2024-04-26 07:34:10, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_046164784 3407 bp mRNA linear PLN 28-JAN-2022 DEFINITION Alternaria rosae NRDE-2, necessary for RNA interference-domain-containing protein (BKA58DRAFT_151049), mRNA. ACCESSION XM_046164784 VERSION XM_046164784.1 DBLINK BioProject: PRJNA801206 BioSample: SAMN05878025 KEYWORDS RefSeq. SOURCE Alternaria rosae ORGANISM Alternaria rosae Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Dothideomycetes; Pleosporomycetidae; Pleosporales; Pleosporineae; Pleosporaceae; Alternaria; Alternaria sect. Pseudoalternaria. REFERENCE 1 (bases 1 to 3407) AUTHORS Mesny,F., Miyauchi,S., Thiergart,T., Pickel,B., Atanasova,L., Karlsson,M., Huettel,B., Barry,K.W., Haridas,S., Chen,C., Bauer,D., Andreopoulos,W., Pangilinan,J., LaButti,K., Riley,R., Lipzen,A., Clum,A., Drula,E., Henrissat,B., Kohler,A., Grigoriev,I.V., Martin,F.M. and Hacquard,S. TITLE Genetic determinants of endophytism in the Arabidopsis root mycobiome JOURNAL Nat Commun (2021) In press REFERENCE 2 (bases 1 to 3407) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (28-JAN-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3407) AUTHORS Haridas,S., Mesny,F., Miyauchi,S., Thiergart,T., Pickel,B., Atanasova,L., Karlsson,M., Huttel,B., Barry,K.W., Chen,C., Bauer,D., Andreopoulos,W., Pangilinan,J., LaButti,K., Riley,R., Lipzen,A., Henrissat,B., Kohler,A., Grigoriev,I.V., Martin,F.M. and Hacquard,S. CONSRTM DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (30-MAR-2021) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_025763573). ##Metadata-START## Organism Display Name :: Alternaria rosae MPI-PUGE-AT-0040 GOLD Stamp ID :: Gp0141910 ##Metadata-END## FEATURES Location/Qualifiers source 1..3407 /organism="Alternaria rosae" /mol_type="mRNA" /strain="MPI-PUGE-AT-0040" /db_xref="taxon:1187941" /chromosome="Unknown" /country="Germany:Pulheim" gene 1..3407 /locus_tag="BKA58DRAFT_151049" /db_xref="GeneID:70194530" CDS 209..3262 /locus_tag="BKA58DRAFT_151049" /codon_start=1 /product="NRDE-2, necessary for RNA interference-domain-containing protein" /protein_id="XP_046026292.1" /db_xref="GeneID:70194530" /db_xref="InterPro:IPR013633" /db_xref="JGIDB:Altro1_151049" /translation="
MTSNIPKFASFRPKPKAAPEPPKEPQHHEKAERSPKEKRSTKGRSPSPNRHVRGHESSKDRPYFSDRRGDPEVLRYGTMHRYDIPPYRRFGHGFILGLSVNQKIDREYSTDRKILVTPATRRRQERLLTSKRANKSSERALRLLKAEVPDVDHSQDFLSLSANAKRKRDDSEDEDAEMEPRTDYRGIEGPKSTEPVDPDTQYESDPDVTIDTEVTCKNSQLARQTKQHPGDLQSWLDLIKHQEAMLKLERPSAELTASDRAHLADIRISTYEEALKKIGGDQDSKLKLYKGLLEEAGRAWDGARLTSKWNDVLAKHPQSVELWMKYLDFVQSRFTSFKFEECRATFFKCIESLRTTKSEVSVEQTLHILLRLTSMTHDAGYQELALAVWQAVLEHHLLQPEVDTDLQAFKQFWESEVSRIGEPGAKGWKHSNTDDAPPPGPPSPHEKEASDAVFEDFRRREVEATSVLRLPGRTSDDVAEDDAFHTIFFSDVEPYLAIISPDTPAILIIEAFLCFCGLPTLPHRTPQQRTWWSDLFLQRYWHSTSPDTDDSTQLTKTIKRFSNYSAKHSQMTTELLFEQSFSLDGIRLDADFIRRLLKLLASDISSDDIIGEYLLAFESKHFPVEVFKSAKRLLKARPSSLRLYNAYGIVESRLGNSVKADQVFGMALSMQKGDSVLSLPWSLELFSNWVWEALRRGEHSEALWRLVSPKGSLPAGAAKDSHPDNTLLETAHLTLSQKSEHALLHHDYTTAITSTSLLALLTYLTHNNSASQALELHANLTSWFTSHHLSTSAVAELHVQSIANLLTHHTAHAPIVKPSLTRSTLEPLISRFPTNTILLALYAANEARFSVDDRVRGIMHQNALQNPEERSIPGWAFAIHYETLKGEIAGSTTHSIRALYKRATESTTGSRCPALWKAYVEFEMRCLREESARQRANKRPRRDGKKSRWEVRVEEAEQRVRDTFYAGLRNLPWCKEYIMLAFTEARDVFGEEDKGRLYRVMMEKELRLYVELDAEDV"
misc_feature 392..>547 /locus_tag="BKA58DRAFT_151049" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature 866..1759 /locus_tag="BKA58DRAFT_151049" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
atcctcgttgtgttcgcagtaaaagacatacgcctgccagtcctgtttctatagggaacatgtctgactcctcaattcgcaatcagtctcttgacttgtgactacacgcgtcgcatatattcctgtactgaaagcaccaaccacaactatgatatttgtctgaagcttgatctacaagtagaaaattgctggagtcgcgccttacgcaatgacgtcgaacatccccaaatttgcgagcttccggccaaagcccaaggccgccccagagccacccaaggaaccccaacaccatgagaaagccgaacgatcgccaaaagaaaaacgttctaccaaggggaggtcaccatcgccaaatcgacatgttcgcgggcacgagtcaagcaaagacaggccctacttcagcgaccgacgcggagatcccgaagtactgcggtatggaacaatgcaccgttatgacatcccaccctaccgtcgcttcggtcatggcttcatactaggactttctgtaaaccaaaagatcgatagagagtactcaacggatcgaaaaatactagtgacgccagcgacacgaaggcggcaagagcgactgctgactagcaagcgtgcgaacaagtcgagtgagcgcgcgttgcggctgctgaaggccgaggtccccgatgtggatcactctcaggactttctgtcattgtctgcaaacgcaaagaggaagcgcgatgacagtgaagatgaagatgccgagatggagcctaggacagactaccgcggcatcgaagggccaaagtcaacagagcctgtggatccagacacgcaatatgagtcggacccggatgttacaatcgacactgaagtcacgtgcaagaactcgcagctcgcgcggcagacgaaacagcatcctggagatctccaaagctggctggacttgatcaaacaccaagaagccatgctaaagctcgaaaggccatctgctgagctgactgcatctgacagagcacatcttgctgatatacgtatctccacatatgaggaggctttgaaaaagatcggcggggatcaagacagcaagctgaaactgtacaaaggactgctggaagaagcaggaagggcctgggatggcgccagactgaccagcaaatggaatgacgtgcttgcgaagcatccgcagagcgtggagctatggatgaagtatcttgactttgtgcagtcacgcttcaccagtttcaagtttgaggagtgtcgggcgaccttcttcaaatgcatcgagtctcttcgtacaaccaaaagcgaagtgtctgtggaacaaaccttgcatatactactgcgtttgacatctatgacacacgatgcaggataccaggaactcgctctcgccgtgtggcaagctgtactcgaacatcatttgctacaaccagaagtagacacagaccttcaggctttcaagcagttctgggaaagcgaagtgtctcgcatcggtgagcctggggcaaagggatggaagcatagcaacacagatgatgcgccgcccccaggtcctccgtctccgcacgagaaagaagcatcagatgctgttttcgaagattttcgaaggcgcgaagtggaggctacgtcggtgttacgactccctggtcgcacgtcagacgatgtagcagaggatgatgcatttcacacaatcttcttctctgatgtcgagccatacctggctatcatctcgcctgacacaccagcaatactgatcattgaagctttcttgtgtttctgcggcctgccgactttaccacatcgcacaccacaacaacgtacctggtggtctgatctgttcttgcagcgctattggcactctacttctccggacaccgacgattctacgcaactcacaaaaaccatcaaacgcttctcgaactattcagcaaaacactcccagatgaccacggagctcctattcgagcaaagcttctcactagatggcatcagacttgacgcggacttcatcaggcgcttgctcaagctcctagcttcagacatttccagcgatgatattataggagagtatctgctagctttcgaatcgaaacacttcccagtggaagtgttcaagtccgcgaagcgattactcaaagcgcgtccgtcaagcttgcgcttgtataacgcctatggaatagtcgaatcgcgtctaggtaactctgtcaaagcagatcaagtgtttggaatggcgctgtctatgcagaaaggagacagtgtgctctcattaccttggagtttggaacttttcagtaactgggtatgggaagcactcagacggggagaacacagcgaagccttatggcggctcgtctcaccaaagggtagccttccagccggcgcagccaaagactcacaccccgacaacactcttcttgagacagcacatctaaccctcagccaaaaaagcgaacacgccctactccatcacgactacacgacagcaataacaagcacctccctcctcgccctcctaacctacctcacccacaacaactccgcatcacaagccctcgaactccacgccaatctcacctcatggttcacatcgcaccatctctccacctccgccgtcgcagaactccacgtccaatccatcgccaacctcctcacccaccacaccgcccacgcccccatcgtcaaaccctctctcacccgctccactcttgagccgctcatatcccgcttcccaactaacacgattctcctcgcgctctatgccgcaaacgaagcccgcttctctgtcgacgaccgcgtacgaggtatcatgcaccagaacgccttgcagaaccccgaagaaaggagtataccaggctgggcctttgccatacactacgaaaccctcaagggagaaattgcaggttcgaccacgcattccatccgtgcattgtacaagcgcgccacggagtccacgactggatctcggtgtccagcactgtggaaagcgtacgtggagtttgaaatgcggtgtctacgtgaggagtcggcgagacaacgagcgaataagagaccgcgtagggatggcaagaagagtagatgggaggtgcgggttgaggaggcggagcaacgggttagagacacgttttacgctggattgaggaatttgccgtggtgtaaggagtatattatgctcgcttttacggaagcaagagatgtgtttggtgaggaggataagggaaggttgtatagggtcatgatggagaaggagttgaggctttatgttgagttggatgccgaggatgtatagatgaagtgaagggtgcagtagattggatagtcagacgtgttagcgtaagcatgagcgaagaagctgataatggccatcttgtacggggaggcttttttgaacaaaatatataaccatgtacattaatcgcccgtatctatcctac
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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