LOCUS       XM_046691101            5672 bp    mRNA    linear   INV 14-FEB-2022
DEFINITION  PREDICTED: Haliotis rubra ephexin-1-like (LOC124257111), mRNA.
ACCESSION   XM_046691101
VERSION     XM_046691101.1
DBLINK      BioProject: PRJNA801670
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Haliotis rubra (blacklip abalone)
  ORGANISM  Haliotis rubra
            Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Gastropoda;
            Vetigastropoda; Lepetellida; Haliotoidea; Haliotidae; Haliotis.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_025767357) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Haliotis rubra Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio   :: 1% of CDS bases
            frameshifts :: corrected 2 indels
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-535               QXJH01000065.1     555193-555727       c
            536-602             QXJH01000065.1     554800-554866       c
            603-647             QXJH01000065.1     552242-552286       c
            648-768             QXJH01000065.1     549726-549846       c
            769-925             QXJH01000065.1     549072-549228       c
            926-949             QXJH01000065.1     547745-547768       c
            950-1116            QXJH01000065.1     546652-546818       c
            1117-1173           QXJH01000065.1     545580-545636       c
            1174-1352           QXJH01000065.1     545171-545349       c
            1353-1365           QXJH01000065.1     544558-544570       c
            1366-1448           QXJH01000065.1     544474-544556       c
            1449-1650           QXJH01000065.1     543778-543979       c
            1651-1740           QXJH01000065.1     542283-542372       c
            1741-1913           QXJH01000065.1     541253-541425       c
            1914-2099           QXJH01000065.1     540344-540529       c
            2100-2176           QXJH01000065.1     539266-539342       c
            2177-2181           QXJH01000065.1     536097-536101       c
            2182-2281           QXJH01000065.1     535996-536095       c
            2282-5672           QXJH01000065.1     531930-535320       c
FEATURES             Location/Qualifiers
     source          1..5672
                     /organism="Haliotis rubra"
                     /mol_type="mRNA"
                     /isolate="DU_JTF1"
                     /isolation_source="Aquaculture farm"
                     /db_xref="taxon:36100"
                     /chromosome="Unknown"
                     /tissue_type="muscle"
                     /dev_stage="adult"
                     /geo_loc_name="Australia: Jade Tiger Abalone Farm,
                     Indented Head, Victoria"
                     /collection_date="2017"
                     /collected_by="Adam Miller"
     gene            1..5672
                     /gene="LOC124257111"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 2 bases in 2 codons;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 5 Proteins, and 97% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:124257111"
     CDS             100..2442
                     /gene="LOC124257111"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 2 bases in 2 codons"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: ephexin-1-like"
                     /protein_id="XP_046547057.1"
                     /db_xref="GeneID:124257111"
                     /translation="

MKHLVMSWRRCRPFHGAPVRGAVERGKRKNSVRQSRPSYQRTRDCLVPHLLPLPPRSSRVLNQTNIENSPPLPPRNQSTSGPTLDMVIPAPERAPSSHSTGDLRRKGQLSVSKDSYLHGQHLKSASLGDVPASMDHTDGNGEEFPDGYVDYDPSTGRTGKTESVDRRDFAKTSVKKKKGSFFRKTATADDRPASSTSSSGYIYPETDQWSPAGVEGQSLYQDLDDDQVYGRLGKEMKIKTSKFVNEPLYQYYTKENVIRANRKLKMEEAISDDDNVVKRKRKKEGGIYEDVEQMMQDGILTEEEAKSAEDISPSKRSTMLEVLGRTGSLHRALWCEMPEVKDKKVLETMEPQERKLQEAMFEIVTSEASYLKSLNILITVFLIAPEFSADHSDRCVVTKRERQVLFSNIGAIRDASEKFLADLEERWQTNCVMNDICDIIYNHSLKNFYGKRVEYVDAVRRLERNPECQSLPMSSFLLLPMQRITRLPLLVDAICHRLEPGSDRHKSSARALENLHRVVRKCNDGAKKMQQTEQMCILASQLDFKVKEIPLISSSRYIVKQAELTRISTDASSRIPFGKAFRGPSKQNMYLFLFNDMVMITKKKGNSYSVTDYCQRNSLHVEAIDNVEKCRLLPQGVPHGCKNLFLLVMLENFEKKQVEMVLACPSASDRTRWIDAVTPVQTSETERIYEDWDCPQVQCVKKYVAQEPDELSLEESDVVNVYKKTEDQWYEGERIRDGERGWFPACYTEEIMNSHVRSRNLRLRYRLLLASQQYTETVAK"

     misc_feature    1174..1671
                     /gene="LOC124257111"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Region: RhoGEF; smart00325"
                     /db_xref="CDD:214619"
     misc_feature    order(1183..1185,1195..1197,1486..1488,1519..1524,
                     1531..1536,1540..1545,1552..1557,1564..1569,1576..1578,
                     1654..1656,1666..1668)
                     /gene="LOC124257111"
                     /note="GTPase interaction site [polypeptide binding];
                     other site"
                     /db_xref="CDD:238091"
     misc_feature    1732..2142
                     /gene="LOC124257111"
                     /note="Ephexin Pleckstrin homology (PH) domain; Region:
                     PH_ephexin; cd01221"
                     /db_xref="CDD:269929"
     misc_feature    2185..2349
                     /gene="LOC124257111"
                     /note="Src homology 3 domain of ephexin-1-like SH3 domain
                     containing Rho guanine nucleotide exchange factors;
                     Region: SH3_ephexin1_like; cd11793"
                     /db_xref="CDD:212727"
     misc_feature    order(2200..2202,2206..2208,2215..2217,2227..2229,
                     2281..2286,2329..2331,2335..2340)
                     /gene="LOC124257111"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212727"
     polyA_site      5672
                     /gene="LOC124257111"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

tgaacaaaattggaaacaaatttggtaagattggtaaaactaaaggttctgaaccaccatcaatttcgaccggaactgattctgatatggaagctgtagatgaagcacttggtgatgagttggagaaggtgtcgtccctttcacggagctccagtgagaggagcagtggaaagaggcaaaagaaagaactcagtgagacagtctcgtccaagttatcagaggacgagggactgtcttgtcccacacctcctccccctcccaccaagatcgtcccgggttctaaaccaaacaaacatcgaaaactcgcccccacttcctccccggaatcagtcgacatccggacccacactggatatggtcattccggcaccggaaagggcgccgtcgtctcattccacaggtgaccttcgtcgtaaaggtcagctgagtgtgagcaaggacagttacctccatggccaacatctcaagtccgcatcacttggagacgtccctgcttccatggaccacacagatggcaatggcgaggaatttccagatggctatgtggattatgacccttccactgggcggactggcaagacagaatctgtcgacaggagagattttgctaagacatctgtgaagaaaaagaaaggatctttcttcagaaaaactgccacagctgatgaccggccagcatctagcacctcatcatctgggtacatctaccccgaaactgatcaatggagtcctgctggagtagagggacagtctctataccaagatcttgatgatgatcaggtgtacggccgactgggtaaagagatgaagataaaaacaagcaagtttgtcaatgagcctctctatcagtattacacgaaggagaacgtcatccgagctaaccgcaaactgaagatggaggaggccattagtgatgatgataatgttgttaagagaaagagaaagaaagaagggggaatatacgaagatgtggagcagatgatgcaagatgggatactgacagaggaggaggccaaatctgcggaggacatctcgccaagcaaacgctccaccatgttggaagtcctcggacgaacaggatcactgcacagagccctctggtgtgagatgccggaggttaaggataagaaggtgcttgagacaatggaaccgcaagagaggaaactgcaagaggcgatgtttgagatagtaacatcggaggcttcgtatctgaagagccttaacatcctcatcacggtgttcttgatcgcacccgagttctctgccgaccactccgaccgctgtgttgtgactaagagggagcgccaagtgctcttctctaacatcggtgctattagagatgccagtgaaaaattccttgctgacctggaggagaggtggcagaccaactgtgtgatgaatgacatctgtgatatcatctacaatcactccctgaagaacttttatgggaaacgcgtagagtacgtagatgctgtgcgtcgtctagagcgtaatcctgagtgccagtcactgccaatgtcgtcgttcctgttgctgccgatgcagagaatcaccagactgccacttttggtggatgccatttgtcaccgtctcgaaccaggttctgatcgacacaagtcttctgccagggctctggaaaatctccacagggtggtgcggaagtgcaatgatggagcgaaaaagatgcaacagacagagcagatgtgtatcttggcttcacagctagacttcaaggtcaaggaaatcccactcatctcatcctcacgatatattgtaaaacaagcggagcttacccgtatcagcaccgacgccagtagccgcataccgtttggcaaggcattcagaggacccagcaagcagaacatgtacctgtttctgttcaacgacatggtcatgatcaccaagaagaaaggcaactcttactctgtgactgattattgccaacggaactctcttcacgtggaggcaatagacaacgtagagaagtgtcgcctgctgccccagggtgtgccccatggctgcaagaacctgttcctgcttgtcatgttggagaacttcgagaagaagcaggttgagatggtcctggcatgtccatcagcgagcgacaggactcggtggattgatgcagtcactccagtacagacatcggaaacagaaagaatttatgaagactgggactgcccccaggtgcagtgtgtgaagaagtatgtagcccaggaaccggacgagttgagtctggaggagtcggatgtggtcaacgtctacaagaagactgaggaccagtggtatgagggagagcgtattcgtgacggtgaacggggctggttcccagcatgctacacagaagaaatcatgaactcacacgttcgatcccgtaatctacgccttaggtaccggctactgttggcatcgcaacaatacacggaaacggtcgccaaatagtcatgtgacgatcgaaaacaatgcaaattagtagagacacaatttcaagatgttgctaagcatccactaagacgtttcataaagtgaatttcagatgcttctatatgaagtttagcagcataaatgacatttcaaatgaagattttgcatggtatatatgcagtaaagaacatgaggacgattattgccaagtgtggcatcatttaaatgtcatgtgatcagaaactatgtacaaactagtcgtgtgacctttgacagtctttttgacgtgtcatgtgatgtgcgggtcacagtagtctactcgaagattgagttgcactcaacttacatatcagactctcatgaccatgttattgtatgttgattgtatgaagttattttgttgatattgagcatcagtggattctagcctgggtgttttactgctccttgttcacccaacattcagctagatcttgttcctgtggccaagtctctgtgaaattcttcgtcagtatttgtacattgtgtactagaatgtgataccagcttgagtgatgatgttgcaacagtttgtgtggtctggggctgtacagaacacagtgatgggggacatgtaaagcgggacatgtaaagtcacactgactggtgtatgtgattggttaacagcatgtgaagactggtcatggtcaaatacctttgatgcgtcaaggtacttggtgaatgtatgtgaggtcagtctgacctttgatgtgattggttaaaagcatgtgaaggctggacatggtcaaatacctttgatggttcgagacacgtaatggatatttgttggtttgatctgtatattctgagttaatactatgtgaagattggacatggtcaagttcctttgatgcgtcaaggtacttggtgaatgtatgtgaggtcagtctgacctttgatgtgattggttaacagcatgtgaagatttaacaaggataagtacctatggtacgtggttgatgtatgtgaggtcagtctgacctttgatgtgattggttaacagtatgtgaagattaaacaaggataagtacctatggtacatggttggtgtatgtgaggtcactctgacctttgatgtgattggttaacagcatgtgaagattaaacaaggataagtacctatggtacatggttgatgtatgtgaggtcactctgacctttgatgtgattggttaacagcatgtgtaggttacacaaggggatgaatgactacagtcggtgtgacgtgtatgatgtgatcaaccaataccaacacggtgtgatgctgcatgagttggaattatggccatggtttgatcaaggtcagcttgacctcagagagtatggaactgggtcagcttgatctgagttttggaataagggcaactgctttaatgtttcttcaagtcatgtcagaaggatagaagagggtcaagcacacaaaagagacttcaaggtaaggacctgaaggattgaattgagccaaggcatagttgctccttaaggtctccaccagcatgactagaaggatggaatcgagtcaagccatcactgattttcaaggtcaagctgccctgaagtctctgacaaggcatattccattttatttgcttaacttcaatgtatgatgtgtacctgtggaacggaccaaactgtcctttatatgtacagttgatgtaaattagaggtgttgtttcatgggtccaatccatcagcctgaccttgctgatcaagtgattcaagggttttacatgagagtcaacaaatgtgaaacaaactgagtgtaaacatccaaatgatggcatattttaacatgttcagcctggaacacacgactgaatttttatccttttaacatattaaagttaaattggaaaaggtatatgtgaaatacagttgctcaacttaacaaaggactgatctagtgcatagatattacatgaagcacctggtgcaaagacagagaaagaactgtcagaaactgttgcccacttgatatgctgttcccatggaactactagtatcatctttgtcatgcaaaatgaatatgctgtgacttttatttcatgacttgggatacaacatgttgattatttggcagacatgtgtttgtgtttctggttattgctgctattagtgcctattagcaccaaaggtgagatttcatgaaatgttccttatctggttgccatggttactctaccaagggtgtccagtcaaatactctgtaagctatgctaagcagatactttaatatgtaccacaagtctacagtatgtacatagttcatttattacacctccaggtattgtttcatttggcattaatggtttttgatattaaatacgcgtttgtgattattgtaaagaaaatatgtatttatgtttgtaatcaggaaatcatatatctcataattattcagttttcaactgtggttcttttgtaagaatggttaacactgctgacattagtaagggatttcaatgctgtatttaagatacttagtgccctgaacatgattagatttactatatactccaaccatttatgcatggagttgttagccaaagggtatcagaaaattatcatactttagcgaggatctgcttctcattggttggaatcctatatgtgtctcagttatcattttctctacctgccaatttttattatttttgtgtgaagattggacatggtcaagttcctttgatgcatcaaggtacctggtgaatgtatgttaggtatgtctgacctttgatgtgaagattaaacaaggataagtacctatggtatatggttgatgtatgtgaggtcagtctgacctttgatgtgattggttaacagcatgtatatactatatactagtagttgatatctggttgaagtcacagagtgtaaagaaaaaacagattgctaaaactagctggcttattatgaacaacttgcaatatgtcacagtgaacatgtgttaatttgaatggttcatcctcaaataattataaggggttagtatcttaaggccattggcagtcagtaaaaccaggaaatgtactaatgtcttaaaaatatactgaaagaaacaaataaaggaacacaaggaaattcaagtgttccttaaatattttcaagttttcatcaccaactttgaaagcgctgtgggaggaagtctgagaatagataaaggaacattgccatgaagttatgttcccttatttgtttccctcagtata

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