GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-05-05 13:04:32, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_051231372            1613 bp    mRNA    linear   INV 01-MAR-2023
DEFINITION  Trichomonas vaginalis G3 A-type inclusion protein-related family
            (TVAGG3_0358090), partial mRNA.
ACCESSION   XM_051231372
VERSION     XM_051231372.1
DBLINK      BioProject: PRJNA938429
            BioSample: SAMN31107788
KEYWORDS    RefSeq.
SOURCE      Trichomonas vaginalis G3
  ORGANISM  Trichomonas vaginalis G3
            Eukaryota; Metamonada; Parabasalia; Trichomonadida;
            Trichomonadidae; Trichomonas.
REFERENCE   1  (bases 1 to 1613)
  AUTHORS   Sullivan,S.A., Carlton,J.M. and Schatz,M.C.
  TITLE     A new chromosome-level assembly of the sexually transmitted
            parasite Trichomonas vaginalis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1613)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (28-FEB-2023) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1613)
  AUTHORS   Sullivan,S.A., Carlton,J.M. and Schatz,M.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-FEB-2022) Center for Genomics & Systems Biology, New
            York University, 12 Waverly Place, New York, NY 10003, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NC_067207).
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..1613
                     /organism="Trichomonas vaginalis G3"
                     /mol_type="mRNA"
                     /strain="G3"
                     /isolation_source="clinical isolate"
                     /host="Homo sapiens"
                     /culture_collection="ATCC:PRA-98"
                     /db_xref="taxon:412133"
                     /chromosome="V"
                     /country="United Kingdom: Beckenham"
                     /collection_date="1973"
     gene            <1..>1613
                     /locus_tag="TVAGG3_0358090"
                     /old_locus_tag="TVAG_2v0358090"
                     /note="replaces TrichDB:TVAG_193740"
                     /db_xref="GeneID:75651304"
     CDS             <1..>1613
                     /locus_tag="TVAGG3_0358090"
                     /old_locus_tag="TVAG_2v0358090"
                     /note="eggNOG seed ortholog:5722.XP_001315526.1;replaces
                     TrichDB:TVAG_193740"
                     /codon_start=1
                     /product="A-type inclusion protein-related family"
                     /protein_id="XP_051101102.1"
                     /db_xref="GeneID:75651304"
                     /translation="
EIKNINSHINEKNSKNSETDKKNKDLEQELNDKKAQLESIPTVEDKSSELENEIKNINSHINDKNSKNSETDHKNKDLEQELNDKKSQLESIPTVEDKSSELENEIKNINSHINEKNSKNSETDKKNKDLEQELNDKKAQLESIPTVEDKSSELENEIKNINSHINEKNSKNSETDKKNKDLEQELNDKKSQLESIPTVGDKSSELENEIKNINSQINEKNSKNSETDHKNKDLEQELNDKKQELESIPTVEDKSSELENEINNVDSQINDKNSKNSETDHKNKDLEQELNDKKSQLESIPTVEDKSSELENEIKNINSHINEKNSKNSETDKKNKDLEQELNDKKAQLESIPTVEDKSSELENELKKIDSQINDKNSKNSETDHKNKDLEQELNDKKSQLESIPTVEDKSSELENEINNVDSQINEKNSKNEETDHKNKELEQQLSDKKAQLESIPTVEDKSSDLENELKSVEQSINEKNANNDKTDRHNKELEHQLEEEKNNMEELINQKNSMNEDTDKKNKELEEQLESKKKEL"
     misc_feature    1..>1613
                     /locus_tag="TVAGG3_0358090"
                     /old_locus_tag="TVAG_2v0358090"
                     /note="helix-rich Mycoplasma protein; Region:
                     Mplasa_alph_rch; TIGR04523"
                     /db_xref="CDD:275316"
ORIGIN      
gaaatcaagaacatcaattcacatatcaacgaaaagaattcaaagaactcagaaactgacaagaagaacaaagatcttgaacaagagttgaatgataagaaagctcaacttgaatccattccaaccgttgaagacaaatcatccgaactcgaaaacgaaatcaagaacatcaattcacatatcaatgacaagaattcaaagaactcagaaaccgatcataagaacaaggaccttgaacaagagttgaatgataagaagtctcaacttgaatccattccaaccgttgaagacaaatcatccgaactcgaaaacgaaatcaagaacatcaattcacatatcaacgaaaagaattcaaagaactcagaaactgacaagaagaacaaagatcttgaacaagagttgaatgataagaaagctcaacttgaatctattccaaccgttgaagacaaatcatccgaactcgaaaacgaaatcaagaacatcaattcacatatcaacgaaaagaattcaaagaactcagaaactgacaagaagaacaaagatcttgaacaagagttgaatgataagaagtctcaacttgaatctattccaacagttggagacaagtcatccgaactcgaaaatgaaatcaagaacatcaattctcagatcaacgaaaagaattcaaagaactcagaaaccgatcataagaacaaggaccttgaacaagagttgaatgataagaaacaagaacttgaatccattccaacagtagaagacaagtcatccgaacttgaaaatgaaatcaataatgttgattctcagatcaatgacaagaattcaaagaactcagaaaccgatcataagaacaaggaccttgaacaagagttgaatgataagaagtctcaacttgaatccattccaaccgttgaagacaaatcatccgaactcgaaaacgaaatcaagaacatcaattcacatatcaacgaaaagaattcaaagaactcagaaactgacaagaagaacaaagatcttgaacaagagttgaatgataagaaagctcaacttgaatccattccaaccgttgaagacaaatcatccgaacttgaaaacgaacttaagaagattgattctcagatcaatgacaagaattcaaagaactcagaaaccgatcataagaacaaggaccttgaacaagagttgaatgataagaagtctcaacttgaatccattccaaccgttgaagacaaatcatccgaacttgaaaatgaaatcaataatgttgattctcagatcaacgaaaagaattccaagaatgaagagaccgatcataagaacaaggaactagaacaacaactttccgataagaaggcgcaattagaatcaattccaactgttgaagacaagtcatccgatcttgagaatgaacttaagtctgttgaacaatccatcaacgaaaagaacgcaaataacgataaaacagacagacataacaaggaactcgaacatcaacttgaagaagaaaagaataacatggaagaattaatcaatcaaaagaattctatgaacgaagataccgacaagaagaacaaggaactcgaagaacagctcgaatcgaagaagaaggaacttga
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]