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Previous release (v1)
2025-11-16 08:09:51, GGRNA.v2 : RefSeq release 232 (Sep, 2025)
LOCUS XM_048734512 2744 bp mRNA linear INV 21-JUN-2022
DEFINITION PREDICTED: Nematostella vectensis DNA ligase 1-like (LOC116610563),
mRNA.
ACCESSION XM_048734512
VERSION XM_048734512.1
DBLINK BioProject: PRJNA847078
KEYWORDS RefSeq; includes ab initio.
SOURCE Nematostella vectensis (starlet sea anemone)
ORGANISM Nematostella vectensis
Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria;
Edwardsiidae; Nematostella.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_064044) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Nematostella vectensis Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 9.0
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
##RefSeq-Attributes-START##
ab initio :: 5% of CDS bases
##RefSeq-Attributes-END##
FEATURES Location/Qualifiers
source 1..2744
/organism="Nematostella vectensis"
/mol_type="mRNA"
/db_xref="taxon:45351"
/chromosome="11"
gene 1..2744
/gene="LOC116610563"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 95% coverage of the annotated
genomic feature by RNAseq alignments, including 1 sample
with support for all annotated introns"
/db_xref="GeneID:116610563"
CDS 192..2744
/gene="LOC116610563"
/codon_start=1
/product="DNA ligase 1-like"
/protein_id="XP_048590469.1"
/db_xref="GeneID:116610563"
/translation="
MTDELQEKELENDRQYQTIVDLKDELKSLTASAKEMKQNQNESEELAACRSELEKAKEEIEKARASYDKEKDRLEKLNKEMTDELKEKELENDRQYQTIIDLKDELKSLTASAKEMKQNQNESEELAACRSELEKAKEEIEKARASYDKEKDRLEKLNKEMTDELQEKELENDRQYQTIVDLKDELKSLTASAKEMKQNQNESEELAACRSELEEAKEEIEKAWALYDKEKDRLEKLNRQMTDELQEKELENDRQYQTIVDLKDELKSLTASHKEMKQNQNGSEELAACRSELEKAREEIEKAWALYDKEKDRLEKLNRQMTDELQEKELENDRQYQTIVDLKDELKSLTASQKEMKQNQNGSEELDACRSELEKAKEEIEKARASYDKEKDRLEKLNKEMTDELQEKELENDRQYQTIVDLKDELKSLTASAKEMKQNQNGSEELDACRSELEKAKEEIEKARASYDKEKDRLEKLNKEMTDELQEKELENDRQYQTIVDLKDELKSLTASAKEMKQNQNESEELAACRSELEEAKEEIEKAWALYDKEKDRLEKLNRQMTDELQEKELENDRQYQTIVDLKDELKSLTASHKEMKQNQNGSEELAACRSELEKAREEIEKAWALYDKEKDRLEKLNRQMTDELQEKELENDRQYQTIVDLKDELKSLTASQKEMKQNQNGSEELDACRSELEKAKEEIEKAWALYDKEKDRLEKLNRQMTDKLQEKELENDRQYQTIVDLKDELKSLTASHKETKQNNNGSEELAACKSELEKAKEEIDKAWALYDKEKDRLEKINWQMTGKVLICNYSDGLVLSSPSVFGIPDETLALVFHILHEYEQSLASTDRFN"
misc_feature 195..2537
/gene="LOC116610563"
/note="chromosome segregation protein SMC, common
bacterial type; Region: SMC_prok_B; TIGR02168"
/db_xref="CDD:274008"
ORIGIN
tgagagctgattctgattgactgtgctgactaacattgattataatacttctttccttttagcaaaatcagaatgaaagtgaagaacttgctgcatgtagatctgaacttgagaaagcgaaggaggagatagagaaagcccgggcatcatacgacaaagagaaagatcgccttgaaaaactgaacaaggaaatgacagatgagctccaggagaaagaattagaaaatgatcgtcaatatcaaacaattgttgatttgaaagatgagctgaagtcattaacagcaagcgctaaggagatgaagcaaaatcagaatgaaagtgaagaacttgctgcatgtagatctgaacttgagaaagcgaaggaggagatagagaaagcccgggcatcatacgacaaagagaaagatcgccttgaaaaactgaacaaggaaatgacagatgagctcaaggagaaagaattagaaaatgatcgtcaatatcaaacaattattgatttgaaagatgagctgaagtcattaacagcaagcgctaaggagatgaagcaaaatcagaatgaaagtgaagaacttgctgcatgtagatctgaacttgagaaagcgaaggaggagatagagaaagcccgggcatcatacgacaaagagaaagatcgccttgaaaaactgaacaaggaaatgacagatgagctccaggagaaagaattagaaaatgatcgtcaatatcaaacaattgttgatttgaaagatgagctgaagtcattaacagcaagcgctaaggagatgaagcaaaatcagaatgaaagtgaagaacttgctgcatgtagatctgaattggaggaagcgaaggaggagatagagaaagcctgggcattatacgacaaagagaaagaccgccttgaaaaactcaacaggcaaatgacagatgagctccaggagaaagaattagaaaatgatcgtcaatatcaaacaattgttgatttgaaagatgagctgaagtcattaacggcaagccataaggagatgaagcaaaatcagaatggaagtgaagaacttgctgcatgtagatctgaattggagaaagcgagggaggagatagagaaagcctgggcattatacgacaaagaaaaagatcgccttgaaaaactcaacaggcaaatgacagatgagctccaggagaaagaattagaaaatgatcgtcaatatcaaacaattgttgatttgaaagatgagctgaagtcattaacagcaagccagaaggagatgaagcaaaatcagaatggaagtgaagaacttgatgcatgtagatctgaattggagaaagcgaaggaggagatagagaaagcccgggcatcatacgacaaagagaaagatcgccttgaaaaactgaacaaggaaatgacagatgagctccaggagaaagaattagaaaatgatcgtcaatatcaaacaattgttgatttgaaagatgagctgaagtcattaacagcaagcgctaaggagatgaagcaaaatcagaatggaagtgaagaacttgatgcatgtagatctgaattggagaaagcgaaggaggagatagagaaagcccgggcatcatacgacaaagagaaagatcgccttgaaaaactgaacaaggaaatgacagatgagctccaggagaaagaattagaaaatgatcgtcaatatcaaacaattgttgatttgaaagatgagctgaagtcattaacagcaagcgctaaggagatgaagcaaaatcagaatgaaagtgaagaacttgctgcatgtagatctgaattggaggaagcgaaggaggagatagagaaagcctgggcattatacgacaaagagaaagaccgccttgaaaaactcaacaggcaaatgacagatgagctccaggagaaagaattagaaaatgatcgtcaatatcaaacaattgttgatttgaaagatgagctgaagtcattaacggcaagccataaggagatgaagcaaaatcagaatggaagtgaagaacttgctgcatgtagatctgaattggagaaagcgagggaggagatagagaaagcctgggcattatacgacaaagaaaaagatcgccttgaaaaactcaacaggcaaatgacagatgagctccaggagaaagaattagaaaatgatcgtcaatatcaaacaattgttgatttgaaagatgagctgaagtcattaacagcaagccagaaggagatgaagcaaaatcagaatggaagtgaagaacttgatgcatgtagatctgaattggagaaagcgaaggaggagatagagaaagcctgggcattatacgacaaagagaaagaccgccttgaaaaactcaacaggcaaatgacagataagctccaggagaaagaattagaaaatgatcgtcaatatcaaacaattgttgatttgaaagatgagctgaagtcattaacagcaagccataaggagacgaagcaaaataacaatggaagtgaagaacttgctgcgtgtaaatctgaactggagaaagcaaaggaggagattgataaggcctgggcactatacgacaaagagaaagatcgcctggagaaaatcaactggcaaatgacaggtaaagtgctgatatgtaattattcagacggcctcgtactttcatctccctcggtgtttggaatccctgatgaaacactcgcacttgtttttcatatattacatgaatacgaacaaagcctggcaagcactgacaggttcaattag
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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