2024-04-29 15:43:02, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_053798483 1089 bp mRNA linear INV 23-FEB-2023 DEFINITION PREDICTED: Cherax quadricarinatus uncharacterized LOC128703705 (LOC128703705), mRNA. ACCESSION XM_053798483 VERSION XM_053798483.1 DBLINK BioProject: PRJNA923327 KEYWORDS RefSeq. SOURCE Cherax quadricarinatus ORGANISM Cherax quadricarinatus Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Pleocyemata; Astacidea; Parastacoidea; Parastacidae; Cherax. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_069487) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_026875155.1-RS_2023_01 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 01/17/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1089 /organism="Cherax quadricarinatus" /mol_type="mRNA" /isolate="HC-2022" /db_xref="taxon:27406" /chromosome="89" /sex="male" /tissue_type="muscle" gene 1..1089 /gene="LOC128703705" /note="uncharacterized LOC128703705; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:128703705" CDS 346..1089 /gene="LOC128703705" /codon_start=1 /product="uncharacterized protein LOC128703705" /protein_id="XP_053654458.1" /db_xref="GeneID:128703705" /translation="
MPLSSDTSAALSLLERIQRSMKETDETKLSDQCSNDLNTLISVLESPVFRGIINIQESLKELKKQVSQHPSIVPTDFDISREGKLILHVSPEGGHQLEFAVHGEPSTITLQPAPALITQVDHEDAAPSKATESIELQELCHLQKQQQQQDEEELVEAKAKPEEVKKDEGVRLVDEDEMPPAITNATLDQELQRAIHTAAQGRDVHHIQLYKPEGSSLGFSVVGLRSEKRGELGIYVQGIQPTGIAAQ"
misc_feature 955..>1086 /gene="LOC128703705" /note="PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated; Region: PDZ; cl00117" /db_xref="CDD:444702" ORIGIN
aacagtgcgagaaggtgtgtgtgtgtttatgctagcagttatcgactttgatggtgttgtttggaagtgatatagatcaaaacctatatttcatagtatataaggttaaattgtatatatcccatgtgtaaaattaaaaatccattgtaaataaccccttgaaatggtgtaaaataagagtggcatccccccgtgtttgagggaggctcctctcttcaaggttatcctctcgtcttgggacggtgaacttcaagaagagattgtgatgttgtgatcgaggtgggataactagtgccagccttgttaacatcacgccggtcttccatctgtgccaagagaaacatcatgccgctcagttcagatacctcggcggcgctgtccctgctggagcgcatccagcgctccatgaaggaaacagacgagaccaagttgtcagaccagtgcagcaacgacctcaacacgctcatctccgtcctagagagtcccgtcttcaggggcatcatcaacatacaggagtcgctgaaggagttgaagaagcaggtgtcacaacacccatccatagtaccgacggactttgacatcagtcgtgagggaaagttgatccttcacgtctccccagaaggtggacaccagctggagtttgctgttcacggtgaaccatctaccatcacactacaacctgcaccagctctcattacccaggttgatcatgaagatgcagctcccagcaaggctacagagagcatagagctgcaggaactgtgccacctgcagaaacagcagcagcagcaggatgaggaggaacttgtggaagcaaaggcgaaacctgaggaggtgaagaaagatgagggagtgaggttggtggatgaggatgagatgccgccagccatcaccaacgccactctggaccaggagctacagcgagccatacacactgctgcccagggcagagatgtccatcatattcagctgtacaagcctgagggaagcagtctgggcttcagcgtggtgggtctcagatcagagaagagaggcgagctgggtatctacgtccagggaattcaacccaccggcatcgctgctcagtga
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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