2024-04-26 14:39:49, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_046198694 3321 bp mRNA linear PLN 28-JAN-2022 DEFINITION Fusarium redolens NRDE-2, necessary for RNA interference-domain-containing protein (BKA55DRAFT_684786), partial mRNA. ACCESSION XM_046198694 VERSION XM_046198694.1 DBLINK BioProject: PRJNA801210 BioSample: SAMN05878234 KEYWORDS RefSeq. SOURCE Fusarium redolens ORGANISM Fusarium redolens Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreomycetidae; Hypocreales; Nectriaceae; Fusarium; Fusarium redolens species complex. REFERENCE 1 (bases 1 to 3321) AUTHORS Mesny,F., Miyauchi,S., Thiergart,T., Pickel,B., Atanasova,L., Karlsson,M., Huettel,B., Barry,K.W., Haridas,S., Chen,C., Bauer,D., Andreopoulos,W., Pangilinan,J., LaButti,K., Riley,R., Lipzen,A., Clum,A., Drula,E., Henrissat,B., Kohler,A., Grigoriev,I.V., Martin,F.M. and Hacquard,S. TITLE Genetic determinants of endophytism in the Arabidopsis root mycobiome JOURNAL Nat Commun (2021) In press REFERENCE 2 (bases 1 to 3321) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (28-JAN-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3321) AUTHORS Haridas,S., Mesny,F., Miyauchi,S., Thiergart,T., Pickel,B., Atanasova,L., Karlsson,M., Huttel,B., Barry,K.W., Chen,C., Bauer,D., Andreopoulos,W., Pangilinan,J., LaButti,K., Riley,R., Lipzen,A., Henrissat,B., Kohler,A., Grigoriev,I.V., Martin,F.M. and Hacquard,S. CONSRTM DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (05-APR-2021) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_025763665). ##Metadata-START## Organism Display Name :: Fusarium redolens MPI-CAGE-AT-0023 ##Metadata-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..3321 /organism="Fusarium redolens" /mol_type="mRNA" /strain="MPI-CAGE-AT-0023" /db_xref="taxon:48865" /chromosome="Unknown" gene <1..>3321 /locus_tag="BKA55DRAFT_684786" /db_xref="GeneID:70228648" CDS 1..3321 /locus_tag="BKA55DRAFT_684786" /codon_start=1 /product="NRDE-2, necessary for RNA interference-domain-containing protein" /protein_id="XP_046055336.1" /db_xref="GeneID:70228648" /db_xref="InterPro:IPR013633" /db_xref="JGIDB:Fusre1_684786" /translation="
MSSKDEDTKPTVPKFASFKPKSETSDLKAPKFSSFKPKDKEKDKKLPTSFNAKDEGRERERERDSRRKRSHHHSDSHRDHHRSKRHRTNSRDRHREKPRTGHSEALEHRPLTKVTRNSDDASRLYIIDTKGDPLIIRYGSLDRSQVPGYYRDGYGKVLGTRGRLVIHRDGPRDQFSLRMPGEGSYALKDKDGLRSKNWRVRHTPLRVRKQEINGEDEEDGDFLALSSSKKRKHSHQASDSSDDEEQPTYRSIEGKAKPRQYDDSDVESESDVAADDINLDQNNPLKWKSIQLSRRVKDQPDDIDAWLELSNHQDALLRAGEDVDHKALEAEVHSFAEIKLHMLESALSNVSNHQDRIRVLIPLMKEGIKVWNSKVAAKKWLDLREDEDKNFALWKTHLDFSMFNISAFHFDTLKQMHLDRIRHVMSRSHVNIEPEDLKEAIYVFLRLTRFIHDSGYKELAVAAWQAFLELNFFRPTQLDDQSAAFESLRDFWESEVPRIGEADAQGWAKFVADGGIGDAPEPLQDIKEPRYQSRDDYKRWASLESSQADKARVPARTMDEGTEDDPFRVVMFSDIEPLLFFVPKSILPAVQEQLLDAFLIFQGLPPTFWSDHWTEEAYHDQFLAFSTLHTESSAPTPLSGDEDPTEIQRKPPSFRQNPLCVSETLDVLFPQSEWFSYLPSRNRKNDVELGFMVNATKQLVHNANFGGLATYHLALSQVQDGSSVKKAARALLKRYPTDLSLYRAYAIAEYANENHEVASKVVSSATELASESPTADAFALWRAWSWMELQGGDKQLAVRRLCSYVDDALRRSAGTPEVSSTHILKAHQTFSSLMSDFISGAKLEGASTLAECLVLLSYLTSESCAEPMSASQGSISAAIETVHRVSLEFKSRGYQASRAHERLLQFASRLLYLHATRGPFRRAYLLGQLKQFLKYFPRNTIFLSLFEWADSSLRLIDESRTLLHETVLTPAQDCLSSRIFAVHHEIERGNVNTTKAAFEHAVSSDTCKFNTSLWINFIRFCSSQRELRPKAKDILFRALRHCPWSKGVMMEAFFILNRDMDSSELKGIFETMTSKGLRIHVDLEEFLDKKKNERRGEKSKRFTNDR"
misc_feature 871..1809 /locus_tag="BKA55DRAFT_684786" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
atgtccagcaaggatgaggacaccaagcctacggtacctaaattcgcatctttcaagccaaaatccgagacttccgatttgaaggcacccaaattttcttctttcaaaccaaaagacaaggaaaaggataagaaattgcccacaagctttaacgccaaggacgaggggcgagagcgagaacgcgagcgtgattcaaggaggaaacgaagtcatcaccactctgattcacatcgcgaccatcaccgatcaaaaagacatcgcacaaactctcgtgaccgacatcgtgagaaaccacgaactggtcactctgaagcacttgagcaccgccccctcaccaaagttacacgtaacagtgacgatgcgtcgcgtctgtacatcattgacactaaaggggatcccttaatcattcgatatggaagtcttgaccgttctcaggttcccggttactatcgtgatggatatggaaaggttcttggcacacgaggtcgtcttgtaattcatcgcgatggaccaagagaccagttcagtctacgtatgcctggtgaaggctcatatgccttgaaagacaaggatggtctgcgctctaagaattggcgtgtgagacatacaccgttgagagtccggaagcaagaaattaacggtgaagatgaagaagacggagacttcctggcactaagctcatcgaagaagcgcaaacactcgcatcaagcttctgattcttcagacgatgaggaacagccgacttatcgatcgatagagggaaaagctaaacctcgtcaatacgatgacagcgacgtggaatctgaatcagatgtggctgcagatgatattaatctcgatcagaataatcccctgaagtggaagtcaattcagctctcgagacgtgtgaaagaccagccagatgatatagacgcatggctcgagttgtcaaaccaccaagatgctctcttgagagcaggcgaggatgttgatcacaaggcacttgaggcggaggtgcacagttttgcggagatcaagctgcacatgcttgaatcagctctgtctaatgtatcaaatcaccaagatcgcatacgggtgctaatccctctcatgaaggaaggtataaaagtgtggaatagcaaagtcgccgccaagaagtggcttgacttacgtgaggacgaggataagaattttgctctgtggaagacgcaccttgatttttctatgtttaacatttctgctttccattttgacaccctcaagcaaatgcacctggataggatacgacatgttatgtctcgatcacatgtgaacattgagcccgaagacttgaaggaagctatctatgtctttctgagacttaccagattcattcatgactctggttataaggagcttgcagtcgcagcatggcaggcttttctggagctcaacttcttccggcccacgcaactggatgaccagagtgcagccttcgaatcacttcgtgacttctgggagagcgaagtcccgaggataggagaagcagacgctcagggctgggcgaagtttgtagcagatggaggaataggcgatgctcccgaaccgctacaagatatcaaagagcccagataccagtcccgagatgattacaaacgatgggcaagcctagagagctctcaagctgataaggctcgagttccagctagaaccatggatgaagggacagaagacgacccattcagagtggtgatgttctctgacatcgagccgctgctctttttcgtcccaaagagtatcctgcctgctgtgcaggagcaattgctagacgcatttctgatattccagggactccccccaacattttggtctgaccactggaccgaggaggcgtatcatgatcagttccttgcattttctacattacacacggagtcgagtgctcccacgccactatcgggagacgaggatccgactgagatccagaggaagcccccttctttccgccagaaccctctttgcgtctcggaaacgctcgatgtcctttttcctcagtcagaatggttttcctacctgccctcaaggaatagaaagaatgacgttgaacttggatttatggtcaacgcaacgaagcaactggttcacaatgccaactttggaggtttggccacatatcatttagcattgtctcaagttcaagatggctccagtgttaagaaagcggcaagggctttactgaagcgatatccgactgaccttagtctttaccgagcatacgctattgctgagtatgcaaatgaaaatcacgaagttgcttctaaggtcgtgtcatcagcgactgagctcgcgtcggagtcaccaacagcagatgcgtttgctctttggagagcttggtcgtggatggaactccaggggggtgataaacagctagcagttcgaagattatgctcttatgtagatgatgctcttcgaaggtcagctggaacccctgaagtatcatcaacacatattctcaaagcccaccaaaccttttcgtctcttatgagtgactttatttccggggcaaaactcgagggtgcgagtactcttgccgagtgcttagtcctgttgtcatacttaacttctgagagctgtgcagaaccgatgtcggcatcacaaggaagtatttcggctgcgatagagacagtgcaccgagtgtctctcgagttcaagtctcgaggctaccaagcatcgcgcgctcatgagcgactattacagtttgcgtcaaggctattgtacttgcacgcaacccgaggacctttccgtcgcgcgtatctgcttggacaactgaagcagttcctgaaatacttcccgaggaacaccatattcttatcactttttgaatgggccgactcaagtcttcgcctcatcgacgaatcaagaacacttctacacgaaacagtcctgactccagctcaggattgcctgagcagtcgaatatttgccgtccatcacgaaattgaacggggaaacgtcaacacaacgaaagcagcctttgagcacgccgtatcaagcgacacttgcaagttcaacacatctttgtggataaattttatcagattctgtagctcacaaagagagttgcgaccaaaggctaaggatatcttgttcagggccttgaggcattgcccctggtccaagggtgtcatgatggaggcttttttcatattgaatagggatatggattcttcggaactgaagggtatatttgagacaatgacttcgaaagggttgagaattcatgttgatctggaggagttcttggataagaagaaaaacgagaggcgaggagagaagagcaagcggttcacaaatgataggtaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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