LOCUS       XM_051117820            1694 bp    mRNA    linear   VRT 26-FEB-2023
DEFINITION  PREDICTED: Labeo rohita ST6
            (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,
            3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5b
            (st6galnac5b), transcript variant X1, mRNA.
ACCESSION   XM_051117820
VERSION     XM_051117820.1
DBLINK      BioProject: PRJNA887821
KEYWORDS    RefSeq.
SOURCE      Labeo rohita (rohu)
  ORGANISM  Labeo rohita
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Cyprinidae; Labeoninae; Labeonini; Labeo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_066876) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_022985175.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/26/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1694
                     /organism="Labeo rohita"
                     /mol_type="mRNA"
                     /strain="BAU-BD-2019"
                     /isolation_source="riverine"
                     /db_xref="taxon:84645"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="blood"
                     /dev_stage="adult"
     gene            1..1694
                     /gene="st6galnac5b"
                     /note="ST6
                     (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,
                     3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5b;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 24 Proteins"
                     /db_xref="GeneID:127170062"
     CDS             6..737
                     /gene="st6galnac5b"
                     /codon_start=1
                     /product="alpha-N-acetylgalactosaminide
                     alpha-2,6-sialyltransferase 5b"
                     /protein_id="XP_050973777.1"
                     /db_xref="GeneID:127170062"
                     /translation="

MHCKSCALVTSSGHMTESGRGAEIDRKECVIRMNDAPTRGYQRDVGQRTSLRVVAHSSMQRVLRNRHELLNSSQNTTFIFWGPGNYMRQDGKGLVYNNLRLLKQMMPKLQIYVISKLKMLHFDELFKKETGKDRKRSNSWLSTGWFTMAIALEICDRINVYGMISPEFCKLPNLEPSVPYHYYEPAGPDECKMYLSHEQGRHGSHHRFITEKRVFANWARMFNIHFYQPDWRPAPVAQNSTDS"

     misc_feature    9..611
                     /gene="st6galnac5b"
                     /note="Glycosyltransferase family 29 (sialyltransferase);
                     Region: Glyco_transf_29; pfam00777"
                     /db_xref="CDD:425864"
     polyA_site      1694
                     /gene="st6galnac5b"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

ttaggatgcattgcaaaagctgtgccttagtgaccagctctggccacatgaccgaaagtggtcgaggtgcggagatcgaccgcaaggagtgcgttatccgtatgaacgacgccccaacacgaggctaccagagggacgtgggccagcgaacgagtctgcgtgtggtcgcacattccagcatgcaacgtgtgctacgaaaccgccacgagctgctcaactccagccagaacaccacatttatcttctgggggccgggaaactacatgcgacaagacggtaaaggccttgtctacaacaacctgcgtctgctgaagcagatgatgcctaaactacagatttacgtcatctcgaagctgaagatgctgcattttgatgagctttttaaaaaggaaacaggaaaagatagaaaaaggtccaattcatggctcagcacaggttggttcactatggcgattgcattggagatttgtgacagaatcaacgtctatggcatgatttcacctgagttctgcaagttgcccaacctcgagccctcagtgccgtatcactactacgagcctgcggggccagatgaatgtaaaatgtatctctcccacgagcagggccggcacggcagccaccaccgtttcatcacagagaaacgtgtctttgccaactgggctcgtatgttcaacatacacttctatcaaccggactggagaccggcacctgtagcacagaacagcacagactcatgaggttcaaacactgggctgtttctgggactcggagactttgtgtccttttaaggacaaatggatttgaacgtttgaactggaacacattatgaatgaaagtctattatgatgttatttgaggattgaaaagcaacgactttaattcaaggtacttattggacatttttgctgaacgttttaattgcaaaagctgtgatgaatgttaaatgtgtcaagaacaaacagttcagtattcacgttacttattaatggcaaccgtgtgatccacgttggttcataattcagaaaactgggttactgtataattatatcacattttctgtttccagaaattactagtttgatatctaggccatattgttctccatgtgtaatttcatttaaattatacatagagcctcaataatttgtgccgcgtggagagtgtcaagcacataatgttacaaatttctcctctcagtggcatctaaagagaaccatttacaaattgtgcattttccaaatgacacttttaacacagggccttaatagattggtctgatttggttttgtacatgtgaaaaagatgtttttctcgtaaattaagctgtaaatatagctttatgtgaatattgtaatgttctcagtagttttcagtagtcttcactccaaatcagaggttcccagaacacttcatgctaggaaccaccttggcttatgggagctgctctggcctaatgggatatcatgctatgagttctgcttattcgcagtggccagtgaatgtgcctagcacaacaacgactgtccctcaggaagtctagggaaattggagggctttaaaggacgcggaagtctgtaaatgaggctggcctttgattctgctctgctgccttctactgtaatcagtcacccgaggcaacaccgtgattacggatgaccttggatcaggcaggaggcctgaataaaataaacgtg

//