GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-05-05 02:09:11, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_050871010             441 bp    mRNA    linear   INV 30-SEP-2022
DEFINITION  PREDICTED: Eriocheir sinensis probable DNA-directed RNA polymerase
            subunit delta (LOC127003906), mRNA.
ACCESSION   XM_050871010
VERSION     XM_050871010.1
DBLINK      BioProject: PRJNA883401
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Eriocheir sinensis (Chinese mitten crab)
  ORGANISM  Eriocheir sinensis
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea;
            Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda;
            Pleocyemata; Brachyura; Eubrachyura; Grapsoidea; Varunidae;
            Eriocheir.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_066534) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: Eriocheir sinensis Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 100% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..441
                     /organism="Eriocheir sinensis"
                     /mol_type="mRNA"
                     /db_xref="taxon:95602"
                     /chromosome="26"
                     /sex="male"
                     /tissue_type="muscle"
                     /dev_stage="adult"
                     /breed="Jianghai 21"
     gene            1..441
                     /gene="LOC127003906"
                     /note="probable DNA-directed RNA polymerase subunit delta;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 Protein"
                     /db_xref="GeneID:127003906"
     CDS             1..441
                     /gene="LOC127003906"
                     /codon_start=1
                     /product="probable DNA-directed RNA polymerase subunit
                     delta"
                     /protein_id="XP_050726967.1"
                     /db_xref="GeneID:127003906"
                     /translation="
MDEEDAEDEVNAEDKVDAEDKVDAEDKVDAEDEVDAEDEVDAEDEVDAEDEVDAEDKVDAEDEVDAEDEVDAKDEVDAEDEVDAEDEVESEDEVDAEDEVDAEDEVDAEDETARVKAARHRAEVKRNLDEQVTESLLALCEAACCQ"
     misc_feature    4..>324
                     /gene="LOC127003906"
                     /note="RNA polymerase sigma factor; Provisional; Region:
                     PRK05901"
                     /db_xref="CDD:235640"
ORIGIN      
atggacgaagaagacgcagaagacgaagtaaacgcagaagacaaagtagacgcagaagacaaagtagacgcagaagacaaagtagacgcagaagacgaagtagacgcagaagacgaagtagacgcagaagacgaagtagacgcagaagacgaagtagacgcagaagacaaagtagacgcagaagacgaagtagacgcagaagacgaagtagacgcaaaagacgaagtagacgcagaagacgaagtagacgcagaagacgaagtagagtcagaagacgaagtagacgcagaagacgaagtagacgcagaagacgaagtagacgcagaagacgaaacggcacgggtgaaagctgcccgccaccgcgcggaggtgaaaagaaacctggacgagcaggttacagaaagcctgttggctctttgcgaggctgcctgctgtcagtga
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]