2024-04-30 05:28:03, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_053402315 4877 bp mRNA linear VRT 26-FEB-2023 DEFINITION PREDICTED: Podarcis raffonei uncharacterized LOC128420637 (LOC128420637), mRNA. ACCESSION XM_053402315 VERSION XM_053402315.1 DBLINK BioProject: PRJNA928705 KEYWORDS RefSeq. SOURCE Podarcis raffonei (Aeolian wall lizard) ORGANISM Podarcis raffonei Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Laterata; Lacertibaenia; Lacertidae; Podarcis. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_070610) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_027172205.1-RS_2023_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/25/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4877 /organism="Podarcis raffonei" /mol_type="mRNA" /isolate="rPodRaf1" /specimen_voucher="LC15" /db_xref="taxon:65483" /chromosome="9" /sex="female" /tissue_type="blood" /dev_stage="adult" /country="Italy: Stromboli Island" /lat_lon="38.788175 N 15.229709 E" /collection_date="2020-07-01" /collected_by="Claudio Ciofi" gene 1..4877 /gene="LOC128420637" /note="uncharacterized LOC128420637; Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:128420637" CDS 275..4534 /gene="LOC128420637" /codon_start=1 /product="uncharacterized protein LOC128420637" /protein_id="XP_053258290.1" /db_xref="GeneID:128420637" /translation="
MVKSKKKKNQQKKGNFQNYRWGPRGNMPPWMRGPCPGDMWGPRGNMPPWMGGPCPDDTWGPGGDMPPWMGGPCPDDTWGPEGDMTPWTGGPCPDDTWGPGGDMPPWMGGPCPDDTWGPEGDMTPWTGGPCPNDTWQPRKKRRKYMQPNMSGPCPNMCDPKESMSSGPNAPDQRQCRTFGGPGKSSSGMEGCGTNSQENDPLPPGNCSSDQPPSENAADTQRHYTEESAARILSNFGLSAKDLEEFGHYSDDQLKPENMAMILRDIVERKKARQLPTSSQGKEEETSGGHGGSDSLMKTGPGVPSAAQSATTPAASLMPQSSGSPSPSMMNDYHAVSPTVLPHVCSLCKIECADITGWNLHVHTAEHSEKCDELRQQHPEWNPEECSSLQRHEGDKKEKHIPIPCSTSSNPNTSQHSIPGHASSQTRSRSMSPGPNSKRSRSRSPRCRSRSSERPSSPSLSSQSSSSQKRELRKSTRSPASSAEAGSSREPPSKSDVAEQQPNKSEHPLQTNPGHQEPPKKEAATQEQGDRQPPSKSDVAEQPPNKSEHPLQTNPGQQEPARMEAAMEEQADRQPPAKSDVAEQPPSKSDHPLQTNPGHQELPKMEAATQEEGDWQPPSKSDVAEQPPSKSDHPLQTNPGHQELPKMEAATQEEGDWQPPSKSDVAEQPPSKSDHPLQTNPGHQELPKKEAATQEQGDQQKETSKKTRARKRGKKRPAKSNVAKPPAKSDVAEQLPNKSDQPLQTNPDHQELPKMEAATQEQGDRQPPSKSDVAEQPPSKSDHPLQTNPGHQELPKMEAATQEEGDRQPPSKSDVAEQPPSKSDHPLQTNPGHQELPKMEAATQEEGDWQPPSKSDVAEQPPSKSDHPLQTNPGHQELPKMEAATQEEGDWQPPSKSDVAEQPPSKSDHPLQTNPGHQELPKMEAATQEQGDRQPPAKSDVAELPHKSEHPLQTDPGHQELPKKEAATQEQGDRQREDQLRSSLTPLVEQSVMQALSLLQPGGAVGAGLTQGTSLPPVVQIDPASLVSMMQLVATQVVQAALASKEASSVRESPSVAGPSPQLSIPAGSEEKKQESSQEVVPPCSACVERSEASGSKGDLFTSTLFTVPWLQKEDARPPKQNLPAEIPAACVERSEASGSKGDLTPSTLFTVPWLQKKEDARPPKQNLPAEISAACVERSEASSSKEDLFTSTLFTVPWLQKEDARPPKQNLPAEIPAGLATKKVWICGHSVVYWAEVRAVSSRWGSNLGFPSNIELSWIGQRGMRWHQLLPLLTARISTVGPPDIIIFHLGENDVGGQKIYDLVKAITEDLETLHFQYPRISLCWSELLERQRWPIIPRPGTPEPQQASVNKSRDRIRQKVNKGITNKVQLLGGWVIRHPDITVKREALFRQDGVDLSDEGLDVWLTDLVGGLKYCFQM"
misc_feature 347..>907 /gene="LOC128420637" /note="ARC105 or Med15 subunit of Mediator complex non-fungal; Region: Med15; pfam09606" /db_xref="CDD:312941" misc_feature <1694..>3184 /gene="LOC128420637" /note="DNA translocase FtsK; Provisional; Region: PRK10263" /db_xref="CDD:236669" misc_feature <3095..>3511 /gene="LOC128420637" /note="flagellar hook length control protein FliK; Region: PRK10118" /db_xref="CDD:236652" polyA_site 4877 /gene="LOC128420637" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
cagccaggggcccgccgcgcacgcgcagtacacccctctccgcgcgcctgcgcgtggcgctccgagggcggttgaggcggcggcggaaagaggcctcggctgagcttggtggtggtgtctgctgtgaattgctgcagatttggcatttccctctgtagtgtcctgctctgcagcttgttcagtttaagaccaagtgatctcagtggttgaaccctgttgcttctgaccattctgccacacttcatccttaaattggtcataggtgtaattagccatggtcaagtctaaaaaaaagaaaaaccaacagaagaaggggaatttccagaattacaggtggggacctagaggaaatatgcccccatggatgagaggtccttgcccaggtgacatgtggggacccagaggaaatatgcccccatggatgggaggtccttgtccagatgacacgtggggacccggaggagatatgcccccgtggatgggaggtccttgtccagatgacacatggggacccgaaggagatatgaccccatggaccggaggtccttgtccagatgacacgtggggacccggaggagatatgcccccgtggatgggaggtccttgtccagatgacacatggggacccgaaggagatatgaccccatggaccggaggtccttgtccaaatgacacatggcaacccagaaagaaacgcagaaaatatatgcagccaaatatgagcggcccctgtcctaatatgtgtgatcctaaagagagcatgtcttcaggacctaatgcacctgaccaaaggcagtgtaggacttttggagggccaggaaagtcatcttctgggatggaaggatgtggcactaacagtcaggagaatgatccattgccacctggtaattgtagctcagatcagcccccttcagaaaatgctgcagatactcagaggcattacacagaagagagtgctgcaagaattctctcaaactttggcttatctgctaaagatttggaggaatttggccactattcagatgatcagctgaagcctgaaaacatggctatgattctgagggacatcgttgagcgcaagaaggctcgtcagttgcccacttcatctcagggcaaagaagaggaaacctctggcggacatggtggatctgattccctgatgaaaacaggacctggtgtaccgtcagcagctcaatccgcaacaacacctgcggcttcgttgatgcctcagtcttcaggatctccatctccgtcaatgatgaacgattatcatgctgtgtcgccaacagtacttccacacgtgtgttctctgtgtaaaatagaatgtgcagatatcacaggctggaatctgcatgtgcacactgctgaacactccgagaaatgtgatgagctacgccaacagcatcctgagtggaatccagaagaatgctcttcgttacagagacatgaaggcgacaagaaggaaaaacatattccaataccatgctctaccagttctaacccaaacacttcacagcactcaattcctggccatgcctcaagtcagactcggtcacgatctatgagccctgggcccaacagcaaacggtcacgatctaggagccccagatgtaggtccaggtcttcagagcgaccaagctcccccagcttgagttctcaaagctcttctagccagaagagagaactgagaaaatcaactagatctccagcgtcgtctgcagaagcaggaagctccagggaacctccatccaaatctgatgtggcagaacaacaacccaacaagtcggagcatccactgcagacaaatcccggccaccaggagccgcccaagaaggaggcagcaacgcaggaacaaggagaccggcaacctccatccaaatctgatgtggcagaacaaccacccaacaagtcggagcatccactgcagacaaatcccggccagcaggagccggccaggatggaggcagcaatggaggaacaagcagaccggcaacctccagccaaatctgatgtggcagaacaaccacccagcaagtcagaccatccactgcagacaaatcccggccatcaggagctgcccaagatggaggcagcaacgcaggaagaaggagactggcaacctccatccaaatctgatgtggcagaacaaccacccagcaagtcagaccatccactgcagacaaatcccggccatcaggagctgcccaagatggaggcagcaacgcaggaagaaggagactggcaacctccatccaaatctgatgtggcagaacaaccacccagcaagtcagaccatccactgcagacaaatcccggccatcaggagctgcccaagaaggaggcagcaacgcaggaacaaggagaccagcaaaaggagaccagtaagaagaccagggcaaggaaacgaggaaaaaagagaccagccaaatctaatgtggcaaaacctccagccaaatctgatgtggcagaacaactacccaacaagtctgaccagccactgcaaacaaatcccgaccatcaggagctgcccaagatggaggcagcaacgcaggaacaaggagaccggcaacctccatccaaatctgatgtggcagaacaaccacccagcaagtcagaccatccactgcagacaaatcccggccatcaggagctgcccaagatggaggcagcaacgcaggaagaaggagaccggcaacctccatccaaatctgatgtggcagaacaaccacccagcaagtcagaccatccactgcagacaaatcccggccatcaggagctgcccaagatggaggcagcaacgcaggaagaaggagactggcaacctccatccaaatctgatgtggcagaacaaccacccagcaagtcagaccatccactgcagacaaatcccggccatcaggagctgcccaagatggaggcagcaacgcaggaagaaggagactggcaacctccatccaaatctgatgtggcagaacaaccacccagcaagtcagaccatccactgcagacaaatcccggccaccaggagctgcccaagatggaggcagcaacgcaggaacaaggagaccggcaacctccagccaaatctgatgtggcagagctcccacacaagtcagagcatccgctgcagacagaccctggccatcaggagctgcccaagaaggaggcagcaacgcaggaacaaggcgaccggcaacgtgaagatcagttgcgctcgtcgttgacgcctcttgtagaacaaagtgtcatgcaggccctgtcgctgctgcagcctggaggcgcagtgggtgctggactcacccaaggaacaagcttgccccccgttgtgcagatcgatccagcatcccttgtctccatgatgcagctggttgcaacacaggtggtgcaagctgccttagcctccaaggaggcctcaagtgtgcgggaaagcccaagtgtggctggcccaagcccccagttaagtatccctgcaggaagcgaagaaaagaagcaggagagcagtcaggaagtcgttcctccttgctcagcatgtgtggaaagatcagaggcttcaggtagtaaaggggacttgttcacctcgaccttgttcaccgtgccatggcttcagaaggaagatgcaagacctccgaagcagaatcttccagcggagatacctgcagcatgcgtggaaagatcggaggcttcaggtagcaaaggggacttaactccctcaaccttgttcaccgtgccatggcttcagaagaaggaagatgcaagacctccgaagcagaatcttccagcggagatatctgcagcatgcgtggaaagatcggaggcttcaagtagtaaagaggacttgttcacctcgaccttgttcaccgtgccgtggcttcagaaggaagatgcaagacctccgaagcagaatcttccagcggagatacctgcaggattggccaccaagaaggtatggatttgcgggcacagcgttgtgtattgggccgaagtccgcgcagtttcgtccaggtgggggagcaacctgggcttcccctcgaatatagagctgtcgtggatcggccagaggggaatgaggtggcatcagctcctaccattgctgactgctcggatctctacggtgggcccacctgatatcatcatctttcacctgggtgagaacgatgtgggcggacaaaagatttatgacctagtcaaggctatcactgaagacttggagaccttgcactttcaatacccacggatcagcctctgttggtccgagctactggagaggcagcgctggcctattattccgaggcctggcaccccggaaccgcagcaggcatccgtgaacaaatcaagggacagaataaggcagaaagtgaacaaaggcataacgaacaaggtgcagctgctgggtggctgggtcatccgacaccctgacatcacagtcaaacgagaggccttattccgacaggatggggtagacctctccgatgagggacttgatgtttggttgactgacctggtgggaggcctaaagtattgttttcagatgtgagcggtttggcggcgagcatttgcttgagggccagttgatgcattggataggtgtagtcttggattgaggggaggctgtagcctctgcctgcccctccggaaaagggatccgggagagatgcttctgcccagatgcccaggtgggggctagggccatagcactccccaggtgcaatccagcaagggatttactctttgatgcaggtcaagaacttgctcacttccagttgaccccaaattaagtccttccggcagacgggccagaaattgttggttctccctgatgtctatgtgaaacctcttacaccagtagttaataaagccatgacctgatttcacccaaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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