2024-04-29 04:01:09, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_052941176 3729 bp mRNA linear INV 13-JAN-2023 DEFINITION PREDICTED: Mya arenaria endonuclease 8-like 3 (LOC128229319), transcript variant X4, mRNA. ACCESSION XM_052941176 VERSION XM_052941176.1 DBLINK BioProject: PRJNA918361 KEYWORDS RefSeq. SOURCE Mya arenaria ORGANISM Mya arenaria Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Heteroconchia; Euheterodonta; Imparidentia; Neoheterodontei; Myida; Myoidea; Myidae; Mya. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_069124) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_026914265.1-RS_2023_01 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3729 /organism="Mya arenaria" /mol_type="mRNA" /isolate="MELC-2E11" /db_xref="taxon:6604" /chromosome="3" /sex="female" /tissue_type="Siphon/mantle" /country="USA: Larrabe Cove, Machiasport, ME" /collection_date="2018-06-01" gene 1..3729 /gene="LOC128229319" /note="endonuclease 8-like 3; Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:128229319" CDS 39..1367 /gene="LOC128229319" /codon_start=1 /product="endonuclease 8-like 3 isoform X4" /protein_id="XP_052797136.1" /db_xref="GeneID:128229319" /translation="
MNHQLKFMIFVTVVHFLMDGQSFINNAKVDNDSGGRTETATLELHMSEDVLTFKKSSVDIRPSVPCRQKYETMNDVDICSPVFNFRRAFSLVREQTDRQVCDVLLDQSILPGVGNIIKNEALFDSGIKPSSKIGELKDEHIRHLLKMTRDFTDIFYRCRRDGKQLSPYYKIYGKRLCKQCEGRVIICRLGDDSGRVTYFCENCQTNDLVNKNRKLPSKNSLLGWVQTGSHISQPEIADWSCEHCTLINKDTATSCSACLNPRVDKTVEAKPAQFGAKGHVSGQGNQTMNRKRKTEDSGVEQTRAKTQKINTSVVKLENKTGFKTKIPQNGSAKTNKTQNGTTKEQSDKSRIPMCEHHKRKCSMKEVRKEGQNLGRWFFSCVVRSCNFFQWADVNFPTCTDHGKPCTIRTVLKIGPNNGKRFFTCKLPKKKQCKFFEWAIGYD"
misc_feature <54..653 /gene="LOC128229319" /note="Formamidopyrimidine-DNA glycosylase [Replication, recombination and repair]; Region: Nei; COG0266" /db_xref="CDD:223344" misc_feature 750..821 /gene="LOC128229319" /note="Zinc finger domain; Region: ZnF_RBZ; smart00547" /db_xref="CDD:197784" misc_feature 753..812 /gene="LOC128229319" /note="RanBP2-type Zn finger [structural motif]; Region: RanBP2-type Zn finger" /db_xref="CDD:275376" misc_feature 1092..1214 /gene="LOC128229319" /note="GRF zinc finger; Region: zf-GRF; pfam06839" /db_xref="CDD:429147" misc_feature 1224..1352 /gene="LOC128229319" /note="GRF zinc finger; Region: zf-GRF; pfam06839" /db_xref="CDD:429147" ORIGIN
atttggccattggctatatattaaagatttactgtttcatgaatcatcaactgaaatttatgatttttgttactgtggttcattttctgatggatggccagtcatttatcaacaatgcgaaggttgacaatgattctggtgggaggactgagacagccacgctggaactacacatgtcggaggatgtacttacgttcaagaagtcttcagtggatatcaggccatcggtcccctgtaggcagaaatacgagacaatgaatgatgttgacatatgttccccagtgttcaacttccgacgcgcattctctcttgtacgtgaacaaacggacagacaggtgtgtgatgtgctcctggaccagtccattctgccaggggtcggcaacatcatcaagaatgaggccttgtttgacagtggcataaaaccaagctcaaagattggggagcttaaggatgagcacattcgccacctgctcaagatgaccagggactttacagatatattctaccggtgtcggcgtgatggtaagcagctgtctccatactacaagatttatgggaagcgtctgtgtaaacagtgtgagggcagggtcatcatatgtcgccttggtgatgatagtgggagggtgacctacttctgtgagaactgtcagaccaatgatctggtaaacaaaaacagaaaacttccatctaagaacagtttgcttggctgggtgcagactgggtcccacatttcacaaccggagatagcagactggtcatgtgagcactgtacactcatcaacaaggacactgcaacgtcttgtagtgcctgcctcaaccccagggttgacaaaactgtggaagccaagcctgcacagtttggggctaaagggcatgtttctggacaaggcaatcaaacaatgaacaggaaaaggaaaacagaagactctggtgttgagcaaacaagggcaaaaactcagaaaattaacacaagtgtggtcaagctggaaaacaaaactggttttaaaacaaagatacctcaaaatggatctgcaaaaaccaacaaaacacaaaatggaacaacaaaggaacaaagtgataaaagtaggattccaatgtgtgaacatcacaagcgaaaatgcagcatgaaggaagttcgcaaagaggggcaaaacctgggacgctggttcttttcgtgtgtcgtcaggtcctgtaatttcttccagtgggctgatgtcaattttcctacctgcacagaccatgggaaaccttgtactatacgcactgtgttgaaaataggaccgaataacggaaagaggtttttcacctgcaaactgcccaagaaaaaacaatgcaagttcttcgaatgggcaattggttatgactaagagtggtatattcaatgtatatagacgctgttgtatactcaatacatgggattcatgtccaaatgattttgcagatcagtaggttgtttaaactgcatttccatagggtcactgacgcggcctctctgtcttgataggaaaaatcattcagaatgtatataaaacaaatatcccttttaatgatgcaatgcaatggtgactttattatgccccccttcgaagaagagggatatattgctttgcacatgtcggtcagtccgtccgtccgtcggtagaccaaagcttgtccgagttataactcaacaattcctggaggtatggtgatcaagcttgacatgaaggttgggcctgaccagtagatgacccctattgatttaagggctcatcgggtcaaaggtcaaggtcacagtgacctttaatgataaaataattataaagcttgtccgagtgataactgaacaatgcctgcttccatggctctcaaacttgacatggagattgggcctgaccagtagatgacacctatcgttttggggggtcatcgggccaaaggtcaaagtaacagtggccttgattggttaaagggtgtctgagtgataactctacaatgcctgcacccatggccctcaaacttgacttggaggttgggcctgaccagtagatgacccccagtgatttatgggcacatcgggtcaaaggtcaaggtcacggttaccttaaatgataaaaggttgtcccagtgataactaccatgcctgcacccatggccctcaaacctgaattagaggttgggcctgaccagtagatgacccctattgattatgggggtcatcgggcaaaaagtcaaggtcacagtgaccttgaatgataaagggttgtcagagtgataactctacaatgcctgcactcatggccctcaaacttgacttggaggtaatgtctgaccagaagatgacacctattgattttatggctcatggcctcaaaggtcaaggtcatagtgacctttaatgataaaataactttaaagcttgtccgagtgataactcaacaatgcctagacctatgttcatcaaacttaatatggaagttaggactgaccagtagatgacccctattgttttgggggtcatcgggcaaagggtcaaagtcacagtgaccttggtttgttaaaggatgtctgagtgataactggacaatgcctgctgcacccatggccctcaaacttgacttggaggttgggcctgaccagtagatgacccctatcgattttagggtcatcggatcaaaggtcaacatcagtgaccattaaggcaaacttaacaattcattgacctatgatcatcaaacttgagatgaaggttggccctgactagtagatgacccctattattttgggggtcataggtccagagtttaaggtcacaatgaccttaaatgtgaaaaagttagcaaagcctctcccagtgatatctcaacaatgcctagacctattatcatcaaacttgacatggaggctgggcctgaccagtagatgacccctattgatttcaggagtcatcaaatcaaaggtcaaggtcacagtgaccttaaacgaaaaaagcttgtctgtgtgataacttgacactgcctgaacccatggccttaaacttggaggtccatgcatatttcattcaatcccaaataatcctgacaacatggcactcaggggggggggcataatgtttgacaaacacctcttgtttttaagttgttttaaatattttggacatttcttaacagaaaaatagcagagtacttgttttatgtgttattatcaaacattgttttagccaaagtattgataaaggtcaacagtactaagatatgtttagtgttattttgagtcacacagtgaagctacactctcaatgcaggtttggaatccccgtaccccaaaccccaatgagtggggaagacatattgttttgtcctgtcagtccatacgtcactcgtcaattaagcttactacagagctacagataacttttttacattatattttacacccttatgcattctagtaaagtgtatggtacactcttgggttattcattagtgtaactgcaatttctaaagtgtactgatacattaaattacaaaattgaatgacttattttacttaatgaactttatagtacaaaacaagaacttactcaaaattgaaatgttgctcagctaattataagtcctgattaattaaaacatctttactacatgtactttgctttcttggcttacaaccttctataggtctcttaggatagtgtatcgattttaacaaatcggtttagcatttagtcaaaaccgctggcgtataaca
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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