2024-04-20 19:56:58, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_045858467 8145 bp mRNA linear MAM 12-JAN-2022 DEFINITION PREDICTED: Phyllostomus hastatus argonaute RISC component 1 (AGO1), transcript variant X3, mRNA. ACCESSION XM_045858467 VERSION XM_045858467.1 DBLINK BioProject: PRJNA768865 KEYWORDS RefSeq. SOURCE Phyllostomus hastatus (greater spear-nosed bat) ORGANISM Phyllostomus hastatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Microchiroptera; Phyllostomidae; Phyllostominae; Phyllostomus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_025334013.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Phyllostomus hastatus Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8145 /organism="Phyllostomus hastatus" /mol_type="mRNA" /isolate="PE091" /db_xref="taxon:9423" /chromosome="Unknown" /sex="male" /tissue_type="liver" /dev_stage="adult" /country="Peru: Loreto, Requena, Jenaro Herrera" /collection_date="2015-05-20" /collected_by="Laurel R. Yohe" gene 1..8145 /gene="AGO1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns" /db_xref="GeneID:123831564" CDS 160..2289 /gene="AGO1" /codon_start=1 /product="protein argonaute-1 isoform X3" /protein_id="XP_045714423.1" /db_xref="GeneID:123831564" /translation="
MPHRVGACARGTSSLPVPARYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRVSRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
misc_feature 226..378 /gene="AGO1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 379..741 /gene="AGO1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(535..537,580..582,622..624,634..636,688..690, 709..711,715..717) /gene="AGO1" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 874..2160 /gene="AGO1" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1294..1296,1306..1308,1342..1353,1360..1362, 1384..1386,1393..1395,1405..1407,1417..1419) /gene="AGO1" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1498..1500,1504..1506,1714..1716,2128..2130) /gene="AGO1" /note="active site" /db_xref="CDD:240015" polyA_site 8145 /gene="AGO1" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
tcaaggtctccatcaagtggctggccattgtgagctggcgcatgctgcatgaggccctggtcagtggccagatccctgttccgctggagtctgtgcaagccctggatgtggccatgcggcacctggcctccatgaggccagggctcctccgtgcccaggatgcctcacagggtgggggcctgtgcccgagggaccagttctctgcctgtccctgccaggtacacccctgtgggccgctccttcttctcaccgcctgagggctactaccacccgctggggggtgggcgcgaggtctggttcggctttcaccagtctgtgcgccctgccatgtggaagatgatgctcaacattgatgtctcagccactgccttctacaaggcgcagccagtgatcgagttcatgtgtgaggtgctggacatcaggaacatagatgagcagcccaagccgctcacagactctcagcgtgtgcgctttaccaaggagatcaagggcctgaaggtggaagtgacccactgtggacagatgaagaggaaataccgcgtgtgtaatgttacccgccgccctgccagccatcagacgtttcccttgcagttggagagtggacagactgtggagtgcacagtggcacagtatttcaagcagaaatataaccttcagctcaagtatccccacctgccctgcctgcaagttggccaggaacaaaagcatacctacctgcccttagaggtctgtaacattgtggctgggcagcgctgcattaagaagctgactgacaaccagacttcgaccatgataaaggctacagctagatcagccccagacagacaggaggagatcagccgcctgatgaagaatgccagctataacctagacccctacatccaggaatttgggatcaaagtgaaggatgacatgacggaggtgacgggacgagtgctgccggctcccatcttgcagtatggcggccgggtgagcaggaaccgggccattgccacacccaatcagggtgtctgggacatgcgggggaaacagttctacaatgggattgagatcaaagtctgggccatcgcctgcttcgcaccccaaaaacagtgtcgagaagaagtactcaagaacttcacagaccagctgcggaagatttccaaggatgcagggatgcccatccagggccagccttgcttctgcaaatatgcgcagggggcagacagcgtggagcccatgttccggcatctcaagaacacctactcagggctgcagctcattatcgtcatcctgccagggaagacgccagtgtatgctgaggtgaaacgtgttggagatacactcttggggatggctacgcagtgtgtacaagtgaagaacgtggtcaagacctcacctcagactctgtcaaacctctgcctgaagatcaatgtcaaacttggtggcataaacaacatcctagtcccacaccagcgctctgcagtctttcaacagccagtgatattcctgggagcagatgttacacaccccccagcgggggatgggaaaaaaccttctatcacagcagtggtaggcagcatggatgcccaccccagccgttactgtgctactgtgcgggtgcagagacctcggcaggagatcattgaagacttatcttacatggtgcgtgagctgctcatccagttctacaagtccacccgcttcaagcctacccgtatcatcttctaccgagatggggttcccgaaggccagctccctcagatactccactatgagctgctggccattcgtgatgcctgcatcaaactggaaaaggactaccagcctggaatcacttatattgtggtgcagaaacgccatcacacccgccttttttgtgctgacaagaatgagcgaattgggaagagtggtaacatcccagctgggaccactgtggacaccaacatcacccacccgtttgagtttgacttctacctgtgcagccacgcaggcatccagggcaccagccgaccatcccattactatgtcctttgggatgacaaccgtttcacagcggatgagctccagatcttgacgtaccagctatgccacacttacgtacgatgcacacgctccgtctccatcccagcacctgcctactatgcccgcctggtagctttccgggcacgatatcacctagtggacaaggaacatgacagtggagaggggagccacatatcggggcagagcaatgggcgggaccctcaggccctggccaaagccgtgcaggttcaccaggatactctgcgcaccatgtacttcgcttgaaggcagaaagctgttacctcactggatagaagaaagttttccaagccccaagagctgtgctgcccaaatccagaggaagcagggaggagggaggtggagtagggaggagtgcagaaggccttgtttccttctacagatggggcaaaagggtggggaacagggccagtaagccagaacaccagccagaaatttctgatattcacctcatacccctcaccccatcttgtcacatctggccctgaccactggaccaagaggggcagcaccggtgcccaccacacacacaggtgtctcatgtgactcacagtgctaaagactcatgcctggcagcttggtaaggtcggctctgcagtccttcggacaaaagctggtaggtttgggttcgatactttagatgggaaagtgaggtacttgagaaagtgggtgggaggagggaaggattttttaggagccttaatcagaaaaggtctagatttgtttaagaagaaaaacgaaaccagacccagatcaatattttaggatacaagatgttttgatgggttaagtatccactttgtaggaaggttttttaatgctaatggttttggttgctcctccccctgccgccacccccccccccttttccttattcttctctctctaccttttcctaccctaccttgtacctcctccctgataagacatccagcccctaatatgacttaaggcactatggcacttagctctgaagtgacatgaccctgtcttccttccgcctgctggtgggtaaccagtgccttccctgtaacggtaatgctgcagaactgcaaccttttgtacctttctttggggggatggggtgggggtgggagaggaggtaggtaggtgggtaagaaatacccctaacccaacaagcctccagccagaccgccagctattttgcatttaaaggaattgactttcatattcattgagctttttaaaaggttacaacctcaagatggttaaaatccattgacatttgcactttcagacctgacaagtctctgaagctgctgagatgactggctatacctcctttcctccctgtcctcccaccaccctccccgcttgcctgggtctggagttactttcatagcttttctcactcttggcttatttttttcccccaatggtcaagtctcgtatgtttcaatatttcttaactggggtgtcttaaaacaagcgatccttaggtctaaaataagaaaaaagagcaaaaactaaatgttatttttataccataacttgagtctattgccaaaatctggatatccctccaatgcccaatgagtttacatcccagaaacattgagccattagaaggaactctgtacctgacttgttctttggcctggctgggtaaggggcggttatctccccaatgtggggctcaggctccatctttcctccgtgcagaaaatacctttttcttgctacagctcccccctctgcactgccctgcactctttcctgcaagtgcgtcttccccttcctctggactgtctgacactttggttcacccagattccagcgtgtcctgtgaataggctggaggattttgctgctccctattgcttctgtttacacgaatgaatttttcctggtttcccgctagggcatgtgaatgagtggcatgggctttttttttttatttgtttgtttgtctgtttgcctggatagaaatggggtttggctgtcttgtagaaccggaagtgtagggggttctagcttggtgcctgctggcctaaaggcaaggccccctctttccttgactgttcattttctcctttcccactgcttgggatgagaacttgcagcttcagtatggaaatttctctttttgagtagcctgggcttgggtttgccccagtctggtgataaagccatgacactttagacctagttcaggcatggaggccagccggaggaaagccggtctgaatctggccctgagcggttaaagctaccactttccctccccagcagcccttgtacagacccagatttgctatgcaaaacagtcactcccaggttctgttctggttggctactttgttcagtaacttcacaaaacatagcacaaacattgactatggaggaaggcatcaggactgttgagtaactcttcctttacttctttcctactggctacagcattgggtgccccatgggcacagcccagctgaagaacagaatggagggctgtgggaggagttagctcactggagagcctacattccttacacaagtgcctaaagagagtgatgccaacactccatctgccctgtccatcgccgtcatatactgtctacttcatgttcagtcacccttaggggaggggagctctgcatgttctcttcttgggacagtgggctctgcatgttctcttcttgggtgcattttggggctaggatcagggcattattcctgaagggtccagtcattcaccagcatttgcaattatccatagggagctggtggtagccacctactctcagcaacaagtttgtgttctttttctctttgcctcactctctccagttgagtttggagctggggcttgaaatgtattttttagccctttggcattgcacatgccattcaacaaataaaagcaagagaaacagcttgggcaatagcaagaaaatgacttcttgctctgattttattatttttttaatctttgagacttgaaaaacaacccttgaccttgaggattattcttgtttgaaaggtggtgcatgcagattgggaattggtattggcaacaagctttggctttcttggatatggtttaggtggtgctgctcacttaagctctgaggaagcactggataaccccagcctcatctttttagatcagtctcgtgctccttcgttccactctttgccttgcttttcctcttctctctttgcctggcttccttttttttttttttccttttcactcagcttgcttgccgatctgcctgcctgatgatgaattctctatgtggctacaatgatcccactgttagctgggaaggtcaggcttagctttttggctgcagaagacccaagaatctgttccccaagcccagtgatgttctctttgggctggactgccctcgagcttacaaaggggctgagcagcaggcctgcccaaatggcttgaaatcaggggcttctgtcaactttcacacctgtccactccttggagttagtttctctcattgctttttcttgatctggttccatttttctctactttgggcttccctatcctgagaatctgttaggattgagctatttaggtatccagggttcattgttaggggatagacatggggaaagaagagatcaatagaaagagaatggacagaatttggataaaaaatgggaagggagagcactgcttattgatcatttttccagtccagcctgggcccttgggggttgaggtgctattgcttgtctctggggataagccaggtctcccgttgctgggaacatcgggctggaataatgctgaagaagaaggtacttaaaggcataaaacctccctaaaaagctcctggttttcacctagtagatcgttcctcttcagctaagctacagtgttcttggagttttctttttcttgtccagaattctgtaaatgagacttaacacccaagatgggcagccaaagagatggttcttagctggcccgtggaatatctgcaaggtgggtagggcagtgttttagacctggcttcatgagtaacacagggaaatggaagttttttcctcttcaaggtagaaagtcatctcaaactagccaaaatgcagttttgggaactacataggggggagctatttttatttatatttattgggcctaggccaatccaggatggtagctgggatgccttcctttttaaagtctgatcatggcagggatgtgcggggcactcttttctatttggccttctaagcagattggggagaagggaagctccggttttctgtttcccccatttattaggacttgccttctccctgagcagggagaagctaggttggtgctctcctcttactctactcctattgacttagaacctctggctgttgtttgggagcccaagaatgggagtggagggaatggctcaaaacaacaaaaaatcagaataaggtgaggaaggcagacttcctttttttaaaaaggaaaataaactccaaggactgtgcaagtaaagacaatgtatcaaatgcacagtgtcccctggtatagtagcaataagaaagaatgaaatgactttcctgtacacgcagtccaacctgaatggtgtgcgatgttggcacttagcagccatctggtgggcatgtgtgactactctgggttttactttagtttctaaactttttatccttctcaagtgcagcatggatagggaattgtccctggagccccacagctgtgtacttgtttgcatttgtttccctttgagacttgtgtttgtgtcctgctctgagctgtaccttgtccagtctgttattgtaaaattatcccagcagctgtaatgtacagttacttctaaagcaagcaacagcagcagcacaattccgtgttttataaagacattggtggcttctgtttctaaagtgcggtctctctctctctctctttttttcttgttggcgaagcaaactgttgggattaattatatctctgataaattttaagctagaataattgattgccacaagagcagaaccatcacttctaaaggaggaaagtgcaaaaaacaaatcccagagtgttgaaactgcagattgcatgtaatcctatttcacagggcctctatttattcttcaacaaacatgcaaagtactgtgtccagaaatattgttgggaaaaaaggcaggcacaattcaaaaatgaggaagactctccttaaggagcttaaaagtttggttggggttatgagtagccacatggtcgcctggtacaggaaagagatgatgagggactgaaacaaggctataaggctatagcaatgaagatgggaaagggcatttgagaaacactcaggagttagaattaataggactgaatggataatggaaggcgaagagagaagtagaagctaataatgaccacgtttccgcttgagcaagtgactgcactgggacattcttctaaccaagatgtgaatagaaaagactatagaaggaacctggtgaattttgagaagaaagacaattagccttgtagagactgagttttgaggttcccatggggcagtgaggttgaggtttccagtaaacaacttacgttttggtgctcagggaagactacaaaactgcaattatagatgtgggattatagatgatagttaaagccataggaatggaaaaaaatggtttagataaagagtagagtgagagaaacatgtacaactctaggaaacacaggttaagggatgcggaaagcaagcggagcctaagataactgtcaaatcactagtagatattttgtatatttttgatttaatgaggtgggagaaaagtcaaaagaatggaatagaatccaagaagggtgtgattaacaacatgaactgctacagtgggaaaggggtatatttttctactcagtttaccatcctccaccccatcttctttgggattttagaactttatggtcattctccagtatttcttgaaaaggagcattggaaaaacctaatttaaataaggctaagactaggtcttccaagctgttcaccacaaccgccaccaccacctccagcttcctcctgttttcaggagatacttgtaaaagaataaaataaacaagtctaattttgttcctaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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