2024-05-02 18:53:42, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_054322597 3711 bp mRNA linear PRI 05-OCT-2023 DEFINITION PREDICTED: Homo sapiens NLR family pyrin domain containing 12 (NLRP12), transcript variant X2, mRNA. ACCESSION XM_054322597 VERSION XM_054322597.1 DBLINK BioProject: PRJNA807723 KEYWORDS RefSeq; includes ab initio. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_060943) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_009914755.1-RS_2023_10 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; RefSeqFE; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 10/02/2023 ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 5% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..3711 /organism="Homo sapiens" /mol_type="mRNA" /isolate="CHM13" /db_xref="taxon:9606" /chromosome="19" /sex="female" /cell_line="CHM13htert" /tissue_type="hydatidiform mole" /note="haploid cell line" gene 1..3711 /gene="NLRP12" /gene_synonym="CLR19.3; FCAS2; NALP12; PAN6; PYPAF7; RNO; RNO2" /note="NLR family pyrin domain containing 12; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 ESTs, 1 long SRA read, and 93% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns" /db_xref="GeneID:91662" /db_xref="HGNC:HGNC:22938" /db_xref="MIM:609648" CDS 230..3247 /gene="NLRP12" /gene_synonym="CLR19.3; FCAS2; NALP12; PAN6; PYPAF7; RNO; RNO2" /codon_start=1 /product="NACHT, LRR and PYD domains-containing protein 12 isoform X2" /protein_id="XP_054178572.1" /db_xref="GeneID:91662" /db_xref="HGNC:HGNC:22938" /db_xref="MIM:609648" /translation="
MLRTAGRDGLCRLSTYLEELEAVELKKFKLYLGTATELVEGKIPWGSMEKAGPLEMAQLLITHFGPEEAWRLALSTFERINRKDLWERGQREDLVRDTPPGGPSSLGNQSTCLLEVSLVTPRKDPQETYRDYVRRKFRLMEDRNARLGECVNLSHRYTRLLLVKEHSNPMQVQQQLLDTGRGHARTVGHQASPIKIETLFEPDEERPEPPRTVVMQGAAGIGKSMLAHKVMLDWADGKLFQGRFDYLFYINCREMNQSATECSMQDLIFSCWPEPSAPLQELIRVPERLLFIIDGFDELKPSFHDPQGPWCLCWEEKRPTELLLNSLIRKKLLPELSLLITTRPTALEKLHRLLEHPRHVEILGFSEAERKEYFYKYFHNAEQAGQVFNYVRDNEPLFTMCFVPLVCWVVCTCLQQQLEGGGLLRQTSRTTTAVYMLYLLSLMQPKPGAPRLQPPPNQRGLCSLAADGLWNQKILFEEQDLRKHGLDGEDVSAFLNMNIFQKDINCERYYSFIHLSFQEFFAAMYYILDEGEGGAGPDQDVTRLLTEYAFSERSFLALTSRFLFGLLNEETRSHLEKSLCWKVSPHIKMDLLQWIQSKAQSDGSTLQQGSLEFFSCLYEIQEEEFIQQALSHFQVIVVSNIASKMEHMVSSFCLKRCRSAQVLHLYGATYSADGEDRARCSAGAHTLLVQLRPERTVLLDAYSEHLAAALCTNPNLIELSLYRNALGSRGVKLLCQGLRHPNCKLQNLRLKRCRISSSACEDLSAALIANKNLTRMDLSGNGVGFPGMMLLCEGLRHPQCRLQMIQLKICRLTAAACDELASTLSVNQSLRELDLSLNELGDLGVLLLCEGLRHPTCKLQTLRLGICRLGSAACEGLSVVLQANHNLRELDLSFNDLGDWGLWLLAEGLQHPACRLQKLWLDSCGLTAKACENLYFTLGINQTLTDLYLTNNALGDTGVRLLCKRLSHPGCKLRVLWLFGMDLNKMTHSRLAALRVTKPYLDIGC"
misc_feature 266..505 /gene="NLRP12" /gene_synonym="CLR19.3; FCAS2; NALP12; PAN6; PYPAF7; RNO; RNO2" /note="Pyrin death domain found in NALP proteins; Region: Pyrin_NALPs; cd08320" /db_xref="CDD:260032" misc_feature 614..829 /gene="NLRP12" /gene_synonym="CLR19.3; FCAS2; NALP12; PAN6; PYPAF7; RNO; RNO2" /note="Fish-specific NACHT associated domain; Region: FISNA; pfam14484" /db_xref="CDD:433982" misc_feature 863..1372 /gene="NLRP12" /gene_synonym="CLR19.3; FCAS2; NALP12; PAN6; PYPAF7; RNO; RNO2" /note="NACHT domain; Region: NACHT; pfam05729" /db_xref="CDD:428606" misc_feature 1604..1765 /gene="NLRP12" /gene_synonym="CLR19.3; FCAS2; NALP12; PAN6; PYPAF7; RNO; RNO2" /note="NOD2 winged helix domain; Region: NOD2_WH; pfam17779" /db_xref="CDD:436037" misc_feature 1769..2113 /gene="NLRP12" /gene_synonym="CLR19.3; FCAS2; NALP12; PAN6; PYPAF7; RNO; RNO2" /note="NLRC4 helical domain HD2; Region: NLRC4_HD2; pfam17776" /db_xref="CDD:436035" misc_feature 2291..3166 /gene="NLRP12" /gene_synonym="CLR19.3; FCAS2; NALP12; PAN6; PYPAF7; RNO; RNO2" /note="Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond...; Region: LRR_RI; cd00116" /db_xref="CDD:238064" misc_feature order(2291..2293,2300..2302,2306..2308,2315..2317, 2321..2323,2375..2377,2384..2386,2390..2392,2399..2401, 2405..2407,2462..2464,2471..2473,2477..2479,2486..2488, 2492..2494,2546..2548,2555..2557,2561..2563,2570..2572, 2576..2578,2633..2635,2642..2644,2648..2650,2657..2659, 2663..2665,2717..2719,2726..2728,2732..2734,2741..2743, 2747..2749,2804..2806,2813..2815,2819..2821,2828..2830, 2834..2836,2888..2890,2897..2899,2903..2905,2912..2914, 2918..2920,2975..2977,2984..2986,2990..2992,2999..3001, 3005..3007,3059..3061,3068..3070,3074..3076,3083..3085, 3089..3091,3146..3148,3155..3157,3161..3163) /gene="NLRP12" /gene_synonym="CLR19.3; FCAS2; NALP12; PAN6; PYPAF7; RNO; RNO2" /note="Leucine-rich repeats [active]" /db_xref="CDD:238064" misc_feature order(2309..2314,2483..2485,2654..2656,2738..2740, 2909..2911,2987..2989,2993..2995,3071..3073,3158..3160) /gene="NLRP12" /gene_synonym="CLR19.3; FCAS2; NALP12; PAN6; PYPAF7; RNO; RNO2" /note="Substrate binding site [chemical binding]; other site" /db_xref="CDD:238064" misc_feature 2375..2461 /gene="NLRP12" /gene_synonym="CLR19.3; FCAS2; NALP12; PAN6; PYPAF7; RNO; RNO2" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 2462..2545 /gene="NLRP12" /gene_synonym="CLR19.3; FCAS2; NALP12; PAN6; PYPAF7; RNO; RNO2" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 2546..2632 /gene="NLRP12" /gene_synonym="CLR19.3; FCAS2; NALP12; PAN6; PYPAF7; RNO; RNO2" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 2633..2716 /gene="NLRP12" /gene_synonym="CLR19.3; FCAS2; NALP12; PAN6; PYPAF7; RNO; RNO2" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 2717..2803 /gene="NLRP12" /gene_synonym="CLR19.3; FCAS2; NALP12; PAN6; PYPAF7; RNO; RNO2" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 2804..2887 /gene="NLRP12" /gene_synonym="CLR19.3; FCAS2; NALP12; PAN6; PYPAF7; RNO; RNO2" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 2888..2974 /gene="NLRP12" /gene_synonym="CLR19.3; FCAS2; NALP12; PAN6; PYPAF7; RNO; RNO2" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 2975..3058 /gene="NLRP12" /gene_synonym="CLR19.3; FCAS2; NALP12; PAN6; PYPAF7; RNO; RNO2" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" ORIGIN
agaacagccattggtgagtggggcagggcaggagggaactgaagagtgagaaagcattatttcagcaaaaggtctttcctcccttgctcactcctccaaccactggctcagcctctccgcccgctgcctgtgaatgatgcaatggaaggtgtgctggggtcgccctgtgtcccgtgcataggagcatctcagcctccaggtcctctcctttggggctcacggcacccccatgctacgaaccgcaggcagggacggcctctgtcgcctgtccacctacttggaagaactcgaggctgtggaactgaagaagttcaagttatacctggggaccgcgacagagctggtagaaggcaagatcccctggggaagcatggagaaggccggtcccctggaaatggcccagctgctcatcacccacttcgggccagaggaggcctggaggttggctctcagcacctttgagcggataaacaggaaggacctgtgggagagaggacagagagaggacctggtgagggataccccacctggtggcccgtcctcacttgggaaccagtcaacatgccttctggaagtctctcttgtcactccaagaaaagatccccaggaaacctacagggactatgtccgcaggaaattccggctcatggaagaccgcaatgcgcgcctaggggaatgtgtcaacctcagccaccggtacacccggctcctgctggtgaaggagcactcaaaccccatgcaggtccagcagcagcttctggacacaggccggggacacgcgaggaccgtgggacaccaggctagccccatcaagatagagaccctctttgagccagacgaggagcgccccgagccaccgcgcaccgtggtcatgcaaggcgcggcagggataggcaagtccatgctggcacacaaggtgatgctggactgggcggacgggaagctcttccaaggcagatttgattatctcttctacatcaactgcagggagatgaaccagagtgccacggaatgcagcatgcaagacctcatcttcagctgctggcctgagcccagcgcgcctctccaggagctcatccgagttcccgagcgcctccttttcatcatcgacggcttcgatgagctcaagccttctttccacgatcctcagggaccctggtgcctctgctgggaggagaaacggcccacggagctgcttcttaacagcttaattcggaagaagctgctccctgagctatctttgctcatcaccacacggcccacggctttggagaagctccaccgtctgctggagcaccccaggcatgtggagatcctgggcttctctgaggcagaaaggaaggaatacttctacaagtatttccacaatgcagagcaggcgggccaagtcttcaattacgtgagggacaacgagcctctcttcaccatgtgcttcgtccccctggtgtgctgggtggtgtgtacctgcctccagcagcagctggagggtggggggctgttgagacagacgtccaggaccaccactgcagtgtacatgctctacctgctgagtctgatgcaacccaagccgggggccccgcgcctccagcccccacccaaccagagagggttgtgctccttggcggcagatgggctctggaatcagaaaatcctatttgaggagcaggacctccggaagcacggcctagacggggaagacgtctctgccttcctcaacatgaacatcttccagaaggacatcaactgtgagaggtactacagcttcatccacttgagtttccaggaattctttgcagctatgtactatatcctggacgagggggagggcggggcaggcccagaccaggacgtgaccaggctgttgaccgagtacgcgttttctgaaaggagcttcctggcactcaccagccgcttcctgtttggactcctgaacgaggagaccaggagccacctggagaagagtctctgctggaaggtctcgccgcacatcaagatggacctgttgcagtggatccaaagcaaagctcagagcgacggctccaccctgcagcagggctccttggagttcttcagctgcttgtacgagatccaggaggaggagtttatccagcaggccctgagccacttccaggtgatcgtggtcagcaacattgcctccaagatggagcacatggtctcctcgttctgtctgaagcgctgcaggagcgcccaggtgctgcacttgtatggcgccacctacagcgcggacggggaagaccgcgcgaggtgctccgcaggagcgcacacgctgttggtgcagctcagaccagagaggaccgttctgctggacgcctacagtgaacatctggcagcggccctgtgcaccaatccaaacctgatagagctgtctctgtaccgaaatgccctgggcagccggggggtgaagctgctctgtcaaggactcagacaccccaactgcaaacttcagaacctgaggctgaagaggtgccgcatctccagctcagcctgcgaggacctctctgcagctctcatagccaataagaatttgacaaggatggatctcagtggcaacggcgttggattcccaggcatgatgctgctttgcgagggcctgcggcatccccaatgcaggctgcagatgattcagctgaagatctgccgcctcactgctgctgcctgtgacgagctggcctcaactctcagtgtgaaccagagcctgagagagctggacctgagcctgaatgagctgggggacctcggggtgctgctgctgtgtgagggcctcaggcatcccacgtgcaagctccagaccctgcggttgggcatctgccggctgggctctgccgcctgtgagggtctttctgtggtgctccaggccaaccacaacctccgggagctggacttgagtttcaacgacctgggagactggggcctgtggttgctggctgaggggctgcaacatcccgcctgcagactccagaaactgtggctggatagctgtggcctcacagccaaggcttgtgagaatctttacttcaccctggggatcaaccagaccttgaccgacctttacctgaccaacaacgccctaggggacacaggtgtccgactgctttgcaagcggctgagccatcctggctgcaaactccgagtcctctggttatttgggatggacctgaataaaatgacccacagtaggttggcagcgcttcgagtaacaaaaccttatttggacattggctgctgaatggtcctatctgctggctctcccctgagatctggacagaggaagatgggagggtgctcatcacccccccagcataatgatcagcctccttcctagagacagactcatgcagattgagatcaaaagtccctctgcttgggatcaaattaatgtttgacagagctggccaggcgtggtggctcatgtatgtaatcctagcacttcgagaggccgaggcaggtggatcacgaggtcaggagtttgagattagcctggccaagatggtgaaaccctgtctctactaaaaataaaaaaaaattagccaggcatggtggcgggcaccttagtcccagctactcaggaggctgaggcaggagaatcgcttgaacccgggaggtggaggttgcagtgagccgagatcgcgccactgcactccagcctgggcgacagagtgggactccatctcaaaaaaaaaaaaaaaaaaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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