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2024-03-29 18:38:39, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_046063802            2921 bp    mRNA    linear   VRT 05-MAR-2022
DEFINITION  PREDICTED: Micropterus dolomieu arrestin red cell-like
            (LOC123979770), mRNA.
ACCESSION   XM_046063802
VERSION     XM_046063802.1
DBLINK      BioProject: PRJNA800460
KEYWORDS    RefSeq.
SOURCE      Micropterus dolomieu (smallmouth bass)
  ORGANISM  Micropterus dolomieu
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Eupercaria; Centrarchiformes; Centrarchoidei;
            Centrarchidae; Micropterus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_060161) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Micropterus dolomieu Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2921
                     /organism="Micropterus dolomieu"
                     /mol_type="mRNA"
                     /isolate="WLL.071019.BEF.003"
                     /isolation_source="freshwater lake"
                     /db_xref="taxon:147949"
                     /tissue_type="fin"
                     /ecotype="Adirondacks"
                     /country="USA: Adirondacks, Woodhull Lake"
                     /lat_lon="43.598747 N 74.970827 W"
                     /collection_date="2019-07-10"
                     /linkage_group="LG12"
     gene            1..2921
                     /gene="LOC123979770"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 51 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 16 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:123979770"
     CDS             98..1330
                     /gene="LOC123979770"
                     /codon_start=1
                     /product="arrestin red cell-like"
                     /protein_id="XP_045919758.1"
                     /db_xref="GeneID:123979770"
                     /translation="
MGDKAGTRVFKKSSPNDKLTVYLGKRDFVDHLDHVDPVDGMLLVDPEYLKGRKVFVTLTCAFCYGREDLDVLGLSFRKDLYVSTVQVFPPLQEEKKPLSHLQERLLKKLGHRAYPFNFTIPQNLPCSVTLQPGPEDTGKACGVNYELRAFCAKTVEEKIHQRNSVHLVIRKVQYAPEKPGPQPMMETSRSFLMSDRALHLEASLDKELYYHGEPISVNVHVTNNSSKTVKRVKISVRQYADICLFSTAQYKCPVAQVEADHQVSPSSTSCQVYSLTPVLGINREKRGLALDGKLKHEDTNLASSTIVKEGTNKEMMGIMVSYRVKVKLVVSLGGDVAVELPFVLMHPKPIDQPSSQPQSIAPEADAPVDTNLIEFDMHTSSQADDFVFEDFARLRLTGMMDDKDEDKPFC"
     misc_feature    152..622
                     /gene="LOC123979770"
                     /note="Arrestin (or S-antigen), N-terminal domain; Region:
                     Arrestin_N; pfam00339"
                     /db_xref="CDD:425619"
     misc_feature    677..1144
                     /gene="LOC123979770"
                     /note="Arrestin (or S-antigen), C-terminal domain; Region:
                     Arrestin_C; smart01017"
                     /db_xref="CDD:214976"
     polyA_site      2921
                     /gene="LOC123979770"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
gctgaatgatcccaaaaagttggcaagaacagcgaacagcccggaccagcacagacagcagaccagcacatcggcgactgtccacaggaccgaggagatgggggacaaagcggggaccagagtctttaagaagtcgagtccgaacgacaagctcactgtttatcttggaaagcgagactttgttgatcacttagaccacgtagatccagtagatggaatgctccttgtagacccagagtatctgaaaggtcgaaaagtgtttgtgactctgacctgtgcgttttgttacggtcgggaggacctggatgtcctaggcctttccttccgtaaagatctgtatgtcagcaccgtccaggtctttcctcctctgcaggaggaaaagaagcctctgagccacctgcaggagaggctgctgaagaagctgggtcatcgtgcctaccccttcaacttcactatcccccagaacctgccttgctcagtgaccctccagccaggtccagaggacactgggaaggcatgtggtgtgaactatgagcttcgagcattctgtgccaagactgtggaggagaagatccatcaaaggaactctgtgcatctggtgatcaggaaagttcagtacgccccagagaagccaggtccacagccgatgatggagaccagtcgcagcttcctgatgtctgatagagctttacacctagaggcctcattggataaggagctgtactaccacggtgagcccatcagtgtcaatgtccatgtcaccaacaactcttctaagactgtcaaaagggtgaagatatctgttcgtcagtatgctgatatttgtctgttctccaccgctcagtataagtgcccagttgcccaggttgaagcagaccaccaggtttctcccagctccacctcctgccaggtctactctctgacccccgtgctgggtataaacagggaaaagagaggcctggccctggatggaaagctgaagcatgaagacaccaacctggcctccagcaccatagtaaaagaagggaccaacaaggagatgatgggcatcatggtttcctacagagtcaaagtcaaactggtggtgtctcttgggggggatgtagcagtggaacttccttttgtcctgatgcatcccaaacctatagaccagcccagctcccaaccacagtcaattgctccagaggctgatgctcctgtggatacaaacctcatagagtttgacatgcatacttcctctcaggctgatgactttgtgtttgaagattttgctcgtctgcggttgacagggatgatggatgacaaggatgaggacaaacccttctgttagctcctcctccttcagcatcagttacttgtctgagcgaaaggttacaaaccactcaaccaagaacccaagaagaagaaaatgagcagacggccagatgtgtgaggacaacctctggagtcttgccacatgctttgattgtaccatttactctgtatgggctatggtatgtctgttgtttaaggagcagccaacaaaaaatcagctgcttggtgtcttacacatatagacctatcataacatagatgacaggtcacttgttgttttcaggtatcagtgaaaccgctaaaagctatgacagaggaacctaacttttattgcttcctattgatttgtccttcacctctttatactcaagtaaatcgagtgcatttttatgactgcaccggccacagctgtggctggaggctgtatgttttcaggttgtctgttatctgtccgtcccattcttgtttttcagatgtggtgcaaacatccgcttaaactaaagcatgaactgagttcattgagtatggtggtcaaaggtcaaggtcactgtgacctcacgcctgtcccattcacgtgaacgtggtatctcaggaatacctggagggaagtggcacaaacgtccactctgactccagaatgaactgattttagtggtctacgctccactttattacattattcaacaccataactcaggaacagaaggtatgattgtcaccatatttcacagtgggttggacactgaataggtaacacttttgactgaaaggtcaaaggtcattgtgaccttaaaatacatttacacattttgggtagcactaatctgtaagaacccatctttacatagtaatcgaatttatgtgtaccttttcaaccaatacatctatgaatagttccacaatgtatattcactggtatcatatcataaatatagtagtataattaccttttttcaaatcctagtattaagtaagtaagtatttactgcatctatgagtctggacacatagatggaaactacaactcactggttggccgaggcatacaattgcggcagttctggttatatttggttcagaaaaagctagagttaaatttgtaaacaggaatgattttattttagtagttatttttgctaatatatatttcccttatctcaagttggatggaacagatatcaataggtgaactaactgaaacaaattcccatcatgcatacagatttttaatgtctgttgaacagccaggagttgtttgactctagctttggccttccagtgcgagatcagctcttctttagtgcacctccaaaaaatacactattattctgatgattagcactgtgtagttagtatgcttttccaggtccaaaattgtaaagtgaaaggggtacactgattttcacttatttgagacattctcgtgctaggtgcacagtgcctcgtgtctctcctggatctacacacaatcctaatgcccagtatgtacaagttattagccctgtgtcccaaatgcatacaatgtactcctatatatgaccacattttgaatacgcagtttgttctcactggcaaataaaaaataaacacttacaaatgctgcttaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]