2024-03-29 18:38:39, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_046063802 2921 bp mRNA linear VRT 05-MAR-2022 DEFINITION PREDICTED: Micropterus dolomieu arrestin red cell-like (LOC123979770), mRNA. ACCESSION XM_046063802 VERSION XM_046063802.1 DBLINK BioProject: PRJNA800460 KEYWORDS RefSeq. SOURCE Micropterus dolomieu (smallmouth bass) ORGANISM Micropterus dolomieu Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Centrarchiformes; Centrarchoidei; Centrarchidae; Micropterus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_060161) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Micropterus dolomieu Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2921 /organism="Micropterus dolomieu" /mol_type="mRNA" /isolate="WLL.071019.BEF.003" /isolation_source="freshwater lake" /db_xref="taxon:147949" /tissue_type="fin" /ecotype="Adirondacks" /country="USA: Adirondacks, Woodhull Lake" /lat_lon="43.598747 N 74.970827 W" /collection_date="2019-07-10" /linkage_group="LG12" gene 1..2921 /gene="LOC123979770" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 51 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns" /db_xref="GeneID:123979770" CDS 98..1330 /gene="LOC123979770" /codon_start=1 /product="arrestin red cell-like" /protein_id="XP_045919758.1" /db_xref="GeneID:123979770" /translation="
MGDKAGTRVFKKSSPNDKLTVYLGKRDFVDHLDHVDPVDGMLLVDPEYLKGRKVFVTLTCAFCYGREDLDVLGLSFRKDLYVSTVQVFPPLQEEKKPLSHLQERLLKKLGHRAYPFNFTIPQNLPCSVTLQPGPEDTGKACGVNYELRAFCAKTVEEKIHQRNSVHLVIRKVQYAPEKPGPQPMMETSRSFLMSDRALHLEASLDKELYYHGEPISVNVHVTNNSSKTVKRVKISVRQYADICLFSTAQYKCPVAQVEADHQVSPSSTSCQVYSLTPVLGINREKRGLALDGKLKHEDTNLASSTIVKEGTNKEMMGIMVSYRVKVKLVVSLGGDVAVELPFVLMHPKPIDQPSSQPQSIAPEADAPVDTNLIEFDMHTSSQADDFVFEDFARLRLTGMMDDKDEDKPFC"
misc_feature 152..622 /gene="LOC123979770" /note="Arrestin (or S-antigen), N-terminal domain; Region: Arrestin_N; pfam00339" /db_xref="CDD:425619" misc_feature 677..1144 /gene="LOC123979770" /note="Arrestin (or S-antigen), C-terminal domain; Region: Arrestin_C; smart01017" /db_xref="CDD:214976" polyA_site 2921 /gene="LOC123979770" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
gctgaatgatcccaaaaagttggcaagaacagcgaacagcccggaccagcacagacagcagaccagcacatcggcgactgtccacaggaccgaggagatgggggacaaagcggggaccagagtctttaagaagtcgagtccgaacgacaagctcactgtttatcttggaaagcgagactttgttgatcacttagaccacgtagatccagtagatggaatgctccttgtagacccagagtatctgaaaggtcgaaaagtgtttgtgactctgacctgtgcgttttgttacggtcgggaggacctggatgtcctaggcctttccttccgtaaagatctgtatgtcagcaccgtccaggtctttcctcctctgcaggaggaaaagaagcctctgagccacctgcaggagaggctgctgaagaagctgggtcatcgtgcctaccccttcaacttcactatcccccagaacctgccttgctcagtgaccctccagccaggtccagaggacactgggaaggcatgtggtgtgaactatgagcttcgagcattctgtgccaagactgtggaggagaagatccatcaaaggaactctgtgcatctggtgatcaggaaagttcagtacgccccagagaagccaggtccacagccgatgatggagaccagtcgcagcttcctgatgtctgatagagctttacacctagaggcctcattggataaggagctgtactaccacggtgagcccatcagtgtcaatgtccatgtcaccaacaactcttctaagactgtcaaaagggtgaagatatctgttcgtcagtatgctgatatttgtctgttctccaccgctcagtataagtgcccagttgcccaggttgaagcagaccaccaggtttctcccagctccacctcctgccaggtctactctctgacccccgtgctgggtataaacagggaaaagagaggcctggccctggatggaaagctgaagcatgaagacaccaacctggcctccagcaccatagtaaaagaagggaccaacaaggagatgatgggcatcatggtttcctacagagtcaaagtcaaactggtggtgtctcttgggggggatgtagcagtggaacttccttttgtcctgatgcatcccaaacctatagaccagcccagctcccaaccacagtcaattgctccagaggctgatgctcctgtggatacaaacctcatagagtttgacatgcatacttcctctcaggctgatgactttgtgtttgaagattttgctcgtctgcggttgacagggatgatggatgacaaggatgaggacaaacccttctgttagctcctcctccttcagcatcagttacttgtctgagcgaaaggttacaaaccactcaaccaagaacccaagaagaagaaaatgagcagacggccagatgtgtgaggacaacctctggagtcttgccacatgctttgattgtaccatttactctgtatgggctatggtatgtctgttgtttaaggagcagccaacaaaaaatcagctgcttggtgtcttacacatatagacctatcataacatagatgacaggtcacttgttgttttcaggtatcagtgaaaccgctaaaagctatgacagaggaacctaacttttattgcttcctattgatttgtccttcacctctttatactcaagtaaatcgagtgcatttttatgactgcaccggccacagctgtggctggaggctgtatgttttcaggttgtctgttatctgtccgtcccattcttgtttttcagatgtggtgcaaacatccgcttaaactaaagcatgaactgagttcattgagtatggtggtcaaaggtcaaggtcactgtgacctcacgcctgtcccattcacgtgaacgtggtatctcaggaatacctggagggaagtggcacaaacgtccactctgactccagaatgaactgattttagtggtctacgctccactttattacattattcaacaccataactcaggaacagaaggtatgattgtcaccatatttcacagtgggttggacactgaataggtaacacttttgactgaaaggtcaaaggtcattgtgaccttaaaatacatttacacattttgggtagcactaatctgtaagaacccatctttacatagtaatcgaatttatgtgtaccttttcaaccaatacatctatgaatagttccacaatgtatattcactggtatcatatcataaatatagtagtataattaccttttttcaaatcctagtattaagtaagtaagtatttactgcatctatgagtctggacacatagatggaaactacaactcactggttggccgaggcatacaattgcggcagttctggttatatttggttcagaaaaagctagagttaaatttgtaaacaggaatgattttattttagtagttatttttgctaatatatatttcccttatctcaagttggatggaacagatatcaataggtgaactaactgaaacaaattcccatcatgcatacagatttttaatgtctgttgaacagccaggagttgtttgactctagctttggccttccagtgcgagatcagctcttctttagtgcacctccaaaaaatacactattattctgatgattagcactgtgtagttagtatgcttttccaggtccaaaattgtaaagtgaaaggggtacactgattttcacttatttgagacattctcgtgctaggtgcacagtgcctcgtgtctctcctggatctacacacaatcctaatgcccagtatgtacaagttattagccctgtgtcccaaatgcatacaatgtactcctatatatgaccacattttgaatacgcagtttgttctcactggcaaataaaaaataaacacttacaaatgctgcttaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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