2024-05-04 22:47:46, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_049986080 3268 bp mRNA linear INV 10-AUG-2022 DEFINITION PREDICTED: Schistocerca gregaria uncharacterized LOC126292216 (LOC126292216), transcript variant X6, mRNA. ACCESSION XM_049986080 VERSION XM_049986080.1 DBLINK BioProject: PRJNA859116 KEYWORDS RefSeq. SOURCE Schistocerca gregaria ORGANISM Schistocerca gregaria Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera; Acrididea; Acridomorpha; Acridoidea; Acrididae; Cyrtacanthacridinae; Schistocerca. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_064928) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: Schistocerca gregaria Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3268 /organism="Schistocerca gregaria" /mol_type="mRNA" /isolate="iqSchGreg1" /isolation_source="Lab reared F1 progeny of a mate pair that was field collected near Samburu, Kenya as immature adults." /db_xref="taxon:7010" /chromosome="9" /sex="male" /tissue_type="thorax and abdomen" /dev_stage="5th instar" /country="Kenya: Samburu" /lat_lon="1.38477 N 37.23045 E" /collection_date="2020-10-26" gene 1..3268 /gene="LOC126292216" /note="uncharacterized LOC126292216; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 long SRA reads, 1 Protein" /db_xref="GeneID:126292216" CDS 60..2606 /gene="LOC126292216" /codon_start=1 /product="uncharacterized protein LOC126292216 isoform X4" /protein_id="XP_049842037.1" /db_xref="GeneID:126292216" /translation="
MGECSTLGQNLPSDDATIPTKVFKNDICRLIDLPERHTDPGSETEFSFQEEETDLCCRSSETSSSEWSERNAVGRVEFEIRSPNEGPNPFGDSSTASDASVNELQVVGLPPPKTWDNAGNSSCASSGSSDVFDPEIPRRDYWTCLQCSNVNNRPAFRYCEKCYKVRRDMYQPRVKPRKRRKRKSSKGVATARNSIAMKAVSERTTSTNKFQPNSTMFRDTFKSCDDLKTSPIAFSGVKLESCSQENRDSGVACSQSSGVACSQSTVASALPASGKDSDSSLSPDSGADTREFHGIKLSSTREHSLKVSSLGLDLRQSVDVVDLLARVTRREACVIASQSNNLHQDSSRNDSTSQTSCRDVQRAESLWPSQSQAVHAVRTLYRSVDEVDAVEPYINQCVDEVDTVNLSSSQGVDEVNTVHPSTVQGVDEVDAVHPSMSPGVNEVNTVHPSMSPGVDEVDAVHPSTSQGVDEVDAVHPSTSQGVDEVDAVHPSTSQGVDEVDAVHPSTSQGVDEVDAVHPSTSQGVDEVDAVHPSTSQGVDEVDAVHPSTSQGVDEVDAVHPSTSQGVDEVDAVRPSTSQGVDEVDAVRPSTSQGVDEVDAVRPSTSQGVDEVDAVRPSTSQGVDEVDAVRPSTSQGVDEVDAVRPSTSQGVDEVDAVRPSTSEGVDEVDAVRPSTSQGVDEDDAVLPSTSQGVDEVDAVRPSTGQSADEVDSACPSTGCDVVKVDAVWPPVSQSVDEVDTGQQHTSRIVDEVDYVQHSSKGSVYELRSVKTQTDLCFISKSDIPKEKPIVDVDKCMTCYSRSLDGIFVHSKYAHMCCCYKCTVRVWKTTKRCPLCNCKVMNVLRLFKGC"
misc_feature <1374..>2183 /gene="LOC126292216" /note="Uncharacterized membrane protein YhgE, phage infection protein (PIP) family [Function unknown]; Region: YhgE; COG1511" /db_xref="CDD:224428" misc_feature 2433..2588 /gene="LOC126292216" /note="RING finger (Really Interesting New Gene) domain and U-box domain superfamily; Region: RING_Ubox; cl17238" /db_xref="CDD:450175" misc_feature order(2439..2441,2448..2450,2490..2492,2496..2498, 2508..2510,2517..2519,2550..2552,2559..2561) /gene="LOC126292216" /note="cross-brace motif; other site" /db_xref="CDD:438111" polyA_site 3268 /gene="LOC126292216" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
gcaagtcgcgacaagaaagttgcaaacgtagtgctaagtgcagtgagtagtaacgaaatatgggtgaatgcagtactcttggtcaaaacctgccatcagatgatgccaccatcccaaccaaggtcttcaaaaatgacatttgtaggttgattgatttgccagagcgccatacggatcctggatcagagactgagttttcatttcaggaagaagaaacagatttatgttgccgcagcagcgaaacgtctagcagtgagtggtcagagagaaatgcagtaggtcgtgtcgaatttgaaatacggtcacctaatgaagggccgaatccttttggtgatagcagtactgcgagtgatgccagtgtgaacgagcttcaagttgttgggcttccaccacccaagacatgggacaacgcaggaaattctagttgtgcttcatcaggcagctctgacgtctttgatccagaaatcccgaggagggattactggacgtgtctgcagtgcagcaacgtgaacaacagacctgcattccgatactgcgagaaatgttacaaggtgaggcgggacatgtaccagccgcgggtgaaaccgaggaagaggagaaagaggaagagctcaaagggagtggccactgcaaggaattccatagctatgaaggcagtcagtgagaggactacaagcacaaataaatttcagcccaacagtacaatgttcagagacacttttaaaagctgtgatgatttgaaaacatcaccaatagcttttagtggagtaaaactggaatcgtgttcccaggagaacagggacagtggtgtagcttgcagccagagcagtggtgtggcttgtagtcagagcacagttgcctctgccctgccagcaagtggcaaagacagtgactccagcctgagtccagactctggtgccgatacgcgggaattccatggcatcaagctctccagcaccagagagcacagtttgaaagtcagctcactgggactcgacttgagacaaagtgttgatgtagtcgatttgttagcacgtgttacacgtcgagaagcttgtgtgattgcctcacagtcaaataatttacatcaagacagcagtcgaaatgactcaacatcacagacatcgtgtcgagatgttcagagagctgaatccttgtggccttctcagagtcaagctgttcatgctgtgcggactttgtatagaagtgtggatgaggttgatgctgtggagccttacataaatcagtgtgttgatgaagttgacactgtgaatctctcctcgagtcagggtgttgatgaagtcaacactgtgcatccttcgactgttcagggtgttgatgaagtagacgctgtgcatccttccatgagtccgggtgttaatgaagtaaacactgtgcatccttccatgagtccgggtgttgatgaagtcgacgctgtgcatccttccacgagtcagggtgttgatgaagtcgacgctgtgcatccttccacgagtcagggtgttgatgaagttgacgctgtgcatccttccacgagtcagggtgttgatgaagtcgacgctgtgcatccttccacgagtcagggtgttgatgaagtcgacgctgtgcatccttccacgagtcagggtgttgatgaagtcgacgctgtgcatccttccacgagtcagggtgttgatgaagtcgacgctgtgcatccttccacgagtcagggcgttgatgaagtcgacgctgtgcatccttccacgagtcagggcgttgatgaagtcgacgctgtgcggccttccacgagtcagggcgttgatgaagtcgacgctgtgcggccttccacgagtcagggcgttgatgaagtcgacgctgtgcggccttccacgagtcagggcgttgatgaagtcgacgctgtgcggccttccacgagtcagggcgttgatgaagtcgacgctgtgcggccttccacgagtcagggcgttgatgaagtcgacgctgtgcggccttccacgagtcagggcgttgatgaagtcgacgctgtgcggccttccacgagtgagggcgttgatgaagtcgacgctgtgcggccttccacgagtcagggcgttgatgaagacgacgctgtgctgccttccacgagtcagggcgttgatgaagtcgacgctgtgcggccttccacgggtcagagtgctgatgaagttgactctgcgtgcccttccacaggttgtgatgttgttaaagttgatgctgtttggcctcctgtgagtcagagtgttgatgaagtggacactgggcagcaacacacaagtcggattgttgatgaggttgactatgtgcagcattccagtaagggaagtgtctatgaactgcgctctgtgaaaactcagactgatctctgctttatttcaaagagtgacataccgaaagaaaagcccattgttgatgtcgataaatgtatgacgtgttattcgagatcactggatggaatttttgtgcattcgaaatatgcacatatgtgctgttgctataaatgcacagtgagagtgtggaaaactacaaaacgttgccctctatgtaattgtaaagtgatgaacgtgctacgcttgttcaaaggatgttgaaaacattaggtaagacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaattaaaatcccatgaagtgcaatgttgcagaatgctagacttgtcttactagtgaaacatagtgctaggagtatagtgcttttgtcatttgcaactctcaaagagctttttgttaattttctgttattgccagctgaatacgggttcacattcctctgtgcagtcactttcaaattagtggatgtgtgtttcttcctcctatctggtgaaaagtggctagtaaaggaacatgattctggcctatgatcagacacccacaatgcatctttaaaatgtatgaagcatagggctcatggcacaatgaagacatctagtaagcactacaggagagaacattacttttgtgtgtatggcttgtgatgtcactggcaaacagaatatgcaaaatgaaatgaacggaatggtgcaatatagaactgcaatttgtgcccatttagccttttttctgtatcacgtatgtgatgttaaaactttatgcaaagaacagtgcaacaatatatcatatgctctgttgtaagaataatttatttctgttgttgatgagatctcattatgtagtgaaatgttgaatttgtgacctaataaacttgttaacttgtt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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