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2024-05-06 00:49:29, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_048395783            2676 bp    mRNA    linear   INV 26-MAY-2022
DEFINITION  PREDICTED: Haliotis rufescens proline-rich extensin-like protein
            EPR1 (LOC125379630), mRNA.
ACCESSION   XM_048395783
VERSION     XM_048395783.1
DBLINK      BioProject: PRJNA839416
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Haliotis rufescens (red abalone)
  ORGANISM  Haliotis rufescens
            Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Gastropoda;
            Vetigastropoda; Lepetellida; Haliotoidea; Haliotidae; Haliotis.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_025963829) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Haliotis rufescens Annotation
                                           Release 101
            Annotation Version          :: 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 100% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2676
                     /organism="Haliotis rufescens"
                     /mol_type="mRNA"
                     /isolate="VD_foot"
                     /db_xref="taxon:6454"
                     /chromosome="Unknown"
                     /tissue_type="foot muscle"
                     /dev_stage="adult"
                     /country="USA: Van Damme State Park, CA"
                     /lat_lon="39.269 N 123.798 W"
                     /collection_date="2020-02-07"
                     /collected_by="Blythe Marshman"
     gene            1..2676
                     /gene="LOC125379630"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins"
                     /db_xref="GeneID:125379630"
     CDS             1..2676
                     /gene="LOC125379630"
                     /codon_start=1
                     /product="proline-rich extensin-like protein EPR1"
                     /protein_id="XP_048251740.1"
                     /db_xref="GeneID:125379630"
                     /translation="
MATPTIPPPHLSRTVIMAPPTIPPPHLSKTVIMATPTIPPPHLSRTVIMAPPTIPPPHLSRTVIMATPIIPPPHLSRTVIMAPPTIPPPHLSRTVIMATPIIPPPHLSRTVIMAPPTIPPPHLSRTVIMATPTIPPPHLSRTVIMAPPPIPPPHLSRTVIMAPPTIPPPHLSRTVIMAPPTIPPPHLSRTVIMAPPTIPPPHLSRTVIMATPTIPPPHLSRTVIMATPTIPPPHLSRTVIMAPPTIPPPHLSRTVIMATPTIPSPHLSRTVIMAPPTIPPPHLSRTVIMAPPTIPPPHLSRTVIMATPTIPSPHLSRTVIMAPPTIPPPHLSRTVIMAPPTIPPPHLSRTVIMAPPTIPPPHLSRTVIMATPTIPPPYFSRTVIMAPPTIPPPHLSRTVIMATPTIPPPNLSRTVIMAPPTIPPPHLSRTVIMATPTIPPPHLSRTVIMAPPTIPPPHLSRTVIMAPPTIPPPHLSRTVIMATPTIPSPHLSRTVIMAPPTIPPPHLSRTVIMATPTIPPSHLSRTVIMATPTIPPLHLSRTVIMAPPTIPPPHLSRTVIMATPTIPSPHLSRTVIMAPPTIPPPHLSRTVIMAPPTIPPPHLSRTVIMATPTIPPPHLSRTVIMAPPTIPPPNLSRTVIMATPTIPPPHLSRTAIMAPPTIPPPHLSRTVIMGTPTIPSPHLSRTVIMAPPTIPPTHLSRTVIMAPPTIPPPHLSRTVIMATPTIPPPHLSRTVIMAPPTVPPPHLSRTVIMAPPTIPPPHLSRTVIMATPTIPPPHLSRTVIMAPPPIPPPHLSRTVIMAPPTIPSPHLSRTVIMATPTIPPPHLSRTVIMAPPTVPPPHLSRTVIMAPPTIPPPHLSAQSSWHHLPFHHLTCQNSHHGNTPHSTTSLV"
     misc_feature    <4..1284
                     /gene="LOC125379630"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    <667..2283
                     /gene="LOC125379630"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
ORIGIN      
atggcaacacctaccattccaccacctcacttgtctagaacagtcatcatggcaccacctaccattccaccacctcacttgtctaaaacagtcatcatggcaacacctaccattccaccacctcacttgtctagaacagtcatcatggcaccacctaccattccaccacctcacttgtctagaacagtcatcatggcaacacctatcattccaccacctcacttgtctagaacagtcatcatggcaccacctaccattccaccacctcacttgtctagaacagtcatcatggcaacacctatcattccaccacctcacttgtctagaacagtcatcatggcaccacctaccattccaccacctcacttgtctagaacagtcatcatggcaacacctaccattccaccacctcacttgtctagaacagtcatcatggcaccacctcccattccaccacctcacttgtctagaacagtcatcatggcaccacctaccattccaccacctcacttgtctagaacagtcatcatggcaccacctaccattccaccacctcacttgtctagaacagtcatcatggcaccacctaccattccaccacctcacttgtctagaacagtcatcatggcaacacctaccattccaccacctcacttgtctagaacagtcatcatggcaacacctaccattccaccacctcacttgtctagaacagtcatcatggcaccacctaccattccaccacctcacttgtctagaacagtcatcatggcaacacctaccattccatcacctcacttgtctagaacagtcatcatggcaccacctaccattccaccacctcacttgtctagaacagtcatcatggcaccacctaccattccaccacctcacttgtctagaacagtcattatggcaacacctaccattccatcacctcacttgtctagaacagtcatcatggcaccacctaccattccaccacctcacttgtctagaacagtcatcatggcaccacctaccattccaccacctcacttgtctagaacagtcatcatggcaccacctaccattccaccacctcacttgtctagaacagtcatcatggcaacacctaccattccaccaccttacttttctagaacagtcatcatggcaccacctaccattccaccacctcacttgtctagaacagtcatcatggcaacacctaccattccaccacctaacttgtctagaacagtcatcatggcaccacctaccattccaccacctcacttgtctagaacagtcatcatggcaacacctaccattccaccacctcacttgtctagaacagtcatcatggcaccacctaccattccaccacctcacttgtctagaacagtcatcatggcaccacctaccattccaccacctcacttgtctagaacagtcatcatggcaacacctaccattccatcacctcacttgtctagaacagtcatcatggcaccacctaccattccaccacctcacttgtctagaacagtcatcatggcaacacctaccattccaccatctcacctgtctagaacagtcatcatggcaacacctaccattccaccacttcacttgtctagaacagtcatcatggcaccacctaccattccaccacctcacttgtctagaacagtcatcatggcaacacctaccattccatcacctcacttgtctagaacagtcatcatggcaccacctaccattccaccacctcacttgtctagaacagtcatcatggcaccacctaccattccaccacctcacttgtctagaacagtcatcatggcaacacctaccattccaccacctcacttgtctagaacagtcatcatggcaccacctaccattccaccacctaacttgtctagaacagtcatcatggcaacacctaccattccaccccctcacttgtctagaacagccatcatggcaccacctaccattccaccacctcacttgtctagaacagtcatcatgggaacacctaccattccatcacctcacttgtctagaacagtcatcatggcaccacctaccattccaccaactcacttgtctagaacagtcatcatggcaccacctaccattccaccacctcacttgtctagaacagtcatcatggcaacacctaccattccaccacctcacttgtctagaacagtcatcatggcaccacctaccgttccaccacctcacttgtctagaacagtcatcatggcaccacctaccattccaccacctcacttgtctagaacagtcatcatggcaacacctaccattccaccacctcacttgtctagaacagtcatcatggcaccacctcccattccaccacctcacttgtctagaacagtcatcatggcaccacctaccattccatcacctcacttgtctagaacagtcatcatggcaacacctaccattccaccacctcacttgtctagaacagtcatcatggcaccacctaccgttccaccacctcacttgtctagaacagtcatcatggcaccacctaccattccaccacctcatttgtcagcacagtcatcatggcatcacctaccattccaccacctcacttgtcagaacagtcatcatggcaacacaccccattccaccacctcacttgtctag
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]