggttttggcattgtcttcagctgtgtcttaacacatatatttatacttttatatcagagtgatttttacacaggaagtttcagctctgtaattagcaatccacaatagaaactttgacacttaattacagcattgctaaggcagtaataatatgagaaatcctaaacttgaatgcagtatttcttgacacacccctagctaccttcttattggctgggaaacaattatatgtgactagtagataatccatacagaaatgaatgtgtgtgagaaaaggcaacctgcatttacaacaggtacttctagttaggccaacttcagtcacagctactgatttggactaaaacgttatgggcagcagccaaggagaatatcatcaaagccttctctagactcaagagccttccacgttctacatcttgagcatcttctaccactccgaattgaaccagtcttcaaagtaaaggcaatggcattttatcccttgcaaattgctgggctggttcttgggttccttggcatggtagggactcttgccacaacccttctacctcagtggagagtatcagcttttgttggcagcaacattattgtctttgagaggctctgggaagggctctggatgaactgcatccgacaagccagggtccggttgcaatgcaagttctatagttccttgttagctctctcgcctgccctggaaacagcccgggccctcatgtgtgtggctgttgctctctccttgatcgccctgcttattggcatctgtggcatgaagcaggtccagtgcacaggctctaacgagagggtcagagcataccttctgggaacttcaggagtcctcttcatcctgacgggcatcttcgttctgattccggtgagctggacagccaacataatcatcagagatttctacaatccagccatccacataggtcagaaacgagagctgggagcagcacttttccttggctgggcaagcactgctgtcctcttcattggaggggctctgctttgtggattttgctgctgcaacagaaagaagcaagggtacagatatccagtgcctggctactgtgtgccacacacagataagcaaagaaacaatgacaatgcttagtaagacctccaccagtaatgtctaatgcctccttttggctccaagtatggactatggtcaatgttttttataaagtcctgctagaaactgtaagtatgtgaggcaggagaacttgctttatgtctagatttaaattgatatgaaagtttcagtttgttactggtggtaggaatgaaaatgacttacttggacattctgacttcaggtgtattaaatgcattgactattgttggactcaatcgctgctccaattttcatattctaaattcaagactactactttttgaccatcatatattatctgataagaatctaaagttgaaattgatattctataacaataaaacatatacctattctgaaatgtaacctattatttttcctctacattgtttcttgtactacacgctaacaactaaatggtaacctttttaaaaagattatcatggaaaattgtagatatcaaacaataatttatagctgaatttgtcaaaatatgaaaatgtccatctaatgaaaggctttgttcctttaggaactcacacaataaaaattagacactttagtgaaaagggagctctgatttctcttagaacaattaagaagactgattttaagatctctaatttatacagttaaactcgcctagaattactgtttaaaggaaaataatttataaatgaaaactaacatttttcatagcctatcatccgcacatcaaacaaacagaagcatctatcttgataagacacatcaaggggaggctattaacactcaattcttatctagaagttatacggtcccaattagagaattgcagtttgggcattgaagggaatggtttcttttctttgttttattctttagtcattgcacaggtataaacatgctaagcaattcgaagaatcaaggtagtgattcagacaattagtcaggctaagataaataccttttttgtattctctaccaaacaaataggtatggtgaaggcatttttgttttgcttgaattacacacatgattttctcagttcttcatttcccatatcaatatcagggttaaaagtgtggtgggtcgtgtggggtgagagtgagtgaggagtgtttatgaggcaagatcaccccatggggtgcttctgagtagcttttacatcttgtgaataaatcagtgtttacatgttcagttttaactcttcaaatattgtgcttattttgtaataaaaatgtatttaattttgagtatataattgcaatgagaagctttaatttgctcaccaaatatttattgcatcttcatccttattgtaataaaataaaatagaatagattacaatgatcttgatatatttagctgtggagtcaattagaataaatttctgtcctcacaagatcacttagtaactctgaaacattaaatcagggatacctcaagcctggatgttaatattcaaccttcactccgttctacaaaccaccagcaagacgtcagtaggtgacgcccctggtaatataaaactgtatttaaaacactggtaatattaaatgataagatcacacaagggtaaatatcttcaaaggttagcaataaaaataagaaaaatagtgattaagatgaatttttcctaagattgatttttttaatcagacttgattcagaaaggcctaatattgcgtatgtcggaaaagagtcatttttcttttacagacaaataagttgtcatagaatcatttttcttaccttttggctcacctagaagtaatcagctttacaagaatggattcctcagcctaaatggggaagtatgttattctgctaaccagaggatcaaagagtaaaaaggtataacacttggtgcaattataagataatattagttattgaatatgtggtaacatttcaggaactaagttttttgttgcttgcccttccattaatcaatgtgtagctttggaaagattatttttccctgctccactctgctgtagtatttttccaattacaccaacaataaattttactaattttccatgaatttaaagatgcattaagaatgcacatttcctactacaaaccctggcgtgcacaaaatttatctttattttctaaaatttaactgaagttcaacttcttgagtacttccccacacattatacagttgttaggatcttatgcagggctaagcagtgttccatggtggtttccagggtcagtccatggtcatcagtccctgcaggtatccgagaagatgtctattttatctgcccacagagtctttgtaggcttcttagctctgtcaattctgccatacttggcatttttttttttttttgagacttttgttctgggctgcttgaaccagtagatttcaaccttggctgtatattagaattgcttggggaactttggaaaataccaatatagctggtgttgagatggtctatggtaccattctccagagtcatagccaggaaccttacctgctgacctggttaccagctatccacaagcagtggtaaagaaaatggctacttcccaataaaatgtttctaatgtcgcctctgtaacccttcttctccttcgccactgtcaaaaaccttgtgcaatttcatagaggttttcagaagcaaatgtataggctaaaactcttcaaggctgcttttgtcttccatttttctacatactcagtgaaatgcttcgctgac
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]