2024-04-24 16:28:50, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_046270610 3282 bp mRNA linear PLN 02-FEB-2022 DEFINITION Fusarium solani NRDE-2, necessary for RNA interference-domain-containing protein (B0J15DRAFT_387969), partial mRNA. ACCESSION XM_046270610 VERSION XM_046270610.1 DBLINK BioProject: PRJNA801211 BioSample: SAMN06297339 KEYWORDS RefSeq. SOURCE Fusarium solani ORGANISM Fusarium solani Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreomycetidae; Hypocreales; Nectriaceae; Fusarium; Fusarium solani species complex. REFERENCE 1 (bases 1 to 3282) AUTHORS Mesny,F., Miyauchi,S., Thiergart,T., Pickel,B., Atanasova,L., Karlsson,M., Huettel,B., Barry,K.W., Haridas,S., Chen,C., Bauer,D., Andreopoulos,W., Pangilinan,J., LaButti,K., Riley,R., Lipzen,A., Clum,A., Drula,E., Henrissat,B., Kohler,A., Grigoriev,I.V., Martin,F.M. and Hacquard,S. TITLE Genetic determinants of endophytism in the Arabidopsis root mycobiome JOURNAL Nat Commun (2021) In press REFERENCE 2 (bases 1 to 3282) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (28-JAN-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3282) AUTHORS Haridas,S., Mesny,F., Miyauchi,S., Thiergart,T., Pickel,B., Atanasova,L., Karlsson,M., Huttel,B., Barry,K.W., Chen,C., Bauer,D., Andreopoulos,W., Pangilinan,J., LaButti,K., Riley,R., Lipzen,A., Henrissat,B., Kohler,A., Grigoriev,I.V., Martin,F.M. and Hacquard,S. CONSRTM DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (05-APR-2021) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_025764819). ##Metadata-START## Organism Display Name :: Fusarium solani FSSC 5 MPI-SDFR-AT-0091 ##Metadata-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..3282 /organism="Fusarium solani" /mol_type="mRNA" /strain="FSSC 5 MPI-SDFR-AT-0091" /db_xref="taxon:169388" /chromosome="Unknown" gene <1..>3282 /locus_tag="B0J15DRAFT_387969" /db_xref="GeneID:70301687" CDS 1..3282 /locus_tag="B0J15DRAFT_387969" /codon_start=1 /product="NRDE-2, necessary for RNA interference-domain-containing protein" /protein_id="XP_046137466.1" /db_xref="GeneID:70301687" /db_xref="InterPro:IPR013633" /db_xref="JGIDB:Fusso1_387969" /translation="
MSDEDESPKLTVPKFASFKPKPETSELKVPKFSSFKSKEKESSASTGSRSREREHDRDSRRKRHHRSDSHRDHHHSKRHRSEHREREKSRRSSRSGTPEHQRRVDPPRDNKEASRLYVIDTKGDPLIIRYGHLDRAQVPAYYRDGYGKVLGTTGRLVIHRDGPRDQFSLRMPGEGSYAFKEKDGLRSKAWRVRTKPLRIRKQENDSSEDADDDFLPLSTSKKRKRGQQDTESSDEEEKPSYRSIEGKAKPRQFVDSDLESDSDSDAEQVDLDQNNPLKWKSIQLSRRVKDQPDDIDAWLELSNHQDALLRAGEDIDHRALEAEVHSFAEIKLHMLESALANVSTPQDRTRVLVPLMREGVKVWNSKTAAKKWADLEKDEESSFTLWKAHLDFALSNISTFHYDSIKQMHLGRLGQIFARSRSNLGMEDFSEAIYVFLRLTRFIHDSGYKELAVAAWQAFLELNFFRPPHLDDQTAAFESLRDFWENEVPRIGEADAQGWAKFVKDGGIGDAPEPLGANKDVVSQSRDDYRRWAIIEHSQAEKARMPARTMDEGTEDDPFRVVMFSDIEPFLFIVPRAIMQAVQEQLVDAFLIFSGFPPTFRSNTWTEEAFHDQFLVSSSATEEPRSLEVPSGDEDPVEIQRKPPAFTHQPLCISQSPDVLFPGGEWFSYLPERNGSNEVELSLVVNATKQLVHTANFETLAGFHLALCAAWDETGVKKPAKALLKRYPTNLDLYGAYALAESASGSHDVAVKVFSSATALASKASTPSAFGLWRRWSWMELELGNKKVATQRLCASVNDNLRSLDQAPDVSSTHILKAHQAFSSRMNDFLSAGELDHAETLIECLALLSYLTAEGCSEPTSDSQGNISAAIEVIHKQSLEFKRRGYQASPAHERALQFAARLLYLHATRGPFRRAYLLDQLKQFLSYFLRNSIFLAFFEWADSSLRIIDETRTLLYETVLTPAQDCLGSRLFAIHHEMERGNVNTTKAAFEHAVSSDVCKSNTGLWIKFIQFCSLQRELRAKAKDVLFRALRQCPWSKDVMMEAFLTLNRDMESSELKGVFETMASKGLRVHVDLDEFLEKRRTERRAQKGRG"
misc_feature 847..1785 /locus_tag="B0J15DRAFT_387969" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
atgtccgacgaggatgaatcccccaagctcacggtcccaaagtttgcatcattcaagccgaaaccagagacctcggagctgaaagtacccaaattttcatctttcaagtccaaagagaaggaatcgagtgcaagcacaggttcaagatcgcgagagagggaacatgatcgagactcgagaaggaaaagacaccatcgctctgacagtcatcgcgatcatcaccactcaaaaaggcaccgctcagagcacagagaaagggagaaatctcgacgctccagccgttcggggactccagagcatcaacgacgcgtcgatcctcctcgcgacaacaaggaggcttcacgattgtatgtcatcgacacaaagggcgatcccttgattattcgctatggccatcttgatcgagctcaggttcctgcctactatcgtgacggatatggtaaggttcttggtaccactggccggcttgtgatacaccgcgatggccctagggatcagttcagtcttcgcatgccgggtgaaggctcctatgcttttaaggaaaaggatgggcttcgctcaaaggcatggcgagtgagaacaaaaccgcttcgaattcgaaagcaggagaatgattcttctgaagatgctgacgacgactttttgccattgagcacatccaaaaagcgcaagcgtggccagcaggacacggaatcatccgatgaggaggaaaagccatcatatcgctcgattgagggcaaagcaaagcctcgccagttcgttgacagcgatctggagtctgactcggactcggatgccgagcaggtcgacttggaccaaaacaaccccctgaaatggaagtcgatacaactttccagacgcgtcaaggatcagccagatgatattgatgcctggcttgagctgtcaaatcatcaggacgcccttctgagagccggcgaggacattgaccacagagcacttgaggctgaggtgcactcttttgctgagatcaaactacacatgcttgagtctgcattggcaaacgtttcaactcctcaagatcgaactcgcgtgctggttcctctaatgcgcgagggagtcaaggtgtggaatagcaagacagctgccaagaagtgggcggacttggaaaaggacgaggaaagtagttttacgctgtggaaagcacacctcgactttgccctgtccaacatttccacctttcactatgactcgatcaagcagatgcatcttggtcgacttggtcaaatctttgcacgatctagatcaaatctcggtatggaagactttagtgaggccatctacgtctttctaaggcttacaagattcattcacgactctggatacaaggaacttgcggttgcagcttggcaggctttccttgaactcaacttttttcggcctccacatctggatgaccagactgcagcattcgaatcactccgggatttctgggagaacgaagttccccgaataggcgaagcagatgcccaaggctgggcaaagtttgtcaaagatggtggtataggagatgcccctgagccactcggggccaacaaggatgttgtgagccaatctcgagatgactacaggcgctgggcgatcattgagcactctcaggcagagaaggctcgaatgccggcgagaacaatggacgaggggacagaagatgacccgtttcgagtggtcatgttctctgatattgagccgtttctctttattgtgccgagagctatcatgcaagctgtgcaggagcaacttgtggatgcttttctcatcttttctggattcccacccacctttcgatccaatacctggacggaagaggcattccatgaccagttcctggttagctcgagtgcaactgaagaaccacggagtctggaggttccctctggcgatgaagaccctgttgagatacaacgaaagccgccagcttttacgcatcagcctctttgcatctctcaatccccagacgtattgtttccgggcggggagtggttctcttatctcccagagaggaacgggagtaacgaggttgagctgagcctcgtggttaatgccaccaaacagctggtccatactgccaactttgagacactcgcaggatttcacctggcgttgtgtgcggcatgggatgaaactggtgtcaagaagcctgccaaggctctacttaaacgataccctaccaacctcgacttgtacggcgcatatgcgctggccgagtccgccagtggaagccatgatgttgctgtcaaagtcttttcctcagcaacagcgcttgcatctaaggcgtcgacaccaagtgcctttgggctttggaggagatggtcctggatggaactggagcttgggaacaagaaagtggcaactcaaaggctatgcgcttccgtgaatgacaacttgcgttctttggatcaagctcctgacgtatcctcgacgcatatcctcaaagctcaccaagccttttcttctagaatgaacgactttctctccgctggcgaactggatcatgcagaaactcttatcgagtgcctggctttgctgtcttatttgactgctgagggctgttctgaaccaacatcagactctcaaggaaacatatcagccgcgattgaagttattcacaaacaatctcttgaattcaagaggcgaggatatcaagcgtcacccgctcacgagcgggctctacaatttgcggcgagattattatacttgcacgcaacacgagggcccttccgacgcgcatacctacttgaccagctgaagcaattcctcagctactttctccgaaacagcattttcttggctttcttcgaatgggctgactctagccttcgcataatcgacgagacgagaacactcctatatgagacagtactcaccccagctcaggactgcctgggcagccgactctttgccatccatcacgagatggagcgtggcaacgtcaacaccacaaaggcagcattcgagcacgccgtgtcgagcgacgtgtgcaaatccaacactggcctgtggatcaagtttatccagttctgcagcttgcagagggagctacgggccaaggccaaggatgtactgttccgggcactgaggcaatgcccatggtcaaaggatgtcatgatggaggcgttcctgacgctgaaccgggacatggagtcctcggagctcaagggggtgtttgagacgatggcgtccaaggggctgagggttcatgttgacttggacgagtttctcgagaaaaggaggactgagaggcgagcccagaagggtcgaggatga
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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