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Previous release (v1)
2025-12-13 18:14:46, GGRNA.v2 : RefSeq release 232 (Sep, 2025)
LOCUS XM_047297341 2544 bp mRNA linear PLN 28-MAR-2022
DEFINITION PREDICTED: Vigna umbellata protein NETWORKED 4B-like
(LOC124824825), mRNA.
ACCESSION XM_047297341
VERSION XM_047297341.1
DBLINK BioProject: PRJNA819033
KEYWORDS RefSeq.
SOURCE Vigna umbellata
ORGANISM Vigna umbellata
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50
kb inversion clade; NPAAA clade; indigoferoid/millettioid clade;
Phaseoleae; Vigna.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_025902602) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Vigna umbellata Annotation Release
100
Annotation Version :: 100
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 9.0
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..2544
/organism="Vigna umbellata"
/mol_type="mRNA"
/cultivar="VRB-3 Himshakti"
/db_xref="taxon:87088"
/chromosome="Unknown"
/tissue_type="leaf"
/dev_stage="Seedling"
/geo_loc_name="India"
gene 1..2544
/gene="LOC124824825"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 13 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 11 samples with support for all annotated
introns"
/db_xref="GeneID:124824825"
CDS 679..2370
/gene="LOC124824825"
/codon_start=1
/product="protein NETWORKED 4B-like"
/protein_id="XP_047153297.1"
/db_xref="GeneID:124824825"
/translation="
MMKNQPSQWWWLESHSNTRRSPWLQSTLTELNEKTKAMLKLIEEDADSFAQRAEMYYKKRPQLVSMVEDFYRTHRSLAERYDQIAGIRQQKTGGSPFSPLKHHQPEKLISFANDCYDSYSESCDVEESGESEIDDPEQEEDEDSIFNNCAELEEVQFERLGEENKDHKGQNKQKYNIYEAVMLREEIEQLRKENRVQKDELDRKSITFVELMMLREEIEQLRKENRAQKDELNQKDIICGEAMMLREEIEQLGKENRVLKDELSQKSIICGEVMMLREEIEQFRKENRAQKHELNQKDIICGKTMMPREEIEQLCKENIVLKDELNQKSIICGEVMMLKEEIEQLRKENRAQKDELHKKDNICSEIMMLREEIGQLGKENAALKDELNKKYIICGEIMMLREEIEQLRKYIRGQKNELHQKGIKCEVTMSREEKENRVKNDELNPEDSVCGEVVMLREEIKRLEKDERALKGTLSGEVMKLRQENSAQKDHLKQKDQEKIEVIRHLSLAIDMLKQENIRMRSFIAKESANKWKNPFGLKNFMGSLSEQLFNGITNNQPSLVAL"
misc_feature 703..924
/gene="LOC124824825"
/note="KIP1-like protein; Region: KIP1; pfam07765"
/db_xref="CDD:429647"
misc_feature <1213..>2175
/gene="LOC124824825"
/note="chromosome segregation protein SMC, common
bacterial type; Region: SMC_prok_B; TIGR02168"
/db_xref="CDD:274008"
polyA_site 2544
/gene="LOC124824825"
/experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN
aaaaaaaataattactagtcaaacaaattttattgccaccacaataatttagactcaaaatgaaacagccacccaagacagtgtcaccacaaactgatctgtcactagaaaatgcgtttattttgaattagtttgtagtttgggttcgaccgttgcaccaaaatttttgtcttcacatcacgctcctccgattttccatccaagtcccacgccagatactgcttttgccaaatcagaattatcgctaatcatcaatttaaataatgaattcgtcaattaagcactagttattgcattagtgaagctctaatttttctcataatcttcgtgcttttcaatttaaaccttccatagattatggcagcgggatcattgactgaactgtagcattttgaatttgagtgtgtttgtatgaattattactattatttttggtcgaggcaaagggttgattgtgaaatgttgagtagacgtgtcgtaagatgataggtggagggtttcagatgagacaaatcaagaatttcaaaaccgaaaacaacagtatatataaaatggttctattctaatctcttgctcttcgtgaactctaattccatcgcaggcggtggtggcaagcattgcattaattcatgctcttggtgttcgtgataacatagacaactgaggaggagggctaaaatgatgaagaatcaaccgtcacagtggtggtggcttgagagccacagtaacacaagacgatccccttggcttcaatccactctcacagagctaaatgagaagacaaaggcaatgttaaaactaattgaagaagatgcagattcctttgcccaacgtgctgagatgtattacaagaagagaccacaacttgtgagcatggttgaagacttctataggacacatcgatcattagctgagcggtatgatcaaatcgctggaattcgtcagcagaagactggagggtcccccttttctccactcaagcatcatcaaccagagaagttgataagttttgcgaatgactgttatgatagctattctgagagttgtgatgtagaggagtctggggaatctgaaattgatgatcctgagcaagaagaggatgaggattccatattcaataactgtgcagaactggaggaagttcagtttgagagacttggtgaagaaaacaaggatcataagggtcagaacaagcaaaaatataacatttacgaagcagtgatgttgagggaagaaatagagcaactcagaaaagagaacagggttcagaaggatgaactcgaccggaaaagcatcacttttgttgaattaatgatgctgagggaagaaatagagcaactaagaaaagagaatagagcacagaaggatgaactcaaccagaaagatatcatttgtggtgaagcaatgatgttgagggaagaaatagaacaactcggtaaagaaaatagagttctgaaggatgaactaagccagaaaagtatcatttgtggtgaagtaatgatgttgagggaagaaatagagcaattcagaaaagagaatagagcgcagaagcatgaactcaaccagaaagatatcatttgtggtaaaacaatgatgccgagggaagaaatagagcaactctgtaaagagaatatagttctgaaggatgaactaaaccagaaaagtatcatttgtggtgaagtaatgatgttgaaggaagaaatagagcaactcaggaaagagaatagagcgcagaaggatgaactccacaagaaagacaacatttgcagtgaaataatgatgttgagggaagaaatagggcaattgggaaaagagaatgcagcgctgaaggatgaactcaacaagaaatatatcatttgtggagaaataatgatgttgagggaagaaatagaacaactcaggaaatatattagagggcagaagaatgaactccaccagaaaggtatcaagtgtgaagtaacgatgtcgagggaagaaaaagagaatagagtgaagaatgatgaactaaacccagaagacagcgtttgtggtgaagtagtgatgttaagggaagaaataaaacgacttgaaaaagatgaaagagcactaaaaggtaccctttctggtgaagtaatgaagttaaggcaggagaatagcgcgcagaaggaccatcttaagcaaaaagaccaagagaaaatagaggtgataagacacctgagtttagctatagatatgctgaagcaggagaacataaggatgagaagcttcattgctaaggaatctgccaacaaatggaagaatccatttgggttaaagaatttcatgggatcattatcagagcagttgtttaatggaattacaaataatcaacctagtcttgtagctctctagataaggttcacagagtaaataactaagttttgtagaacaatattaaaagagacctatgtacatgttatggggacctgctcaagtaacctacagatcttgtatacagtttagtatattcctaactaatccaagaccgagtatctagtggatttcctagacacttgtttttctaca
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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