2024-04-29 12:28:05, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_054428072 1063 bp mRNA linear INV 21-MAR-2023 DEFINITION PREDICTED: Macrosteles quadrilineatus cofilin/actin-depolymerizing factor homolog (LOC129000966), transcript variant X2, mRNA. ACCESSION XM_054428072 VERSION XM_054428072.1 DBLINK BioProject: PRJNA944995 KEYWORDS RefSeq. SOURCE Macrosteles quadrilineatus (aster leafhopper) ORGANISM Macrosteles quadrilineatus Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Hemiptera; Auchenorrhyncha; Membracoidea; Cicadellidae; Deltocephalinae; Macrosteles. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_026542601) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_028750875.1-RS_2023_03 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 03/16/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1063 /organism="Macrosteles quadrilineatus" /mol_type="mRNA" /isolate="MER2022" /isolation_source="Lab-reared" /db_xref="taxon:74068" /chromosome="Unknown" /sex="pooled male and female" /tissue_type="Whole body" /country="USA: California, Merced" /collection_date="2022-08-16" gene 1..1063 /gene="LOC129000966" /note="cofilin/actin-depolymerizing factor homolog; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 Proteins" /db_xref="GeneID:129000966" CDS 265..711 /gene="LOC129000966" /codon_start=1 /product="cofilin/actin-depolymerizing factor homolog isoform X2" /protein_id="XP_054284047.1" /db_xref="GeneID:129000966" /translation="
MASGVTVSDVCKTTYEEIKKDKKHRYVVFFIKDEKQIDVEYIGDRNAQYDQFLEDLQKAGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKLRATDRQ"
misc_feature 271..690 /gene="LOC129000966" /note="Cofilin, Destrin, and related actin depolymerizing factors; Region: ADF_cofilin_like; cd11286" /db_xref="CDD:200442" misc_feature 271..276 /gene="LOC129000966" /note="putative G-actin interface [polypeptide binding]; other site" /db_xref="CDD:200442" misc_feature order(520..522,526..528,568..570,649..651,658..660) /gene="LOC129000966" /note="putative F-actin interface [polypeptide binding]; other site" /db_xref="CDD:200442" polyA_site 1063 /gene="LOC129000966" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
gacgcattcagtgattaactcgataacattggacaagaagagattgtggttaggaggggacgataggccgcccaattgcgtgagtcgtactattaggagctgtctgtgcggatggatttttaacgagagagtcattttactctgttcggttggtagtggaagcagtgaacagtgaacaccctctcttccactggatattgggtgacgttagggtttctagtgaaatagactggcacaaggtgatacggatatcgcacaaataaaatggcttccggtgtgacggtatcggatgtgtgtaaaacaacatatgaagagatcaaaaaggataaaaaacatcgatatgtagtattttttatcaaggatgagaaacaaattgacgttgaatacataggtgatcgcaatgcgcaatacgaccaattcctggaggatctgcagaaggcagggactggtgaatgtcggtacggactgtttgactttgagtacacacaccagtgccaaggcacatctgaggcgtccaagaaacagaagcttttcctgatgtcctggtgccccgacactgccaaagtcaagaagaagatgttgtactcctcctcttttgatgccctcaagaagtccttggttggtgttcagaagtacatccaggccacagacctgtcggaagcgtcccaggaggctgtggaagagaagctgcgtgccaccgaccgacagtaggccacctcagctctaggaaaaataacaccagagtcgaccacccgacaagcatttatttatttatatttattagcaaaatttgacgatcgaaacgatcgttcgagtcgactagtcaagagagctcggataccgaagtaccgtatgaaggttgacaactgtgtgatttgtgcttgctcgtgctccttataatgttactcttaccgctattatttttcctagaccgattttgtactgatctataaagaaacaaattaaaacaaaattacaattataatgttgtgtagatgtattttcatttttgatcaaggctggatatatgctatatatataatataattcttttcatttctaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]