2024-04-19 11:33:04, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_046160504 2982 bp mRNA linear PLN 28-JAN-2022 DEFINITION Microdochium trichocladiopsis putative RNA interference and gene silencing protein (B0I36DRAFT_376866), partial mRNA. ACCESSION XM_046160504 VERSION XM_046160504.1 DBLINK BioProject: PRJNA801207 BioSample: SAMN06297163 KEYWORDS RefSeq. SOURCE Microdochium trichocladiopsis ORGANISM Microdochium trichocladiopsis Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Xylariomycetidae; Xylariales; Microdochiaceae; Microdochium. REFERENCE 1 (bases 1 to 2982) AUTHORS Mesny,F., Miyauchi,S., Thiergart,T., Pickel,B., Atanasova,L., Karlsson,M., Huettel,B., Barry,K.W., Haridas,S., Chen,C., Bauer,D., Andreopoulos,W., Pangilinan,J., LaButti,K., Riley,R., Lipzen,A., Clum,A., Drula,E., Henrissat,B., Kohler,A., Grigoriev,I.V., Martin,F.M. and Hacquard,S. TITLE Genetic determinants of endophytism in the Arabidopsis root mycobiome JOURNAL Nat Commun (2021) In press REFERENCE 2 (bases 1 to 2982) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (28-JAN-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2982) AUTHORS Haridas,S., Mesny,F., Miyauchi,S., Thiergart,T., Pickel,B., Atanasova,L., Karlsson,M., Huttel,B., Barry,K.W., Chen,C., Bauer,D., Andreopoulos,W., Pangilinan,J., LaButti,K., Riley,R., Lipzen,A., Henrissat,B., Kohler,A., Grigoriev,I.V., Martin,F.M. and Hacquard,S. CONSRTM DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (06-APR-2021) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_025763552). ##Metadata-START## Organism Display Name :: Microdochium trichocladiopsis MPI-CAGE-CH-0230 ##Metadata-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..2982 /organism="Microdochium trichocladiopsis" /mol_type="mRNA" /strain="MPI-CAGE-CH-0230" /db_xref="taxon:1682393" /chromosome="Unknown" gene <1..>2982 /locus_tag="B0I36DRAFT_376866" /db_xref="GeneID:70190050" CDS 1..2982 /locus_tag="B0I36DRAFT_376866" /codon_start=1 /product="putative RNA interference and gene silencing protein" /protein_id="XP_046008805.1" /db_xref="GeneID:70190050" /db_xref="InterPro:IPR003100" /db_xref="InterPro:IPR003165" /db_xref="InterPro:IPR014811" /db_xref="JGIDB:Mictri1_376866" /translation="
MSAPGRGGSFRGGGGGRGPRRGGFGGDSSRGRSARGGFQGRGRGGVTVSVFSYTEDALLAATKGGLSLAGLKLREGFPCRPGFGTKGTPVTLWANYFEMCPPPKVMFYRYDIAVSPAVAGRKLSQVVRLLLESEELMEFRLDVATDFKSTLVSRQKLPADETVAKIQYRSEDEDEPRQNATQYEVRLLYTNTLSVSHLIEYLTSTNISARFNDAQSLVQAFNIFLNHHSKLTGNLATIGASKKFSLADNADKWDLGTGLTAIRGFFSSVRVATCRLLVNVNVSHGAFYEAGPLDKIMFMYYSAHQRSKYKLNNFLAKLKVGPTHLPERKNKKGEIVRKVKTIVGLANTNDGHGLQHPPRVKEFGAGPKDVEFWLEGGGGGQPASSPGAGSQEEGKKKKKKWKQAGPSDKPSSTSSSGGYISVYEFFWTKYNWQTNPMIPIINVGTRDTPSYLPPEVCVVVPGQNSNSKLNPAQTQQMIQFAVRSPWENAASIVRDGFQTVGLSSQANVLLDRFGVSVPPQLITVSGRVLNEPKVLYKEGKPAPVRSGSWNMVNVKLNTTGTMTNWSYLLISIPDRRDAFDQAGLIAMLVKFQEALRKTGMVVAPPALGRRLVLRDQDDPELDNSLHLLFIILPDTTPLYNRIKHCGDVKYGIQTICVVGHKIAKEKGQDQYFANVALKLNLKLRGNNQLLDKPRLGIINENKTMVVGIDVTHPSPGSSSRAPSIAGMVASVDRWLGQWPAVLRVQAGARQEMVTDLSDMLKSRLQLWKTKGHHQSLPENILVYRDGVSEGQYDKVIDEELPRLRKACTEVYPTSDQKKDLPHFTIVIVGKRHHTRFYPTKEANADRSGNPKPGTIVDRGVTEARNWDFFLQAHAAIQGTARPGHYVVVLDEIFRARYAKTLPPDCSNVADVLEDLTQSLCYVYGRTTKPVSLCTPAYYADIVCERARCYLSGVFDTPTQSAEPSLAGSQTEGLQVGNEDVRIHEKLKDTMFYI"
misc_feature 238..2976 /locus_tag="B0I36DRAFT_376866" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 1528..2850 /locus_tag="B0I36DRAFT_376866" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1915..1917,1927..1929,1963..1974,1981..1983, 2011..2013,2020..2022,2032..2034,2044..2046) /locus_tag="B0I36DRAFT_376866" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2125..2127,2131..2133,2353..2355,2818..2820) /locus_tag="B0I36DRAFT_376866" /note="active site" /db_xref="CDD:240015" ORIGIN
atgtccgctccaggtcgtggtggctcgtttcgtggtggcggcggaggacgtggccctagacggggaggttttgggggtgattctagtagaggccgcagtgcccgtggaggcttccaaggcagaggaaggggcggcgtgactgtttcggtgttctcgtacaccgaagatgcccttctggccgctaccaaaggtggcctcagtctcgccggcttaaagttacgagaggggtttccttgtcgtcccggcttcggcacgaaaggcacacccgtgacgctgtgggccaactatttcgaaatgtgtccacccccaaaagtcatgttctaccgatacgatattgctgtttcacccgcggtcgccggaagaaagcttagccaggtcgtcaggctgttactggagtccgaagaattgatggaatttcgactggatgtggccactgacttcaagtcaactcttgtgtcgcgtcagaagttgcccgcggatgagacggttgccaaaatccagtaccgctcggaagatgaggacgaacctcgacaaaatgccacccaatacgaagttcgtctcctatacacgaataccttgagtgtctcgcatctgatcgagtatctcacatctacgaacataagcgcgcggttcaacgacgctcagtctctggttcaggccttcaacatcttcctcaaccatcactcaaagctgacggggaatttggctacgattggggctagcaagaaattctctctagccgataacgcggataagtgggatcttggcacaggattgacggcaatacgaggcttcttttcgagcgtgagggtggcaacctgccgcctcctcgtcaatgtgaatgtcagccacggtgccttttatgaagcagggccgctggacaagatcatgttcatgtactactctgctcaccaaagaagcaagtacaaactgaacaacttcctcgcgaagctcaaggtggggcctactcacctgccagaaaggaagaacaaaaagggtgaaatcgtgcggaaagtcaagaccattgttggcctcgccaacacgaatgacggacacggcctccagcaccccccaagggtaaaagagttcggtgcgggtcctaaggatgtggagttctggctcgaaggcggtgggggaggccagccggccagctcaccaggagctggaagtcaggaggaaggtaaaaagaaaaagaagaaatggaaacaggcaggcccttccgacaagccatcgtcgacctcgtccagtggcggatacatcagtgtttacgaattcttttggaccaaatataattggcagaccaaccccatgatccccatcatcaacgtcggtacacgagataccccaagctatcttccacctgaggtctgtgtcgtcgttccaggtcagaactcaaactcaaagctcaaccccgcgcaaacccaacaaatgatacagtttgctgtacggagcccatgggagaatgctgcttcaatagtccgcgatggttttcaaacagttggtctttcatcacaggcgaacgtgcttctggatcggtttggcgtatcggtcccacctcagttgatcactgtgtcagggagggttctcaacgagcctaaggtcttgtacaaagaggggaagcctgccccggtgcgctctggcagctggaatatggttaacgtgaagttaaacaccaccgggactatgacgaattggtcgtacctactcatttcgatacctgatcggcgggatgcatttgatcaagcaggtctcatcgctatgctcgtcaagtttcaagaggctttgcgcaaaaccggaatggtcgtggcccccccggctctgggacgaagactagtcctgagagaccaggatgacccggagctcgacaactccttacacctgcttttcattatcctaccagataccacccccctctacaacaggatcaaacactgcggcgacgttaagtacgggatccaaactatctgcgttgttggccataagattgccaaagagaagggccaggaccagtacttcgccaatgtcgccctgaagctcaacctgaaactgcgcggaaacaaccagctactcgataaaccacgccttggtataatcaacgagaataagactatggttgtcggtattgacgtcacacacccgtctcctgggtctagttctcgcgcgccaagcatcgccgggatggttgccagcgttgataggtggcttggccagtggcctgcagttctccgggtccaggccggcgctcgccaggaaatggtcacggacctgtcagacatgcttaaatcacgcctccagctgtggaaaaccaaaggacaccaccagtccctgcccgagaatatcttggtataccgtgacggcgtctccgagggtcagtatgacaaagtcatcgatgaggaacttccgcggctgcgcaaggcatgtacggaggtgtatccgacctctgaccagaaaaaggacctcccacatttcaccatcgtcattgtcggtaagcgtcaccacacgcgattttacccgaccaaggaagccaacgccgaccggtccggcaacccgaagcccggcaccatcgtcgaccgcggtgtcacagaggcacgtaactgggacttcttcctccaagcgcacgcagccatccagggcaccgcgcgtccagggcactacgttgtcgtgctcgatgagatcttccgagctcgctatgccaagacgttgccgccggactgcagcaacgtggcggatgtgcttgaggacctaacgcagagcttgtgctatgtgtatgggcgtacgaccaagccagtcagtctgtgtacgccggcttactatgctgatattgtctgtgagagggctaggtgctatctgagtggtgtctttgacacgccgacacagtccgcggagccgtcactggccggaagtcagacggaggggttgcaagttgggaatgaagatgtgaggattcatgagaagttgaaggataccatgttttatatttaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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