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2024-04-30 06:07:20, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_049493573            2711 bp    mRNA    linear   PLN 23-JUL-2022
DEFINITION  PREDICTED: Solanum verrucosum uncharacterized LOC125814121
            (LOC125814121), mRNA.
ACCESSION   XM_049493573
VERSION     XM_049493573.1
DBLINK      BioProject: PRJNA849659
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Solanum verrucosum
  ORGANISM  Solanum verrucosum
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; asterids; lamiids; Solanales; Solanaceae;
            Solanoideae; Solaneae; Solanum.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026019954) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: Solanum verrucosum Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 10% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2711
                     /organism="Solanum verrucosum"
                     /mol_type="mRNA"
                     /db_xref="taxon:315347"
                     /chromosome="Unknown"
     gene            1..2711
                     /gene="LOC125814121"
                     /note="uncharacterized LOC125814121; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 5
                     ESTs, 2 Proteins"
                     /db_xref="GeneID:125814121"
     CDS             1..2409
                     /gene="LOC125814121"
                     /codon_start=1
                     /product="uncharacterized protein LOC125814121"
                     /protein_id="XP_049349530.1"
                     /db_xref="GeneID:125814121"
                     /translation="
MSDYPVLDNLPIDKWKVPALREELKRRNLMTKGLKDDLVNRLNNAIHRERGEPEVEESTEINPDILEWNNKSMGHPQNKVIKGSDRDTDPANATKVLDEVATGGTDDVSGVREHSEASVGSTSVINEIVSTDQFVEVKIDKKHEVIDSSLNNDVVDEVSGVRYAAIQSSGTVQDIEVMRISSSEGVLEDNLRRQENDAEVTPVTSKDALGNNSIKLEDEGLKLSGMDAEYDKSNPDTQVYEVNPDLGSQVKSDAFSTDTLPINENNDLNDNLNADNVKLVTEVVRQEKESSSKDLSDVGSIYPLDDQMPHEMQGHVGETVDDKSSEVKFSMKKAIADQVSVAVTKVEHGLESNTLNNREQKDVQFVKARTLGDVIDPSLSPKKVEVSAKDKHCIAASNDDRKVLSKISEVVDDQNMEKINLDQSSADDSMEEDVVETKHVAFDHISKENDKTEESITGMTKEPKVVRNGSSDATQQDNPSEKVESPQETKDGSPELSEKRKFQDEVGDGSKEPAKRQRRWNTENLNTAEPQNSSIALSENLVQTIPVKPIFGRTDSTVSEDAPKERLVPKSSKTATNSLKIENFLRPFTLKAVQELLARTGEVCSFWMDQIKTHCYVTYSSVEEAIETRNAVYNLQWPPKGGRLLVADFVAPQQVQTKIDGREPATPATNRSPAAPPASSSVQAPPAWQQVESEHPLARQPPPAPPTALPIKERLAPPAWQQGRKQQVESEHPLTRQAPPAPPTATPMKERLAPPVADKNDPPVITLDDIFRKTKAAPRIYYLPLTDEEVAKKLASRGGAEN"
     misc_feature    34..138
                     /gene="LOC125814121"
                     /note="SAP domain; Region: SAP; pfam02037"
                     /db_xref="CDD:426575"
     misc_feature    40..>330
                     /gene="LOC125814121"
                     /note="poly [ADP-ribose] polymerase; Provisional; Region:
                     PLN03124"
                     /db_xref="CDD:215591"
     misc_feature    1726..1989
                     /gene="LOC125814121"
                     /note="RNA recognition motif (RRM) found in apoptotic
                     chromatin condensation inducer in the nucleus (acinus) and
                     similar proteins; Region: RRM_ACINU; cd12432"
                     /db_xref="CDD:409866"
     misc_feature    <2245..2391
                     /gene="LOC125814121"
                     /note="RNSP1-SAP18 binding (RSB) motif; Region: RSB_motif;
                     pfam16294"
                     /db_xref="CDD:435259"
     polyA_site      2711
                     /gene="LOC125814121"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
atgtcggactatcccgtgcttgataatctccccattgataaatggaaggtaccagcattaagggaagagcttaagaggaggaacttaatgacaaaaggtttgaaggatgatcttgttaatcgattaaataatgctatccacagagaaagaggagaaccggaggttgaagagagtactgaaataaatcctgatattcttgaatggaataataaaagtatggggcatccccaaaacaaagttattaagggttctgatcgtgatactgatcctgccaatgccaccaaagtcttggatgaggttgcaactgggggtactgatgacgtttctggagtaagagaacattcagaggcttctgttggtagcactagtgttataaatgagattgtgtctactgatcaatttgttgaagtcaaaattgataagaaacacgaggttatcgattcttctctgaacaacgatgttgttgatgaggtatctggagttaggtatgctgctattcagagcagtggcactgtacaggacattgaagttatgagaatttcatcttctgagggagtgcttgaggataaccttaggagacaagagaatgatgccgaggtaaccccagtaacatccaaggatgccttgggaaacaatagcattaagttggaggatgagggtctgaaactctcaggcatggatgctgagtatgataagtccaatccagacactcaggtatatgaggtcaaccctgatttagggtctcaagtaaaatctgacgcattttctactgatactttgcccattaatgaaaataatgatttaaatgataatttgaatgctgataatgttaaattagtaactgaagttgttaggcaagagaaggagtcatccagcaaagatctgtcagatgttggtagcatttatccattggatgatcagatgccacatgagatgcagggtcatgttggagaaactgttgatgacaaatcttcggaggtgaaatttagcatgaaaaaggccattgcagatcaggtttctgttgctgttaccaaggtagagcatggtttagaaagtaacacattgaataatcgtgagcaaaaagatgttcagtttgtaaaagctagaactttaggtgatgttatagaccctagtttgtcacccaagaaagttgaggtatctgctaaagataaacattgtattgctgcttccaatgatgatagaaaagttttgagcaagatatctgaggtagttgatgatcagaatatggaaaagataaatttggatcaatcttcagctgatgattccatggaggaggatgtagtagagacaaagcatgtggcttttgatcatatttctaaggagaatgataagactgaagagtctattacgggaatgacaaaagagcccaaagttgtacgaaatggctcttctgatgcaacacagcaagacaatccttctgagaaggttgagtctcctcaagaaactaaagatgggtctcctgaattgtcagagaagagaaagtttcaagatgaagtaggagatgggagtaaagagcctgcaaaaaggcagcgcagatggaacactgagaatttgaatactgctgagccacaaaattcaagtattgcattatcagagaacttggttcagaccatccctgtcaagcctatctttggcaggaccgactctacagttagtgaggatgcacccaaggagcgccttgtaccaaagtcttccaaaacagccactaattctctcaaaattgagaacttcttgcggccctttacgctgaaagctgtgcaagagctccttgcaagaactggtgaagtctgcagtttctggatggaccagataaagacccattgctatgtcacgtattcttcggtagaggaagccatagagacccgaaatgctgtttacaacctccaatggccaccaaaaggaggtcgtctcctggttgcagattttgttgctccccaacaggtgcaaaccaagatagacggacgggagcctgctactccagcgacaaatcgcagtcctgcagcgcctccagcttcatcctctgttcaagcaccacctgcttggcagcaggttgagtcagaacatccactcgcgcgccagccaccacctgctcctcctactgcgctaccaataaaagagaggttggctccacctgcttggcagcagggtcgcaaacaacaggttgagtcagaacatccactcacgcgccaggcaccacctgctcctcctactgcgacaccaatgaaagagaggttggctccacctgttgctgataaaaatgacccccctgttattactttggatgacatcttcagaaagaccaaagccgctccccgtatctattatttaccgctgactgatgaagaagttgctaaaaagcttgccagtagaggaggtgctgagaactagagcttttaagtgaacaaaggacttattagatagatggtatatggagaggtgttgcgatgtaatgctgataactgctaattttgccctcacagagaagttgcagtcttgaggctcacttaagaccttgctttcttttctattttcgttgttaatggttactgcaaggttgaagtctactgtattatactttgggttgaagaaacataacaaaatgtgcagagtctgccttctttcttcatccagattcatcgttgaattgcgccgaagctgtaaatgccatttatctccaatcgttttcttta
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]