2024-04-29 13:21:12, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_045627944 794 bp mRNA linear INV 29-DEC-2021 DEFINITION PREDICTED: Pieris rapae odorant receptor Or1-like (LOC123689126), mRNA. ACCESSION XM_045627944 VERSION XM_045627944.1 DBLINK BioProject: PRJNA789913 KEYWORDS RefSeq. SOURCE Pieris rapae (cabbage white) ORGANISM Pieris rapae Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Pieridae; Pierinae; Pieris. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_059512) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Pieris rapae Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..794 /organism="Pieris rapae" /mol_type="mRNA" /db_xref="taxon:64459" /chromosome="4" gene 1..794 /gene="LOC123689126" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:123689126" CDS 93..761 /gene="LOC123689126" /codon_start=1 /product="odorant receptor Or1-like" /protein_id="XP_045483900.1" /db_xref="GeneID:123689126" /translation="
MYEIAYLHQSLSLMLSASMNASKDIVVMALIAQCRCRFRLINIALKGLCRDLHIVNNRLSKKQEEIVTVRLGNFIAEHQDTLETVNELERCFTQPTFAQFTVSLAIICVTAFQLVFQTGNMLRMLSMTFYLLNMVDQVYLYCREGNELTIESENVSRSAYEWPWYTCSVRVRRSTLILMTRCCRTAKLTAGGFTTLSLTTFVSICKASYSFFTVLKQVDEDT"
misc_feature <93..719 /gene="LOC123689126" /note="7tm Odorant receptor; Region: 7tm_6; pfam02949" /db_xref="CDD:251636" ORIGIN
gatatactgttaatcaacacgttaactaatattttattctattcaatatattctaaacccccaggtaccctttcaacgcgtcccagtctccaatgtacgagatcgcctacctacatcagtcgctgtctctaatgctgtcagctagtatgaacgccagcaaagatattgtagtaatggcgcttattgctcaatgtcgctgcagatttcgactcattaacattgcattaaaagggttgtgcagagatttgcatattgttaataaccgtttatctaagaagcaagaagagattgtgacagttcgcctcggtaattttatagctgagcatcaagataccttggagacagtgaatgaactagaacgctgcttcacgcagccgaccttcgcacagttcaccgtatcactagccatcatatgcgtaaccgcctttcagcttgtttttcaaaccggtaatatgcttcgaatgctatctatgaccttctatctcctaaatatggtggaccaagtatacctttactgtcgcgaaggaaacgaacttactattgagagtgaaaacgtgtcacgttctgcgtacgagtggccgtggtatacgtgtagcgtgcgtgtacgtcgatcaacgttgatcctaatgacgcgttgttgccgcaccgccaagctcacagctgggggatttactactctttctcttactacgtttgtgagcatttgcaaagcatcgtattctttctttactgtccttaaacaagtagacgaagacacttaaaaatattataacttatcttaaatttaaatagcg
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]