2024-04-20 16:57:31, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_045520347 6987 bp mRNA linear MAM 15-DEC-2021 DEFINITION PREDICTED: Camelus bactrianus argonaute RISC catalytic component 3 (AGO3), transcript variant X3, mRNA. ACCESSION XM_045520347 VERSION XM_045520347.1 DBLINK BioProject: PRJNA269612 KEYWORDS RefSeq. SOURCE Camelus bactrianus (Bactrian camel) ORGANISM Camelus bactrianus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Camelus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_011514983.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Camelus bactrianus Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6987 /organism="Camelus bactrianus" /mol_type="mRNA" /db_xref="taxon:9837" /chromosome="Unknown" /sex="female" /tissue_type="blood" /country="China: Inner Mongolia Autonomous Region" /collection_date="04-Jun-2010" /breed="Alxa" gene 1..6987 /gene="AGO3" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns" /db_xref="GeneID:105072821" CDS 138..2018 /gene="AGO3" /codon_start=1 /product="protein argonaute-3 isoform X3" /protein_id="XP_045376303.1" /db_xref="GeneID:105072821" /translation="
MCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYTLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYETDPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMYFA"
misc_feature 138..479 /gene="AGO3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(273..275,318..320,360..362,372..374,426..428, 447..449,453..455) /gene="AGO3" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 612..1889 /gene="AGO3" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1023..1025,1035..1037,1071..1082,1089..1091, 1113..1115,1122..1124,1134..1136,1146..1148) /gene="AGO3" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1227..1229,1233..1235,1443..1445,1857..1859) /gene="AGO3" /note="active site" /db_xref="CDD:240015" ORIGIN
aaagagacctctggcagcagtgtggagaatagatagaggagaaaaaactaatctgagaagccagttaggaggctttttcaatcactagttcagtttctgccactgccttctacaaagcacaacctgtaattcagttcatgtgtgaagttcttgacattcataatattgatgagcaaccgagacctctgactgattctcatcgggtaaaattcaccaaagagataaaaggtctgaaggttgaagtgactcattgtggaacaatgagacggaaataccgtgtttgtaatgtaacaagaaggcctgccagtcatcaaacctttcctttacagttagaaaatggccaaactgtggagagaacagtagcacagtatttcagagaaaagtatactcttcagctgaagtacccacaccttccgtgtctacaagtggggcaggaacagaaacatacctatctgccactagaagtctgcaatattgtggcagggcaacgatgtatcaagaagctaacagacaatcagacctccacaatgatcaaagcaacagcaagatctgcgccagatagacaagaggaaattagcagattggtaagaagtgcaaattatgaaacagatccatttgttcaggagtttcaatttaaagttcgggatgaaatggcccatgtaaccggacgtgtacttccagcgcctatgctccagtatggaggccggaatcggacagtagcaacaccaagccacggagtatgggacatgcgagggaaacaattccacacaggagttgaaatcaaaatgtgggctatagcttgttttgccacacagaggcagtgcagagaagaaatattgaagggtttcacggaccagctgcgtaagatttctaaagatgcagggatgcctatccagggccagccttgcttctgcaagtatgcgcagggggcagacagtgtggagcccatgttccggcatctcaagaacacttactctgggctgcagctcattattgtcatcctgccagggaagacgccagtgtatgcggaggtgaaacgtgtcggagatacacttttgggtatggctacgcagtgtgttcaagtcaagaatgtaataaaaacatcccctcaaacgctctcaaacctgtgcctaaagataaatgttaaactcggagggatcaataatattcttgtacctcatcaaagaccatctgtgttccagcaaccagtgatctttttgggagcagacgtcactcatccaccagctggtgatgggaagaagccttcaattgctgctgttgtaggtagtatggatgcccacccaagcagatactgtgctacagtaagagttcagagaccccgacaggagatcatccaggaccttgcctccatggtccgagaacttctcattcagttttataagtcaactcggttcaaacctactcgtatcatcttctatcgggatggtgtttcagaggggcagtttaggcaggtattatattatgaactactagcaattcgagaagcctgcatcagtttggagaaagactatcaacctggaataacttacattgtagttcagaagagacatcacactcgattattttgtgctgataggactgaaagggtcggaagaagtggcaatatcccagctggaacaacagttgatacagacattacacacccatatgagtttgatttttacctctgtagccatgctggaatacagggtaccagccgtccttcacactatcatgttttatgggatgataactgctttactgcagatgaacttcagctgctaacttaccagctctgccacacctatgtgcggtgtacacgatccgtttctatacctgcaccagcgtattatgctcacctggtggcatttagagccagatatcatctcgtggacaaagaacatgacagtgctgaaggaagtcacgtttcaggacagagcaatggacgagatcctcaagctcttgccaaggctgtacagattcaccaagataccttacgcacaatgtactttgcttaaaaagttgaaggatattctctgagaggaagaactggaagatgaatcgacatacagtgtatgcttccagtggagtcagttgagtggggaatgcctccagccatacagaaaccaacactgtgtgggggccagggtctgatctatatgttgatacaaggaagatcgtttacttcatcaaggaacacagcaccattatgcaatatgaaaccagccaactgcttttttgtgcggtctcctgtaggaagtatcgcaattgtttcgttttcactttcttgtagtctaacccttttaatgcctttacctcaagttgcttggcagcacaactctttgcaaaaaaaaaaaaggtaaagaaaaagtaaatgatggttaaaaaaaaaataccgatatgaataatcaaagtgattgttcacaattatgtgtgcaaaaaaattaatgtgcattcgtgtattcttataaaagatatctgtatattttacatatatacatgtatactgcatatgcatatatatctggatctacattgacaatagatatatatgtgtctgtgtatatattttatagttcattccactgggaaactttctttcccttttattattctcccaccaccacttttatttctctctctaccttccttgccttcatcacctacattttttttccctgatgctaccagtgacattcaaatgttcatgtatctggttcatttgaatatgaagcatggcaaactagatttttatttttattttgcacaccctactccggtctcttgtctcatacacaattctgagtcctcaactcttaacattgctttcttaagaaacaaaattatttttgtttttttgtgagggtgagtggcccttcctgctctgctctgaacttacatttgccatttgtacagtgtgtacataagcagtagcaacctaaactattctttttctttagtgaatttgttaaagctgctataaatataaaaccttctcagaagttgtaactctttctctctgtaagtgatatacattctaaagccttctgtttctatgggttatacatggaagtcccttaaagcttttataaaatataaatattttaaatgattggaactgtatagggttgaggcctctgaaattgggtggagagaaagggttgtggagatctcttatttttttttttttttttttttttttttttgctagtttacttgctgcctctcataccttaatgtgatgttcatatatatatttttatatatatgtgtgtatatataaacatatatgtatgtgttttgaagtatagcttccttttctttatatttattagaatagcgctttaataattatagaatcatattggcaacatcttttatagaaatataatcatgtttattttaagaactgacaacttgtttttgctatcttttagtgcaataagcagttttaaaagaaagctgtgtctgtttgacatctctaccacagatagtgggagaaacaggcacctccataattttaaaagggcaaagtaatacagccttaatttcagaaggaaagttttgtaattttcaaatttcaagcatgtctttttaaaaatcacaatgaaaatgaagttaaatttcctaaatgagtctgacctgaatattagaaataaagttgaaaaactttaagtaatgacagtaactagcttaagatttagaagatatttaaattctttgaaaatagatcatgtttattaaagaatcatactagtgaggtgtccattttcatttactaaaatgaatcagaaaaatgtaaaatgacatttaaaaaaatttttttttgctaattcatcaccagtgtaactttccttttaaaattagggtaatggtgacagaggaagttaggtctttgatcattctatatgagttaaataactgaaatgttgggaacagttttgcagaacttttgttttattgatttcactttaagatattaataagtactataaagctgtcaaaccgagttcatcagtaaccttggattcaggggagctttgcactttgtaactcatgaaaatcgcattttaatttttttttttttgcactggttcagagtatagatattacagattgtttccagtgggcattgttgttaacctttcagaattccatctgcacatgaaaacaaatggattagctcttttagtttctctcttacttgtacccacatttattgtcgatttactgtattttgagcctaaaatctgagcccatgtcctctaacagttaggaagtcttttgtccctctgccagaaaactaacaaagtactgtattttgtatgtctattatattgaagtgtctgaaatgcaatttaaaacactgtttccaagctctttacgtaaggtattatttgtgtaatatatacatttttctcccaaccctcccccccaaaaaaaattcctgtaaaggatgtgttttttttcattgaagtttcactgaatatcaaaaattgttgaattttttttacattgaaaattcatagaacatgggcaaaagaagaaaatagtatatcctagatggtaaaaacttgattgtatatgtttcctcagtatgaataacacatcttcctttatcagtgggaattgcacagattcacatgggaaactttaggtcctaagaaagaactttagataacctttcctgatttactgctttacctaatttttagtcacttaatctcacatgcgctaaaataaagcccacaatttaaacctatttggaagggcttttacagaggaaaaaaaaaatttttttaatataaaattttatgttggaagagagttctttttagggtgctcttagagtttcaacactgctagtttaaagttggttaacttgaaagaatatgtatagtgtatttctattttgctagctaacaaattggtatatcgaacttaattacaagaaactttgtgcttagaattttaaggtaaaagactatgtggcaaatatg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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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