2024-05-06 08:08:18, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_048402354 1047 bp mRNA linear INV 26-MAY-2022 DEFINITION PREDICTED: Haliotis rufescens clumping factor B-like (LOC125383657), mRNA. ACCESSION XM_048402354 VERSION XM_048402354.1 DBLINK BioProject: PRJNA839416 KEYWORDS RefSeq; includes ab initio. SOURCE Haliotis rufescens (red abalone) ORGANISM Haliotis rufescens Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Gastropoda; Vetigastropoda; Lepetellida; Haliotoidea; Haliotidae; Haliotis. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_025963957) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Haliotis rufescens Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 100% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..1047 /organism="Haliotis rufescens" /mol_type="mRNA" /isolate="VD_foot" /db_xref="taxon:6454" /chromosome="Unknown" /tissue_type="foot muscle" /dev_stage="adult" /country="USA: Van Damme State Park, CA" /lat_lon="39.269 N 123.798 W" /collection_date="2020-02-07" /collected_by="Blythe Marshman" gene 1..1047 /gene="LOC125383657" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:125383657" CDS 1..1047 /gene="LOC125383657" /codon_start=1 /product="clumping factor B-like" /protein_id="XP_048258311.1" /db_xref="GeneID:125383657" /translation="
MSRRVVSMDQYEACGLLMERAASLVSGNESRLHLLVVRESNYRVRLIRRIESDNETENDTQIESDNETDSHKESDNETDSQKESDIIESDNETENDTQIESDNETDSQKESDNETDSQIESDNETESDPKIETDSQIDTDSQIESDNETDSQKESDNETDSQIESDNETESVTQIETDSQIDTDSQIESDNETESQKESDNETDSQIESDNETESDTQIESDNETESDTQIETDSQIDTDSQIESDNETDSQKESDNETDSQIESDNETETDTQIETDTQIDTDSQIESDNETETDTQIETDTQIDTDTQIEFDNETDTDTEIEFSTKTYMHNESLPITARSVNRTRL"
misc_feature <196..927 /gene="LOC125383657" /note="Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]; Region: MDN1; COG5271" /db_xref="CDD:227596" ORIGIN
atgtcacgaagggttgtttctatggatcaatacgaagcctgtggtctcctcatggagcgagctgcgtctttagtctctggtaatgagagtcgcctgcacctactagttgttcgtgagagcaattatcgtgtccgactcatcaggagaatagagtccgacaacgagactgaaaatgacacacagatagagtctgacaacgagactgactcacacaaagagtctgacaacgagactgactcacagaaagagtctgacatcatagagtctgacaacgagactgaaaatgacacacagatagagtctgacaacgagactgactcacagaaagagtctgacaacgagactgactcacagatagagtctgacaacgagactgagtctgacccaaagatagagactgactcacagatagatactgactcgcagatagagtctgacaacgagactgactcacagaaagagtctgacaacgagactgactcacagatagagtctgacaacgagactgagtctgtaacacagatagagactgactcacagatagatactgactcgcagatagagtctgacaacgagactgaatcacagaaagagtctgacaacgagactgactcacagatagagtctgacaacgagactgagtctgacacacagatagagtctgacaacgagactgagtctgacacacagatagagactgactcacagatagatactgactcgcagatagagtccgacaacgagactgactcacagaaagagtctgacaacgagactgactcacagatagagtctgacaacgagactgagactgacacacagatagagactgacacacagattgatactgactcgcagatagagtctgacaacgagactgagactgacacacagatagagactgacacacagattgatactgacacacagatagagtttgacaacgagactgacactgacacagagattgagtttagcacaaagacctacatgcacaatgagtcacttcccataactgcccgcagcgtgaacagaacacgtctgtag
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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