2024-04-30 06:07:20, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_049493573 2711 bp mRNA linear PLN 23-JUL-2022 DEFINITION PREDICTED: Solanum verrucosum uncharacterized LOC125814121 (LOC125814121), mRNA. ACCESSION XM_049493573 VERSION XM_049493573.1 DBLINK BioProject: PRJNA849659 KEYWORDS RefSeq; includes ab initio. SOURCE Solanum verrucosum ORGANISM Solanum verrucosum Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_026019954) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: Solanum verrucosum Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 10% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..2711 /organism="Solanum verrucosum" /mol_type="mRNA" /db_xref="taxon:315347" /chromosome="Unknown" gene 1..2711 /gene="LOC125814121" /note="uncharacterized LOC125814121; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 ESTs, 2 Proteins" /db_xref="GeneID:125814121" CDS 1..2409 /gene="LOC125814121" /codon_start=1 /product="uncharacterized protein LOC125814121" /protein_id="XP_049349530.1" /db_xref="GeneID:125814121" /translation="
MSDYPVLDNLPIDKWKVPALREELKRRNLMTKGLKDDLVNRLNNAIHRERGEPEVEESTEINPDILEWNNKSMGHPQNKVIKGSDRDTDPANATKVLDEVATGGTDDVSGVREHSEASVGSTSVINEIVSTDQFVEVKIDKKHEVIDSSLNNDVVDEVSGVRYAAIQSSGTVQDIEVMRISSSEGVLEDNLRRQENDAEVTPVTSKDALGNNSIKLEDEGLKLSGMDAEYDKSNPDTQVYEVNPDLGSQVKSDAFSTDTLPINENNDLNDNLNADNVKLVTEVVRQEKESSSKDLSDVGSIYPLDDQMPHEMQGHVGETVDDKSSEVKFSMKKAIADQVSVAVTKVEHGLESNTLNNREQKDVQFVKARTLGDVIDPSLSPKKVEVSAKDKHCIAASNDDRKVLSKISEVVDDQNMEKINLDQSSADDSMEEDVVETKHVAFDHISKENDKTEESITGMTKEPKVVRNGSSDATQQDNPSEKVESPQETKDGSPELSEKRKFQDEVGDGSKEPAKRQRRWNTENLNTAEPQNSSIALSENLVQTIPVKPIFGRTDSTVSEDAPKERLVPKSSKTATNSLKIENFLRPFTLKAVQELLARTGEVCSFWMDQIKTHCYVTYSSVEEAIETRNAVYNLQWPPKGGRLLVADFVAPQQVQTKIDGREPATPATNRSPAAPPASSSVQAPPAWQQVESEHPLARQPPPAPPTALPIKERLAPPAWQQGRKQQVESEHPLTRQAPPAPPTATPMKERLAPPVADKNDPPVITLDDIFRKTKAAPRIYYLPLTDEEVAKKLASRGGAEN"
misc_feature 34..138 /gene="LOC125814121" /note="SAP domain; Region: SAP; pfam02037" /db_xref="CDD:426575" misc_feature 40..>330 /gene="LOC125814121" /note="poly [ADP-ribose] polymerase; Provisional; Region: PLN03124" /db_xref="CDD:215591" misc_feature 1726..1989 /gene="LOC125814121" /note="RNA recognition motif (RRM) found in apoptotic chromatin condensation inducer in the nucleus (acinus) and similar proteins; Region: RRM_ACINU; cd12432" /db_xref="CDD:409866" misc_feature <2245..2391 /gene="LOC125814121" /note="RNSP1-SAP18 binding (RSB) motif; Region: RSB_motif; pfam16294" /db_xref="CDD:435259" polyA_site 2711 /gene="LOC125814121" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
atgtcggactatcccgtgcttgataatctccccattgataaatggaaggtaccagcattaagggaagagcttaagaggaggaacttaatgacaaaaggtttgaaggatgatcttgttaatcgattaaataatgctatccacagagaaagaggagaaccggaggttgaagagagtactgaaataaatcctgatattcttgaatggaataataaaagtatggggcatccccaaaacaaagttattaagggttctgatcgtgatactgatcctgccaatgccaccaaagtcttggatgaggttgcaactgggggtactgatgacgtttctggagtaagagaacattcagaggcttctgttggtagcactagtgttataaatgagattgtgtctactgatcaatttgttgaagtcaaaattgataagaaacacgaggttatcgattcttctctgaacaacgatgttgttgatgaggtatctggagttaggtatgctgctattcagagcagtggcactgtacaggacattgaagttatgagaatttcatcttctgagggagtgcttgaggataaccttaggagacaagagaatgatgccgaggtaaccccagtaacatccaaggatgccttgggaaacaatagcattaagttggaggatgagggtctgaaactctcaggcatggatgctgagtatgataagtccaatccagacactcaggtatatgaggtcaaccctgatttagggtctcaagtaaaatctgacgcattttctactgatactttgcccattaatgaaaataatgatttaaatgataatttgaatgctgataatgttaaattagtaactgaagttgttaggcaagagaaggagtcatccagcaaagatctgtcagatgttggtagcatttatccattggatgatcagatgccacatgagatgcagggtcatgttggagaaactgttgatgacaaatcttcggaggtgaaatttagcatgaaaaaggccattgcagatcaggtttctgttgctgttaccaaggtagagcatggtttagaaagtaacacattgaataatcgtgagcaaaaagatgttcagtttgtaaaagctagaactttaggtgatgttatagaccctagtttgtcacccaagaaagttgaggtatctgctaaagataaacattgtattgctgcttccaatgatgatagaaaagttttgagcaagatatctgaggtagttgatgatcagaatatggaaaagataaatttggatcaatcttcagctgatgattccatggaggaggatgtagtagagacaaagcatgtggcttttgatcatatttctaaggagaatgataagactgaagagtctattacgggaatgacaaaagagcccaaagttgtacgaaatggctcttctgatgcaacacagcaagacaatccttctgagaaggttgagtctcctcaagaaactaaagatgggtctcctgaattgtcagagaagagaaagtttcaagatgaagtaggagatgggagtaaagagcctgcaaaaaggcagcgcagatggaacactgagaatttgaatactgctgagccacaaaattcaagtattgcattatcagagaacttggttcagaccatccctgtcaagcctatctttggcaggaccgactctacagttagtgaggatgcacccaaggagcgccttgtaccaaagtcttccaaaacagccactaattctctcaaaattgagaacttcttgcggccctttacgctgaaagctgtgcaagagctccttgcaagaactggtgaagtctgcagtttctggatggaccagataaagacccattgctatgtcacgtattcttcggtagaggaagccatagagacccgaaatgctgtttacaacctccaatggccaccaaaaggaggtcgtctcctggttgcagattttgttgctccccaacaggtgcaaaccaagatagacggacgggagcctgctactccagcgacaaatcgcagtcctgcagcgcctccagcttcatcctctgttcaagcaccacctgcttggcagcaggttgagtcagaacatccactcgcgcgccagccaccacctgctcctcctactgcgctaccaataaaagagaggttggctccacctgcttggcagcagggtcgcaaacaacaggttgagtcagaacatccactcacgcgccaggcaccacctgctcctcctactgcgacaccaatgaaagagaggttggctccacctgttgctgataaaaatgacccccctgttattactttggatgacatcttcagaaagaccaaagccgctccccgtatctattatttaccgctgactgatgaagaagttgctaaaaagcttgccagtagaggaggtgctgagaactagagcttttaagtgaacaaaggacttattagatagatggtatatggagaggtgttgcgatgtaatgctgataactgctaattttgccctcacagagaagttgcagtcttgaggctcacttaagaccttgctttcttttctattttcgttgttaatggttactgcaaggttgaagtctactgtattatactttgggttgaagaaacataacaaaatgtgcagagtctgccttctttcttcatccagattcatcgttgaattgcgccgaagctgtaaatgccatttatctccaatcgttttcttta
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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