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2024-05-04 22:47:46, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_049986080            3268 bp    mRNA    linear   INV 10-AUG-2022
DEFINITION  PREDICTED: Schistocerca gregaria uncharacterized LOC126292216
            (LOC126292216), transcript variant X6, mRNA.
ACCESSION   XM_049986080
VERSION     XM_049986080.1
DBLINK      BioProject: PRJNA859116
KEYWORDS    RefSeq.
SOURCE      Schistocerca gregaria
  ORGANISM  Schistocerca gregaria
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Polyneoptera; Orthoptera; Caelifera;
            Acrididea; Acridomorpha; Acridoidea; Acrididae;
            Cyrtacanthacridinae; Schistocerca.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_064928) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: Schistocerca gregaria Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3268
                     /organism="Schistocerca gregaria"
                     /mol_type="mRNA"
                     /isolate="iqSchGreg1"
                     /isolation_source="Lab reared F1 progeny of a mate pair
                     that was field collected near Samburu, Kenya as immature
                     adults."
                     /db_xref="taxon:7010"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="thorax and abdomen"
                     /dev_stage="5th instar"
                     /country="Kenya: Samburu"
                     /lat_lon="1.38477 N 37.23045 E"
                     /collection_date="2020-10-26"
     gene            1..3268
                     /gene="LOC126292216"
                     /note="uncharacterized LOC126292216; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 12
                     long SRA reads, 1 Protein"
                     /db_xref="GeneID:126292216"
     CDS             60..2606
                     /gene="LOC126292216"
                     /codon_start=1
                     /product="uncharacterized protein LOC126292216 isoform X4"
                     /protein_id="XP_049842037.1"
                     /db_xref="GeneID:126292216"
                     /translation="
MGECSTLGQNLPSDDATIPTKVFKNDICRLIDLPERHTDPGSETEFSFQEEETDLCCRSSETSSSEWSERNAVGRVEFEIRSPNEGPNPFGDSSTASDASVNELQVVGLPPPKTWDNAGNSSCASSGSSDVFDPEIPRRDYWTCLQCSNVNNRPAFRYCEKCYKVRRDMYQPRVKPRKRRKRKSSKGVATARNSIAMKAVSERTTSTNKFQPNSTMFRDTFKSCDDLKTSPIAFSGVKLESCSQENRDSGVACSQSSGVACSQSTVASALPASGKDSDSSLSPDSGADTREFHGIKLSSTREHSLKVSSLGLDLRQSVDVVDLLARVTRREACVIASQSNNLHQDSSRNDSTSQTSCRDVQRAESLWPSQSQAVHAVRTLYRSVDEVDAVEPYINQCVDEVDTVNLSSSQGVDEVNTVHPSTVQGVDEVDAVHPSMSPGVNEVNTVHPSMSPGVDEVDAVHPSTSQGVDEVDAVHPSTSQGVDEVDAVHPSTSQGVDEVDAVHPSTSQGVDEVDAVHPSTSQGVDEVDAVHPSTSQGVDEVDAVHPSTSQGVDEVDAVHPSTSQGVDEVDAVRPSTSQGVDEVDAVRPSTSQGVDEVDAVRPSTSQGVDEVDAVRPSTSQGVDEVDAVRPSTSQGVDEVDAVRPSTSQGVDEVDAVRPSTSEGVDEVDAVRPSTSQGVDEDDAVLPSTSQGVDEVDAVRPSTGQSADEVDSACPSTGCDVVKVDAVWPPVSQSVDEVDTGQQHTSRIVDEVDYVQHSSKGSVYELRSVKTQTDLCFISKSDIPKEKPIVDVDKCMTCYSRSLDGIFVHSKYAHMCCCYKCTVRVWKTTKRCPLCNCKVMNVLRLFKGC"
     misc_feature    <1374..>2183
                     /gene="LOC126292216"
                     /note="Uncharacterized membrane protein YhgE, phage
                     infection protein (PIP) family [Function unknown]; Region:
                     YhgE; COG1511"
                     /db_xref="CDD:224428"
     misc_feature    2433..2588
                     /gene="LOC126292216"
                     /note="RING finger (Really Interesting New Gene) domain
                     and U-box domain superfamily; Region: RING_Ubox; cl17238"
                     /db_xref="CDD:450175"
     misc_feature    order(2439..2441,2448..2450,2490..2492,2496..2498,
                     2508..2510,2517..2519,2550..2552,2559..2561)
                     /gene="LOC126292216"
                     /note="cross-brace motif; other site"
                     /db_xref="CDD:438111"
     polyA_site      3268
                     /gene="LOC126292216"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
gcaagtcgcgacaagaaagttgcaaacgtagtgctaagtgcagtgagtagtaacgaaatatgggtgaatgcagtactcttggtcaaaacctgccatcagatgatgccaccatcccaaccaaggtcttcaaaaatgacatttgtaggttgattgatttgccagagcgccatacggatcctggatcagagactgagttttcatttcaggaagaagaaacagatttatgttgccgcagcagcgaaacgtctagcagtgagtggtcagagagaaatgcagtaggtcgtgtcgaatttgaaatacggtcacctaatgaagggccgaatccttttggtgatagcagtactgcgagtgatgccagtgtgaacgagcttcaagttgttgggcttccaccacccaagacatgggacaacgcaggaaattctagttgtgcttcatcaggcagctctgacgtctttgatccagaaatcccgaggagggattactggacgtgtctgcagtgcagcaacgtgaacaacagacctgcattccgatactgcgagaaatgttacaaggtgaggcgggacatgtaccagccgcgggtgaaaccgaggaagaggagaaagaggaagagctcaaagggagtggccactgcaaggaattccatagctatgaaggcagtcagtgagaggactacaagcacaaataaatttcagcccaacagtacaatgttcagagacacttttaaaagctgtgatgatttgaaaacatcaccaatagcttttagtggagtaaaactggaatcgtgttcccaggagaacagggacagtggtgtagcttgcagccagagcagtggtgtggcttgtagtcagagcacagttgcctctgccctgccagcaagtggcaaagacagtgactccagcctgagtccagactctggtgccgatacgcgggaattccatggcatcaagctctccagcaccagagagcacagtttgaaagtcagctcactgggactcgacttgagacaaagtgttgatgtagtcgatttgttagcacgtgttacacgtcgagaagcttgtgtgattgcctcacagtcaaataatttacatcaagacagcagtcgaaatgactcaacatcacagacatcgtgtcgagatgttcagagagctgaatccttgtggccttctcagagtcaagctgttcatgctgtgcggactttgtatagaagtgtggatgaggttgatgctgtggagccttacataaatcagtgtgttgatgaagttgacactgtgaatctctcctcgagtcagggtgttgatgaagtcaacactgtgcatccttcgactgttcagggtgttgatgaagtagacgctgtgcatccttccatgagtccgggtgttaatgaagtaaacactgtgcatccttccatgagtccgggtgttgatgaagtcgacgctgtgcatccttccacgagtcagggtgttgatgaagtcgacgctgtgcatccttccacgagtcagggtgttgatgaagttgacgctgtgcatccttccacgagtcagggtgttgatgaagtcgacgctgtgcatccttccacgagtcagggtgttgatgaagtcgacgctgtgcatccttccacgagtcagggtgttgatgaagtcgacgctgtgcatccttccacgagtcagggtgttgatgaagtcgacgctgtgcatccttccacgagtcagggcgttgatgaagtcgacgctgtgcatccttccacgagtcagggcgttgatgaagtcgacgctgtgcggccttccacgagtcagggcgttgatgaagtcgacgctgtgcggccttccacgagtcagggcgttgatgaagtcgacgctgtgcggccttccacgagtcagggcgttgatgaagtcgacgctgtgcggccttccacgagtcagggcgttgatgaagtcgacgctgtgcggccttccacgagtcagggcgttgatgaagtcgacgctgtgcggccttccacgagtcagggcgttgatgaagtcgacgctgtgcggccttccacgagtgagggcgttgatgaagtcgacgctgtgcggccttccacgagtcagggcgttgatgaagacgacgctgtgctgccttccacgagtcagggcgttgatgaagtcgacgctgtgcggccttccacgggtcagagtgctgatgaagttgactctgcgtgcccttccacaggttgtgatgttgttaaagttgatgctgtttggcctcctgtgagtcagagtgttgatgaagtggacactgggcagcaacacacaagtcggattgttgatgaggttgactatgtgcagcattccagtaagggaagtgtctatgaactgcgctctgtgaaaactcagactgatctctgctttatttcaaagagtgacataccgaaagaaaagcccattgttgatgtcgataaatgtatgacgtgttattcgagatcactggatggaatttttgtgcattcgaaatatgcacatatgtgctgttgctataaatgcacagtgagagtgtggaaaactacaaaacgttgccctctatgtaattgtaaagtgatgaacgtgctacgcttgttcaaaggatgttgaaaacattaggtaagacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaattaaaatcccatgaagtgcaatgttgcagaatgctagacttgtcttactagtgaaacatagtgctaggagtatagtgcttttgtcatttgcaactctcaaagagctttttgttaattttctgttattgccagctgaatacgggttcacattcctctgtgcagtcactttcaaattagtggatgtgtgtttcttcctcctatctggtgaaaagtggctagtaaaggaacatgattctggcctatgatcagacacccacaatgcatctttaaaatgtatgaagcatagggctcatggcacaatgaagacatctagtaagcactacaggagagaacattacttttgtgtgtatggcttgtgatgtcactggcaaacagaatatgcaaaatgaaatgaacggaatggtgcaatatagaactgcaatttgtgcccatttagccttttttctgtatcacgtatgtgatgttaaaactttatgcaaagaacagtgcaacaatatatcatatgctctgttgtaagaataatttatttctgttgttgatgagatctcattatgtagtgaaatgttgaatttgtgacctaataaacttgttaacttgtt
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]