2024-04-26 08:30:26, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_046242598 3585 bp mRNA linear PLN 14-MAR-2022 DEFINITION Ilyonectria robusta NRDE-2, necessary for RNA interference-domain-containing protein (BGZ61DRAFT_378859), mRNA. ACCESSION XM_046242598 VERSION XM_046242598.1 DBLINK BioProject: PRJNA801215 BioSample: SAMN05720459 KEYWORDS RefSeq. SOURCE Ilyonectria robusta ORGANISM Ilyonectria robusta Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreomycetidae; Hypocreales; Nectriaceae; Ilyonectria. REFERENCE 1 (bases 1 to 3585) AUTHORS Ke,Y.-H., Bonito,G., Liao,H.-L., Looney,B., Rojas-Flechas,A., Nash,J., Hameed,K., Schadt,C., Martin,F., Crous,P.W., Miettinen,O., Magnuson,J.K., Labbe,J., Jacobson,D., Doktycz,M.J., Veneault-Fourrey,C., Kuo,A., Mondo,S., Calhoun,S., Riley,R., Ohm,R., LaButti,K., Andreopoulos,B., Pangilinan,J., Nolan,M., Tritt,A., Clum,A., Lipzen,A., Daum,C., Barry,K., Grigoriev,I.V. and Vilgalys,R. CONSRTM DOE Joint Genome Institute TITLE Convergent genome expansion in fungi linked to evolution of root-endophyte symbiosis JOURNAL Unpublished REFERENCE 2 (bases 1 to 3585) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (14-MAR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3585) AUTHORS Kuo,A., Ke,Y.-H., Bonito,G., Liao,H.-L., Looney,B., Rojas-Flechas,A., Nash,J., Hameed,K., Schadt,C., Martin,F., Crous,P.W., Miettinen,O., Magnuson,J.K., Labbe,J., Jacobson,D., Doktycz,M.J., Veneault-Fourrey,C., Mondo,S., Calhoun,S., Riley,R., Ohm,R., LaButti,K., Andreopoulos,B., Pangilinan,J., Nolan,M., Tritt,A., Clum,A., Lipzen,A., Daum,C., Barry,K., Grigoriev,I.V. and Vilgalys,R. CONSRTM DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (21-DEC-2021) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_025764435). ##Metadata-START## Organism Display Name :: Ilyonectria robusta PMI_751 v1.0 ##Metadata-END## FEATURES Location/Qualifiers source 1..3585 /organism="Ilyonectria robusta" /mol_type="mRNA" /strain="PMI_751" /db_xref="taxon:1079257" /chromosome="Unknown" gene 1..3585 /locus_tag="BGZ61DRAFT_378859" /db_xref="GeneID:70273281" CDS 209..3514 /locus_tag="BGZ61DRAFT_378859" /codon_start=1 /product="NRDE-2, necessary for RNA interference-domain-containing protein" /protein_id="XP_046112824.1" /db_xref="GeneID:70273281" /db_xref="InterPro:IPR013633" /db_xref="JGIDB:Ilyrob1_378859" /translation="
MSAKDEGNRLTVPKFASFKTKEAPGELKAPRFSSFKPKDPEKPTESASAADDGNDRDARRKRARLSENWHSDSQRHRHHSRSHRHDSHHRPKEHSKPSSRSETPVRQGPNVKPTREEDTTSKLYFIDTKGDPLIVKYGGIDKSHIPSYYRYGYGRVLGTTGRLVIHREGARDQFSLRMPGEGTSAFKDRDGLRSKTWRVTSNPRRIRRQEVEAKSDDDEDFLPLRTSKKRKHGPADPESSEDDQQPTYRSIEGKAKPRQFSDSDLDSDSESAAEMFNADQSNPLKWKSIQLSRQVKDHPEDIDAWLELANHQDALLRAGEDIDHKALEGEVHSYAEIKLSMLESALSNVSDPQDRLRVLVPLMHEGIKVWTSKAASKKWTELLKDEDKSFTLWKTHLNFAMSNITTFHYDDIKRMHLDRLHQTIRRPESDGMEEKFSELVYIFLRATRFIHDSGYKELAVAAWQAVLELNIFRPAEVEGYDQALAEFRDFWESEVPRIGEVDAQGWARFVEAGGIGDPPEPLEDGGDLRSQSRDDYKVWASIEHNRAEKAKIPARTMDEGTEDDPFRVVMFSDIEQLLFVIPRSVLAELVPQLLDAFLVFMRLPPAFKSGEWAEGAYHDQFLAGPAPGSELLTVEKPTGIDGLSEEIKRKPPSFDQEGLHAASSLDVLFAGTNWFTYMSQSIKNSEPELGLVINATRQLVHAARIEGLGEYYLGLCSIKDCAGVKKQAKALLKQYPTNLSLYGAYALAEFSNNNHGVATKVLASATELASKLPSSSAFLLWRIWSWMELELGHKNVAIRRLCSSVDEVLRSKPEDVEVSQTMVLKAQQTFSSNLAHSLITGNLDDASIYAECLALLAYLRADGCTEPSSAAQGNISAAMETIHSQSAEFKSRGYESSKAHEKNLQFAARILYLNATRGPFRRAYMLEQLGKFIAFFPRNTIFLSLFEWADASLRVVDEVRTLLHETVLVPGQDCVSSRLFAIQHEIQRGNVNTTKAAFEHAVTSDVCKSSVPVWVLFIKFCGLQRELRAKAKDILFRALRHCPWSKDVMMEAFYTLSRDMESTELRGVFDTMTTKGLRVHVDMEEFLDKRRKERRGKKDLA"
ORIGIN
ctacaacaaatcatagcgaccacggctctcacccaaccacgcagcttcaaacccaaggcgaagcttccatctgttcgcttattcggacgagactggccatgtcacacaactgaacctgatcgtgaggcgacaaaagtccccagcgtgtcgcgtgaaaccgtcatgaggaaatccctgcgtcctcaataagcgtcgtatcactgccgtcatgtccgccaaagatgagggtaaccggttgacggttcccaaattcgcgtctttcaagaccaaggaggcccctggggagctaaaggcgccgaggttctcctcctttaagccaaaggaccccgagaaacccaccgagagcgccagtgctgcagacgacgggaatgatcgagacgcgagacggaaaagggcacgtctgtctgaaaactggcactccgatagccaacgccaccgccatcactccagaagccatcgccacgactctcatcatcggccaaaagaacactccaaaccctccagtcgatcagagacgccagttcggcagggaccaaatgtcaaacctacacgggaggaagacaccacctccaagctctatttcattgacaccaagggcgatcccttaatagtcaaatacggtggtatcgacaagtctcatataccctcttattaccgctatggatacggcagagtccttgggactacaggccgccttgtgatacatcgcgagggggccagagaccaattcagtctccgcatgcctggcgaggggacgtcggctttcaaggatagagatggcctccgctccaagacttggagagtcacctcgaatcccagaaggatccggaggcaagaggtagaggcgaagtccgatgacgacgaggacttcctgcccttaaggacatccaagaaacggaagcatggtccagccgaccctgaatcctcagaagatgaccaacaacccacttaccggtcaattgaaggcaaggcaaagccacgtcagttctcggatagcgacctggactccgactccgaatcggctgccgaaatgttcaacgcggaccagagcaacccactcaagtggaagtcgatccagctttcacgtcaagtcaaggaccacccagaagatatcgatgcttggttagagcttgcaaatcatcaagatgccctcttgagagcaggtgaagacatcgatcacaaggccttggaaggcgaggtgcatagttatgctgagatcaagctttctatgctcgagtctgctttgtcgaacgtgtcggatccccaagaccggctgcgcgtactggtgcctctgatgcacgagggaatcaaggtgtggactagcaaggctgcctcaaaaaagtggacagagctgcttaaagacgaggataagagctttacactctggaagacacaccttaactttgccatgtccaatattacgacctttcactatgatgacatcaagaggatgcaccttgaccggcttcatcaaactatccgacggcccgaatcggacggtatggaggagaagtttagtgaactcgtctacattttcctgagagctactaggttcattcatgattcgggatacaaggagcttgccgtagctgcatggcaagctgttttggaactcaacattttccggcccgctgaggtggaagggtatgaccaggccctggctgagttccgcgacttctgggagagcgaggtcccaaggatcggagaggttgatgctcagggctgggctaggttcgtggaagctggtggcataggtgatccgccagagccgcttgaggatggaggtgatctcagaagccaatctagagacgactacaaagtctgggcgagcatcgagcataaccgagctgagaaagccaagatcccggcaaggaccatggatgagggcactgaagatgacccgttcagagtagtgatgttctctgatattgagcaactactcttcgttatcccccgtagtgttctggcagagttggtaccgcaacttctcgatgcattcttggtgttcatgcggttaccaccagcctttaagtctggtgagtgggcagaaggcgcatatcacgaccagttcttggcggggccagcccctggaagtgagttgctgacagtcgagaaacctactgggattgacggcctctctgaggaaatcaaacggaagccaccttcattcgaccaagaggggctccacgctgcgtcttcgctggatgtgttgtttgccggaactaattggttcacttatatgtctcagagcatcaaaaatagcgagcctgaattgggacttgtgattaatgccacgaggcaacttgttcatgcagccaggattgagggtctaggcgagtattatctggggctgtgctcaattaaggactgcgccggcgtcaagaaacaagccaaggcgctcctcaagcaatatcccactaaccttagcctgtatggtgcttacgccctggccgagttttcgaacaacaaccatggggttgctaccaaagttcttgcttctgctactgagcttgcatcgaagttaccaagttcgagtgcgttcttgctctggcgaatttggtcctggatggaacttgagcttgggcacaaaaacgtagccatcaggagactatgttcgtcagtggacgaagtgttgaggtccaagccagaggatgtcgaagtttcacaaacaatggtgctcaaggcgcagcaaaccttctcttccaacttggctcactcgcttatcactggaaacctcgatgacgcctctatctatgccgagtgccttgctctattggcctacctaagagcggacggttgcacggaaccttcctcggccgcgcaaggtaatatttcagctgcgatggagaccatccattctcaatctgcggaattcaagtcgcgaggatatgaatcatctaaagcccatgaaaaaaacctgcagtttgccgcaaggattttgtatctcaacgccactcgagggccttttcggagagcgtacatgcttgagcagctgggcaagttcatagcgttctttcctcgtaacaccatcttcctgtctcttttcgagtgggctgatgctagtcttcgtgtggttgacgaggtacggacactgcttcatgaaacggtcctcgtgccggggcaagactgtgtgagcagcagattgtttgccatacagcacgagatacaacgaggaaatgtgaacacgacaaaggcggcgtttgagcatgcagttacaagcgacgtgtgcaaatccagcgtaccggtgtgggttttattcatcaagttttgtggtttgcagagggagctccgggccaaagcaaaggacatcttgttccgagcactaagacactgtccgtggtcgaaggacgtcatgatggaggcgttttacacgctgagccgggacatggagtccacagagctcaggggtgtgtttgataccatgacgaccaagggtctcagggttcatgtggatatggaagagtttctagacaagagacggaaggagaggcgagggaagaaggatctggcatgatggaaatccatgttagagtacatgttccattctttgataaaattttaataacaagccagttctatcggtaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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