2024-05-02 22:22:49, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_054322604 4091 bp mRNA linear PRI 05-OCT-2023 DEFINITION PREDICTED: Homo sapiens NLR family pyrin domain containing 12 (NLRP12), transcript variant X9, mRNA. ACCESSION XM_054322604 VERSION XM_054322604.1 DBLINK BioProject: PRJNA807723 KEYWORDS RefSeq; includes ab initio. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_060943) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_009914755.1-RS_2023_10 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; RefSeqFE; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 10/02/2023 ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 15% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..4091 /organism="Homo sapiens" /mol_type="mRNA" /isolate="CHM13" /db_xref="taxon:9606" /chromosome="19" /sex="female" /cell_line="CHM13htert" /tissue_type="hydatidiform mole" /note="haploid cell line" gene 1..4091 /gene="NLRP12" /gene_synonym="CLR19.3; FCAS2; NALP12; PAN6; PYPAF7; RNO; RNO2" /note="NLR family pyrin domain containing 12; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 8 long SRA reads, and 85% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:91662" /db_xref="HGNC:HGNC:22938" /db_xref="MIM:609648" CDS 856..3627 /gene="NLRP12" /gene_synonym="CLR19.3; FCAS2; NALP12; PAN6; PYPAF7; RNO; RNO2" /codon_start=1 /product="NACHT, LRR and PYD domains-containing protein 12 isoform X9" /protein_id="XP_054178579.1" /db_xref="GeneID:91662" /db_xref="HGNC:HGNC:22938" /db_xref="MIM:609648" /translation="
MEDRNARLGECVNLSHRYTRLLLVKEHSNPMQVQQQLLDTGRGHARTVGHQASPIKIETLFEPDEERPEPPRTVVMQGAAGIGKSMLAHKVMLDWADGKLFQGRFDYLFYINCREMNQSATECSMQDLIFSCWPEPSAPLQELIRVPERLLFIIDGFDELKPSFHDPQGPWCLCWEEKRPTELLLNSLIRKKLLPELSLLITTRPTALEKLHRLLEHPRHVEILGFSEAERKEYFYKYFHNAEQAGQVFNYVRDNEPLFTMCFVPLVCWVVCTCLQQQLEGGGLLRQTSRTTTAVYMLYLLSLMQPKPGAPRLQPPPNQRGLCSLAADGLWNQKILFEEQDLRKHGLDGEDVSAFLNMNIFQKDINCERYYSFIHLSFQEFFAAMYYILDEGEGGAGPDQDVTRLLTEYAFSERSFLALTSRFLFGLLNEETRSHLEKSLCWKVSPHIKMDLLQWIQSKAQSDGSTLQQGSLEFFSCLYEIQEEEFIQQALSHFQVIVVSNIASKMEHMVSSFCLKRCRSAQVLHLYGATYSADGEDRARCSAGAHTLLVQLRPERTVLLDAYSEHLAAALCTNPNLIELSLYRNALGSRGVKLLCQGLRHPNCKLQNLRLKRCRISSSACEDLSAALIANKNLTRMDLSGNGVGFPGMMLLCEGLRHPQCRLQMIQLRKCQLESGACQEMASVLGTNPHLVELDLTGNALEDLGLRLLCQGLRHPVCRLRTLWLKICRLTAAACDELASTLSVNQSLRELDLSLNELGDLGVLLLCEGLRHPTCKLQTLRLGICRLGSAACEGLSVVLQANHNLRELDLSFNDLGDWGLWLLAEGLQHPACRLQKLWLDSCGLTAKACENLYFTLGINQTLTDLYLTNNALGDTGVRLLCKRLSHPGCKLRVLWLFGMDLNKMTHSRLAALRVTKPYLDIGC"
misc_feature 856..1038 /gene="NLRP12" /gene_synonym="CLR19.3; FCAS2; NALP12; PAN6; PYPAF7; RNO; RNO2" /note="Fish-specific NACHT associated domain; Region: FISNA; pfam14484" /db_xref="CDD:433982" misc_feature 1072..1581 /gene="NLRP12" /gene_synonym="CLR19.3; FCAS2; NALP12; PAN6; PYPAF7; RNO; RNO2" /note="NACHT domain; Region: NACHT; pfam05729" /db_xref="CDD:428606" misc_feature 1813..1974 /gene="NLRP12" /gene_synonym="CLR19.3; FCAS2; NALP12; PAN6; PYPAF7; RNO; RNO2" /note="NOD2 winged helix domain; Region: NOD2_WH; pfam17779" /db_xref="CDD:436037" misc_feature 1978..2322 /gene="NLRP12" /gene_synonym="CLR19.3; FCAS2; NALP12; PAN6; PYPAF7; RNO; RNO2" /note="NLRC4 helical domain HD2; Region: NLRC4_HD2; pfam17776" /db_xref="CDD:436035" misc_feature 2584..2670 /gene="NLRP12" /gene_synonym="CLR19.3; FCAS2; NALP12; PAN6; PYPAF7; RNO; RNO2" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 2590..3546 /gene="NLRP12" /gene_synonym="CLR19.3; FCAS2; NALP12; PAN6; PYPAF7; RNO; RNO2" /note="Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond...; Region: LRR_RI; cd00116" /db_xref="CDD:238064" misc_feature order(2593..2595,2599..2601,2608..2610,2614..2616, 2671..2673,2680..2682,2686..2688,2695..2697,2701..2703, 2755..2757,2764..2766,2770..2772,2779..2781,2842..2844, 2851..2853,2857..2859,2866..2868,2872..2874,2926..2928, 2935..2937,2941..2943,2950..2952,2956..2958,3013..3015, 3022..3024,3028..3030,3037..3039,3043..3045,3097..3099, 3106..3108,3112..3114,3121..3123,3127..3129,3184..3186, 3193..3195,3199..3201,3208..3210,3214..3216,3268..3270, 3277..3279,3283..3285,3292..3294,3298..3300,3355..3357, 3364..3366,3370..3372,3379..3381,3385..3387,3439..3441, 3448..3450,3454..3456,3463..3465,3469..3471,3526..3528, 3535..3537,3541..3543) /gene="NLRP12" /gene_synonym="CLR19.3; FCAS2; NALP12; PAN6; PYPAF7; RNO; RNO2" /note="Leucine-rich repeats [active]" /db_xref="CDD:238064" misc_feature 2671..2754 /gene="NLRP12" /gene_synonym="CLR19.3; FCAS2; NALP12; PAN6; PYPAF7; RNO; RNO2" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature order(2689..2694,2863..2865,3034..3036,3118..3120, 3289..3291,3367..3369,3373..3375,3451..3453,3538..3540) /gene="NLRP12" /gene_synonym="CLR19.3; FCAS2; NALP12; PAN6; PYPAF7; RNO; RNO2" /note="Substrate binding site [chemical binding]; other site" /db_xref="CDD:238064" misc_feature 2755..2841 /gene="NLRP12" /gene_synonym="CLR19.3; FCAS2; NALP12; PAN6; PYPAF7; RNO; RNO2" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 2842..2925 /gene="NLRP12" /gene_synonym="CLR19.3; FCAS2; NALP12; PAN6; PYPAF7; RNO; RNO2" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 2926..3012 /gene="NLRP12" /gene_synonym="CLR19.3; FCAS2; NALP12; PAN6; PYPAF7; RNO; RNO2" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 3013..3096 /gene="NLRP12" /gene_synonym="CLR19.3; FCAS2; NALP12; PAN6; PYPAF7; RNO; RNO2" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 3097..3183 /gene="NLRP12" /gene_synonym="CLR19.3; FCAS2; NALP12; PAN6; PYPAF7; RNO; RNO2" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 3184..3267 /gene="NLRP12" /gene_synonym="CLR19.3; FCAS2; NALP12; PAN6; PYPAF7; RNO; RNO2" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 3355..3411 /gene="NLRP12" /gene_synonym="CLR19.3; FCAS2; NALP12; PAN6; PYPAF7; RNO; RNO2" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 3439..3525 /gene="NLRP12" /gene_synonym="CLR19.3; FCAS2; NALP12; PAN6; PYPAF7; RNO; RNO2" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" ORIGIN
agaacagccattggtgagtggggcagggcaggagggaactgaagagtgagaaagcattatttcagcaaaaggtctttcctcccttgctcactcctccaaccactggctcagcctctccgcccgctgcctgtgaatgatgcaatggaaggtgtgctggggtcgccctgtgtcccgtgcataggagcatctcagcctccaggtcctctcctttggggctcacggcacccccatgctacgaaccgcaggcagggacggcctctgtcgcctgtccacctacttggaagaactcgaggctgtggaactgaagaagttcaagttatacctggggaccgcgacagagctggtagaaggcaagatcccctggggaagcatggagaaggccggtcccctggaaatggcccagctgctcatcacccacttcgggccagaggaggcctggaggttggctctcagcacctttgagcggataaacaggaaggacctgtgggagagaggacagagagaggacctggtgagggcattgacaatgcataaccatttgccgagcgttcttccccggactgcatccgtttagtctactgagaggcagctcagcgttcccaaggagacagatgtctagctttgctctttctgtctgtgtgatgctggagaatcgatatgcccctgggcctccatctccatctgtaaaacaagggcatcaggcaagatcggcagttctcatgttactataccccacctggtggcccgtcctcacttgggaaccagtcaacatgccttctggaagtctctcttgtcactccaagaaaagatccccaggaaacctacagggactatgtccgcaggaaattccggctcatggaagaccgcaatgcgcgcctaggggaatgtgtcaacctcagccaccggtacacccggctcctgctggtgaaggagcactcaaaccccatgcaggtccagcagcagcttctggacacaggccggggacacgcgaggaccgtgggacaccaggctagccccatcaagatagagaccctctttgagccagacgaggagcgccccgagccaccgcgcaccgtggtcatgcaaggcgcggcagggataggcaagtccatgctggcacacaaggtgatgctggactgggcggacgggaagctcttccaaggcagatttgattatctcttctacatcaactgcagggagatgaaccagagtgccacggaatgcagcatgcaagacctcatcttcagctgctggcctgagcccagcgcgcctctccaggagctcatccgagttcccgagcgcctccttttcatcatcgacggcttcgatgagctcaagccttctttccacgatcctcagggaccctggtgcctctgctgggaggagaaacggcccacggagctgcttcttaacagcttaattcggaagaagctgctccctgagctatctttgctcatcaccacacggcccacggctttggagaagctccaccgtctgctggagcaccccaggcatgtggagatcctgggcttctctgaggcagaaaggaaggaatacttctacaagtatttccacaatgcagagcaggcgggccaagtcttcaattacgtgagggacaacgagcctctcttcaccatgtgcttcgtccccctggtgtgctgggtggtgtgtacctgcctccagcagcagctggagggtggggggctgttgagacagacgtccaggaccaccactgcagtgtacatgctctacctgctgagtctgatgcaacccaagccgggggccccgcgcctccagcccccacccaaccagagagggttgtgctccttggcggcagatgggctctggaatcagaaaatcctatttgaggagcaggacctccggaagcacggcctagacggggaagacgtctctgccttcctcaacatgaacatcttccagaaggacatcaactgtgagaggtactacagcttcatccacttgagtttccaggaattctttgcagctatgtactatatcctggacgagggggagggcggggcaggcccagaccaggacgtgaccaggctgttgaccgagtacgcgttttctgaaaggagcttcctggcactcaccagccgcttcctgtttggactcctgaacgaggagaccaggagccacctggagaagagtctctgctggaaggtctcgccgcacatcaagatggacctgttgcagtggatccaaagcaaagctcagagcgacggctccaccctgcagcagggctccttggagttcttcagctgcttgtacgagatccaggaggaggagtttatccagcaggccctgagccacttccaggtgatcgtggtcagcaacattgcctccaagatggagcacatggtctcctcgttctgtctgaagcgctgcaggagcgcccaggtgctgcacttgtatggcgccacctacagcgcggacggggaagaccgcgcgaggtgctccgcaggagcgcacacgctgttggtgcagctcagaccagagaggaccgttctgctggacgcctacagtgaacatctggcagcggccctgtgcaccaatccaaacctgatagagctgtctctgtaccgaaatgccctgggcagccggggggtgaagctgctctgtcaaggactcagacaccccaactgcaaacttcagaacctgaggctgaagaggtgccgcatctccagctcagcctgcgaggacctctctgcagctctcatagccaataagaatttgacaaggatggatctcagtggcaacggcgttggattcccaggcatgatgctgctttgcgagggcctgcggcatccccaatgcaggctgcagatgattcagttgaggaagtgtcagctggagtccggggcttgtcaggagatggcttctgtgcttggcaccaacccacatctggttgagttggacctgacaggaaatgcactggaggatttgggcctgaggttactatgccagggactgaggcacccagtctgcagactacggactttgtggctgaagatctgccgcctcactgctgctgcctgtgacgagctggcctcaactctcagtgtgaaccagagcctgagagagctggacctgagcctgaatgagctgggggacctcggggtgctgctgctgtgtgagggcctcaggcatcccacgtgcaagctccagaccctgcggttgggcatctgccggctgggctctgccgcctgtgagggtctttctgtggtgctccaggccaaccacaacctccgggagctggacttgagtttcaacgacctgggagactggggcctgtggttgctggctgaggggctgcaacatcccgcctgcagactccagaaactgtggctggatagctgtggcctcacagccaaggcttgtgagaatctttacttcaccctggggatcaaccagaccttgaccgacctttacctgaccaacaacgccctaggggacacaggtgtccgactgctttgcaagcggctgagccatcctggctgcaaactccgagtcctctggttatttgggatggacctgaataaaatgacccacagtaggttggcagcgcttcgagtaacaaaaccttatttggacattggctgctgaatggtcctatctgctggctctcccctgagatctggacagaggaagatgggagggtgctcatcacccccccagcataatgatcagcctccttcctagagacagactcatgcagattgagatcaaaagtccctctgcttgggatcaaattaatgtttgacagagctggccaggcgtggtggctcatgtatgtaatcctagcacttcgagaggccgaggcaggtggatcacgaggtcaggagtttgagattagcctggccaagatggtgaaaccctgtctctactaaaaataaaaaaaaattagccaggcatggtggcgggcaccttagtcccagctactcaggaggctgaggcaggagaatcgcttgaacccgggaggtggaggttgcagtgagccgagatcgcgccactgcactccagcctgggcgacagagtgggactccatctcaaaaaaaaaaaaaaaaaaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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