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2024-04-20 19:56:58, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_045858467            8145 bp    mRNA    linear   MAM 12-JAN-2022
DEFINITION  PREDICTED: Phyllostomus hastatus argonaute RISC component 1 (AGO1),
            transcript variant X3, mRNA.
ACCESSION   XM_045858467
VERSION     XM_045858467.1
DBLINK      BioProject: PRJNA768865
KEYWORDS    RefSeq.
SOURCE      Phyllostomus hastatus (greater spear-nosed bat)
  ORGANISM  Phyllostomus hastatus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Chiroptera; Microchiroptera;
            Phyllostomidae; Phyllostominae; Phyllostomus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_025334013.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Phyllostomus hastatus Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8145
                     /organism="Phyllostomus hastatus"
                     /mol_type="mRNA"
                     /isolate="PE091"
                     /db_xref="taxon:9423"
                     /chromosome="Unknown"
                     /sex="male"
                     /tissue_type="liver"
                     /dev_stage="adult"
                     /country="Peru: Loreto, Requena, Jenaro Herrera"
                     /collection_date="2015-05-20"
                     /collected_by="Laurel R. Yohe"
     gene            1..8145
                     /gene="AGO1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 5 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:123831564"
     CDS             160..2289
                     /gene="AGO1"
                     /codon_start=1
                     /product="protein argonaute-1 isoform X3"
                     /protein_id="XP_045714423.1"
                     /db_xref="GeneID:123831564"
                     /translation="
MPHRVGACARGTSSLPVPARYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRVSRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
     misc_feature    226..378
                     /gene="AGO1"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:430160"
     misc_feature    379..741
                     /gene="AGO1"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(535..537,580..582,622..624,634..636,688..690,
                     709..711,715..717)
                     /gene="AGO1"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    874..2160
                     /gene="AGO1"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1294..1296,1306..1308,1342..1353,1360..1362,
                     1384..1386,1393..1395,1405..1407,1417..1419)
                     /gene="AGO1"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(1498..1500,1504..1506,1714..1716,2128..2130)
                     /gene="AGO1"
                     /note="active site"
                     /db_xref="CDD:240015"
     polyA_site      8145
                     /gene="AGO1"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
tcaaggtctccatcaagtggctggccattgtgagctggcgcatgctgcatgaggccctggtcagtggccagatccctgttccgctggagtctgtgcaagccctggatgtggccatgcggcacctggcctccatgaggccagggctcctccgtgcccaggatgcctcacagggtgggggcctgtgcccgagggaccagttctctgcctgtccctgccaggtacacccctgtgggccgctccttcttctcaccgcctgagggctactaccacccgctggggggtgggcgcgaggtctggttcggctttcaccagtctgtgcgccctgccatgtggaagatgatgctcaacattgatgtctcagccactgccttctacaaggcgcagccagtgatcgagttcatgtgtgaggtgctggacatcaggaacatagatgagcagcccaagccgctcacagactctcagcgtgtgcgctttaccaaggagatcaagggcctgaaggtggaagtgacccactgtggacagatgaagaggaaataccgcgtgtgtaatgttacccgccgccctgccagccatcagacgtttcccttgcagttggagagtggacagactgtggagtgcacagtggcacagtatttcaagcagaaatataaccttcagctcaagtatccccacctgccctgcctgcaagttggccaggaacaaaagcatacctacctgcccttagaggtctgtaacattgtggctgggcagcgctgcattaagaagctgactgacaaccagacttcgaccatgataaaggctacagctagatcagccccagacagacaggaggagatcagccgcctgatgaagaatgccagctataacctagacccctacatccaggaatttgggatcaaagtgaaggatgacatgacggaggtgacgggacgagtgctgccggctcccatcttgcagtatggcggccgggtgagcaggaaccgggccattgccacacccaatcagggtgtctgggacatgcgggggaaacagttctacaatgggattgagatcaaagtctgggccatcgcctgcttcgcaccccaaaaacagtgtcgagaagaagtactcaagaacttcacagaccagctgcggaagatttccaaggatgcagggatgcccatccagggccagccttgcttctgcaaatatgcgcagggggcagacagcgtggagcccatgttccggcatctcaagaacacctactcagggctgcagctcattatcgtcatcctgccagggaagacgccagtgtatgctgaggtgaaacgtgttggagatacactcttggggatggctacgcagtgtgtacaagtgaagaacgtggtcaagacctcacctcagactctgtcaaacctctgcctgaagatcaatgtcaaacttggtggcataaacaacatcctagtcccacaccagcgctctgcagtctttcaacagccagtgatattcctgggagcagatgttacacaccccccagcgggggatgggaaaaaaccttctatcacagcagtggtaggcagcatggatgcccaccccagccgttactgtgctactgtgcgggtgcagagacctcggcaggagatcattgaagacttatcttacatggtgcgtgagctgctcatccagttctacaagtccacccgcttcaagcctacccgtatcatcttctaccgagatggggttcccgaaggccagctccctcagatactccactatgagctgctggccattcgtgatgcctgcatcaaactggaaaaggactaccagcctggaatcacttatattgtggtgcagaaacgccatcacacccgccttttttgtgctgacaagaatgagcgaattgggaagagtggtaacatcccagctgggaccactgtggacaccaacatcacccacccgtttgagtttgacttctacctgtgcagccacgcaggcatccagggcaccagccgaccatcccattactatgtcctttgggatgacaaccgtttcacagcggatgagctccagatcttgacgtaccagctatgccacacttacgtacgatgcacacgctccgtctccatcccagcacctgcctactatgcccgcctggtagctttccgggcacgatatcacctagtggacaaggaacatgacagtggagaggggagccacatatcggggcagagcaatgggcgggaccctcaggccctggccaaagccgtgcaggttcaccaggatactctgcgcaccatgtacttcgcttgaaggcagaaagctgttacctcactggatagaagaaagttttccaagccccaagagctgtgctgcccaaatccagaggaagcagggaggagggaggtggagtagggaggagtgcagaaggccttgtttccttctacagatggggcaaaagggtggggaacagggccagtaagccagaacaccagccagaaatttctgatattcacctcatacccctcaccccatcttgtcacatctggccctgaccactggaccaagaggggcagcaccggtgcccaccacacacacaggtgtctcatgtgactcacagtgctaaagactcatgcctggcagcttggtaaggtcggctctgcagtccttcggacaaaagctggtaggtttgggttcgatactttagatgggaaagtgaggtacttgagaaagtgggtgggaggagggaaggattttttaggagccttaatcagaaaaggtctagatttgtttaagaagaaaaacgaaaccagacccagatcaatattttaggatacaagatgttttgatgggttaagtatccactttgtaggaaggttttttaatgctaatggttttggttgctcctccccctgccgccacccccccccccttttccttattcttctctctctaccttttcctaccctaccttgtacctcctccctgataagacatccagcccctaatatgacttaaggcactatggcacttagctctgaagtgacatgaccctgtcttccttccgcctgctggtgggtaaccagtgccttccctgtaacggtaatgctgcagaactgcaaccttttgtacctttctttggggggatggggtgggggtgggagaggaggtaggtaggtgggtaagaaatacccctaacccaacaagcctccagccagaccgccagctattttgcatttaaaggaattgactttcatattcattgagctttttaaaaggttacaacctcaagatggttaaaatccattgacatttgcactttcagacctgacaagtctctgaagctgctgagatgactggctatacctcctttcctccctgtcctcccaccaccctccccgcttgcctgggtctggagttactttcatagcttttctcactcttggcttatttttttcccccaatggtcaagtctcgtatgtttcaatatttcttaactggggtgtcttaaaacaagcgatccttaggtctaaaataagaaaaaagagcaaaaactaaatgttatttttataccataacttgagtctattgccaaaatctggatatccctccaatgcccaatgagtttacatcccagaaacattgagccattagaaggaactctgtacctgacttgttctttggcctggctgggtaaggggcggttatctccccaatgtggggctcaggctccatctttcctccgtgcagaaaatacctttttcttgctacagctcccccctctgcactgccctgcactctttcctgcaagtgcgtcttccccttcctctggactgtctgacactttggttcacccagattccagcgtgtcctgtgaataggctggaggattttgctgctccctattgcttctgtttacacgaatgaatttttcctggtttcccgctagggcatgtgaatgagtggcatgggctttttttttttatttgtttgtttgtctgtttgcctggatagaaatggggtttggctgtcttgtagaaccggaagtgtagggggttctagcttggtgcctgctggcctaaaggcaaggccccctctttccttgactgttcattttctcctttcccactgcttgggatgagaacttgcagcttcagtatggaaatttctctttttgagtagcctgggcttgggtttgccccagtctggtgataaagccatgacactttagacctagttcaggcatggaggccagccggaggaaagccggtctgaatctggccctgagcggttaaagctaccactttccctccccagcagcccttgtacagacccagatttgctatgcaaaacagtcactcccaggttctgttctggttggctactttgttcagtaacttcacaaaacatagcacaaacattgactatggaggaaggcatcaggactgttgagtaactcttcctttacttctttcctactggctacagcattgggtgccccatgggcacagcccagctgaagaacagaatggagggctgtgggaggagttagctcactggagagcctacattccttacacaagtgcctaaagagagtgatgccaacactccatctgccctgtccatcgccgtcatatactgtctacttcatgttcagtcacccttaggggaggggagctctgcatgttctcttcttgggacagtgggctctgcatgttctcttcttgggtgcattttggggctaggatcagggcattattcctgaagggtccagtcattcaccagcatttgcaattatccatagggagctggtggtagccacctactctcagcaacaagtttgtgttctttttctctttgcctcactctctccagttgagtttggagctggggcttgaaatgtattttttagccctttggcattgcacatgccattcaacaaataaaagcaagagaaacagcttgggcaatagcaagaaaatgacttcttgctctgattttattatttttttaatctttgagacttgaaaaacaacccttgaccttgaggattattcttgtttgaaaggtggtgcatgcagattgggaattggtattggcaacaagctttggctttcttggatatggtttaggtggtgctgctcacttaagctctgaggaagcactggataaccccagcctcatctttttagatcagtctcgtgctccttcgttccactctttgccttgcttttcctcttctctctttgcctggcttccttttttttttttttccttttcactcagcttgcttgccgatctgcctgcctgatgatgaattctctatgtggctacaatgatcccactgttagctgggaaggtcaggcttagctttttggctgcagaagacccaagaatctgttccccaagcccagtgatgttctctttgggctggactgccctcgagcttacaaaggggctgagcagcaggcctgcccaaatggcttgaaatcaggggcttctgtcaactttcacacctgtccactccttggagttagtttctctcattgctttttcttgatctggttccatttttctctactttgggcttccctatcctgagaatctgttaggattgagctatttaggtatccagggttcattgttaggggatagacatggggaaagaagagatcaatagaaagagaatggacagaatttggataaaaaatgggaagggagagcactgcttattgatcatttttccagtccagcctgggcccttgggggttgaggtgctattgcttgtctctggggataagccaggtctcccgttgctgggaacatcgggctggaataatgctgaagaagaaggtacttaaaggcataaaacctccctaaaaagctcctggttttcacctagtagatcgttcctcttcagctaagctacagtgttcttggagttttctttttcttgtccagaattctgtaaatgagacttaacacccaagatgggcagccaaagagatggttcttagctggcccgtggaatatctgcaaggtgggtagggcagtgttttagacctggcttcatgagtaacacagggaaatggaagttttttcctcttcaaggtagaaagtcatctcaaactagccaaaatgcagttttgggaactacataggggggagctatttttatttatatttattgggcctaggccaatccaggatggtagctgggatgccttcctttttaaagtctgatcatggcagggatgtgcggggcactcttttctatttggccttctaagcagattggggagaagggaagctccggttttctgtttcccccatttattaggacttgccttctccctgagcagggagaagctaggttggtgctctcctcttactctactcctattgacttagaacctctggctgttgtttgggagcccaagaatgggagtggagggaatggctcaaaacaacaaaaaatcagaataaggtgaggaaggcagacttcctttttttaaaaaggaaaataaactccaaggactgtgcaagtaaagacaatgtatcaaatgcacagtgtcccctggtatagtagcaataagaaagaatgaaatgactttcctgtacacgcagtccaacctgaatggtgtgcgatgttggcacttagcagccatctggtgggcatgtgtgactactctgggttttactttagtttctaaactttttatccttctcaagtgcagcatggatagggaattgtccctggagccccacagctgtgtacttgtttgcatttgtttccctttgagacttgtgtttgtgtcctgctctgagctgtaccttgtccagtctgttattgtaaaattatcccagcagctgtaatgtacagttacttctaaagcaagcaacagcagcagcacaattccgtgttttataaagacattggtggcttctgtttctaaagtgcggtctctctctctctctctttttttcttgttggcgaagcaaactgttgggattaattatatctctgataaattttaagctagaataattgattgccacaagagcagaaccatcacttctaaaggaggaaagtgcaaaaaacaaatcccagagtgttgaaactgcagattgcatgtaatcctatttcacagggcctctatttattcttcaacaaacatgcaaagtactgtgtccagaaatattgttgggaaaaaaggcaggcacaattcaaaaatgaggaagactctccttaaggagcttaaaagtttggttggggttatgagtagccacatggtcgcctggtacaggaaagagatgatgagggactgaaacaaggctataaggctatagcaatgaagatgggaaagggcatttgagaaacactcaggagttagaattaataggactgaatggataatggaaggcgaagagagaagtagaagctaataatgaccacgtttccgcttgagcaagtgactgcactgggacattcttctaaccaagatgtgaatagaaaagactatagaaggaacctggtgaattttgagaagaaagacaattagccttgtagagactgagttttgaggttcccatggggcagtgaggttgaggtttccagtaaacaacttacgttttggtgctcagggaagactacaaaactgcaattatagatgtgggattatagatgatagttaaagccataggaatggaaaaaaatggtttagataaagagtagagtgagagaaacatgtacaactctaggaaacacaggttaagggatgcggaaagcaagcggagcctaagataactgtcaaatcactagtagatattttgtatatttttgatttaatgaggtgggagaaaagtcaaaagaatggaatagaatccaagaagggtgtgattaacaacatgaactgctacagtgggaaaggggtatatttttctactcagtttaccatcctccaccccatcttctttgggattttagaactttatggtcattctccagtatttcttgaaaaggagcattggaaaaacctaatttaaataaggctaagactaggtcttccaagctgttcaccacaaccgccaccaccacctccagcttcctcctgttttcaggagatacttgtaaaagaataaaataaacaagtctaattttgttcctaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]