GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-05-06 08:08:18, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_048402354            1047 bp    mRNA    linear   INV 26-MAY-2022
DEFINITION  PREDICTED: Haliotis rufescens clumping factor B-like
            (LOC125383657), mRNA.
ACCESSION   XM_048402354
VERSION     XM_048402354.1
DBLINK      BioProject: PRJNA839416
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Haliotis rufescens (red abalone)
  ORGANISM  Haliotis rufescens
            Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Gastropoda;
            Vetigastropoda; Lepetellida; Haliotoidea; Haliotidae; Haliotis.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_025963957) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Haliotis rufescens Annotation
                                           Release 101
            Annotation Version          :: 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 100% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1047
                     /organism="Haliotis rufescens"
                     /mol_type="mRNA"
                     /isolate="VD_foot"
                     /db_xref="taxon:6454"
                     /chromosome="Unknown"
                     /tissue_type="foot muscle"
                     /dev_stage="adult"
                     /country="USA: Van Damme State Park, CA"
                     /lat_lon="39.269 N 123.798 W"
                     /collection_date="2020-02-07"
                     /collected_by="Blythe Marshman"
     gene            1..1047
                     /gene="LOC125383657"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins"
                     /db_xref="GeneID:125383657"
     CDS             1..1047
                     /gene="LOC125383657"
                     /codon_start=1
                     /product="clumping factor B-like"
                     /protein_id="XP_048258311.1"
                     /db_xref="GeneID:125383657"
                     /translation="
MSRRVVSMDQYEACGLLMERAASLVSGNESRLHLLVVRESNYRVRLIRRIESDNETENDTQIESDNETDSHKESDNETDSQKESDIIESDNETENDTQIESDNETDSQKESDNETDSQIESDNETESDPKIETDSQIDTDSQIESDNETDSQKESDNETDSQIESDNETESVTQIETDSQIDTDSQIESDNETESQKESDNETDSQIESDNETESDTQIESDNETESDTQIETDSQIDTDSQIESDNETDSQKESDNETDSQIESDNETETDTQIETDTQIDTDSQIESDNETETDTQIETDTQIDTDTQIEFDNETDTDTEIEFSTKTYMHNESLPITARSVNRTRL"
     misc_feature    <196..927
                     /gene="LOC125383657"
                     /note="Midasin, AAA ATPase with vWA domain, involved in
                     ribosome maturation [Translation, ribosomal structure and
                     biogenesis]; Region: MDN1; COG5271"
                     /db_xref="CDD:227596"
ORIGIN      
atgtcacgaagggttgtttctatggatcaatacgaagcctgtggtctcctcatggagcgagctgcgtctttagtctctggtaatgagagtcgcctgcacctactagttgttcgtgagagcaattatcgtgtccgactcatcaggagaatagagtccgacaacgagactgaaaatgacacacagatagagtctgacaacgagactgactcacacaaagagtctgacaacgagactgactcacagaaagagtctgacatcatagagtctgacaacgagactgaaaatgacacacagatagagtctgacaacgagactgactcacagaaagagtctgacaacgagactgactcacagatagagtctgacaacgagactgagtctgacccaaagatagagactgactcacagatagatactgactcgcagatagagtctgacaacgagactgactcacagaaagagtctgacaacgagactgactcacagatagagtctgacaacgagactgagtctgtaacacagatagagactgactcacagatagatactgactcgcagatagagtctgacaacgagactgaatcacagaaagagtctgacaacgagactgactcacagatagagtctgacaacgagactgagtctgacacacagatagagtctgacaacgagactgagtctgacacacagatagagactgactcacagatagatactgactcgcagatagagtccgacaacgagactgactcacagaaagagtctgacaacgagactgactcacagatagagtctgacaacgagactgagactgacacacagatagagactgacacacagattgatactgactcgcagatagagtctgacaacgagactgagactgacacacagatagagactgacacacagattgatactgacacacagatagagtttgacaacgagactgacactgacacagagattgagtttagcacaaagacctacatgcacaatgagtcacttcccataactgcccgcagcgtgaacagaacacgtctgtag
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]