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2024-03-28 18:56:31, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_045520346            7563 bp    mRNA    linear   MAM 15-DEC-2021
DEFINITION  PREDICTED: Camelus bactrianus argonaute RISC catalytic component 3
            (AGO3), transcript variant X2, mRNA.
ACCESSION   XM_045520346
VERSION     XM_045520346.1
DBLINK      BioProject: PRJNA269612
KEYWORDS    RefSeq.
SOURCE      Camelus bactrianus (Bactrian camel)
  ORGANISM  Camelus bactrianus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda;
            Camelidae; Camelus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_011514983.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Camelus bactrianus Annotation
                                           Release 102
            Annotation Version          :: 102
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7563
                     /organism="Camelus bactrianus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9837"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /country="China: Inner Mongolia Autonomous Region"
                     /collection_date="04-Jun-2010"
                     /breed="Alxa"
     gene            1..7563
                     /gene="AGO3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 11 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:105072821"
     CDS             153..2594
                     /gene="AGO3"
                     /codon_start=1
                     /product="protein argonaute-3 isoform X2"
                     /protein_id="XP_045376302.1"
                     /db_xref="GeneID:105072821"
                     /translation="
MMESKVLVPECRKWWLREVVDSMVQHFKVTIFGDRRPVYDGKRSLYTANPLPVATTGVDLDVTLPGEGGKDRPFKVSIKFVSRVSWHLLHEVLTGRTLPEPLELDKPISTNPVHAVDVVLRHLPSMKYTPVGRSFFSAPEGYDHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIQFMCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYTLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYETDPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMYFA"
     misc_feature    228..512
                     /gene="AGO3"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:435368"
     misc_feature    540..692
                     /gene="AGO3"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:430160"
     misc_feature    693..1055
                     /gene="AGO3"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(849..851,894..896,936..938,948..950,1002..1004,
                     1023..1025,1029..1031)
                     /gene="AGO3"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1188..2465
                     /gene="AGO3"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1599..1601,1611..1613,1647..1658,1665..1667,
                     1689..1691,1698..1700,1710..1712,1722..1724)
                     /gene="AGO3"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(1803..1805,1809..1811,2019..2021,2433..2435)
                     /gene="AGO3"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
agaagacctggctatggcaccatgggcaaacccattaaattgctggctaactgttttcaagttgaaatcccaaagattgatgtctacctctatgaggtagatattaaaccagacaagtgtcctaggagagtgaacagtctgtgcaccagagcatgatggagtcaaaagtcttggtaccagaatgtaggaagtggtggttgagggaggtggttgactcaatggttcagcattttaaagtaactatatttggggaccgtagaccagtttatgatggaaaaagaagcctttacacagccaatccacttcctgtggccactactggggtagatttagatgttactttacctggggaaggcggaaaagatcgacctttcaaagtatcaatcaaatttgtctctcgagtgagttggcacctactacatgaagtactgacaggacggaccttaccggagccactggaattagacaagccaatcagcactaatcctgtccatgccgttgatgtggtgctacgacatctgccctccatgaaatatacacctgtgggacgttcctttttctcagctccagaaggatatgaccaccctctgggagggggcagggaagtttggttcggattccatcaatccgttcggccggccatgtggaaaatgatgcttaatattgatgtttctgccactgccttctacaaagcacaacctgtaattcagttcatgtgtgaagttcttgacattcataatattgatgagcaaccgagacctctgactgattctcatcgggtaaaattcaccaaagagataaaaggtctgaaggttgaagtgactcattgtggaacaatgagacggaaataccgtgtttgtaatgtaacaagaaggcctgccagtcatcaaacctttcctttacagttagaaaatggccaaactgtggagagaacagtagcacagtatttcagagaaaagtatactcttcagctgaagtacccacaccttccgtgtctacaagtggggcaggaacagaaacatacctatctgccactagaagtctgcaatattgtggcagggcaacgatgtatcaagaagctaacagacaatcagacctccacaatgatcaaagcaacagcaagatctgcgccagatagacaagaggaaattagcagattggtaagaagtgcaaattatgaaacagatccatttgttcaggagtttcaatttaaagttcgggatgaaatggcccatgtaaccggacgtgtacttccagcgcctatgctccagtatggaggccggaatcggacagtagcaacaccaagccacggagtatgggacatgcgagggaaacaattccacacaggagttgaaatcaaaatgtgggctatagcttgttttgccacacagaggcagtgcagagaagaaatattgaagggtttcacggaccagctgcgtaagatttctaaagatgcagggatgcctatccagggccagccttgcttctgcaagtatgcgcagggggcagacagtgtggagcccatgttccggcatctcaagaacacttactctgggctgcagctcattattgtcatcctgccagggaagacgccagtgtatgcggaggtgaaacgtgtcggagatacacttttgggtatggctacgcagtgtgttcaagtcaagaatgtaataaaaacatcccctcaaacgctctcaaacctgtgcctaaagataaatgttaaactcggagggatcaataatattcttgtacctcatcaaagaccatctgtgttccagcaaccagtgatctttttgggagcagacgtcactcatccaccagctggtgatgggaagaagccttcaattgctgctgttgtaggtagtatggatgcccacccaagcagatactgtgctacagtaagagttcagagaccccgacaggagatcatccaggaccttgcctccatggtccgagaacttctcattcagttttataagtcaactcggttcaaacctactcgtatcatcttctatcgggatggtgtttcagaggggcagtttaggcaggtattatattatgaactactagcaattcgagaagcctgcatcagtttggagaaagactatcaacctggaataacttacattgtagttcagaagagacatcacactcgattattttgtgctgataggactgaaagggtcggaagaagtggcaatatcccagctggaacaacagttgatacagacattacacacccatatgagtttgatttttacctctgtagccatgctggaatacagggtaccagccgtccttcacactatcatgttttatgggatgataactgctttactgcagatgaacttcagctgctaacttaccagctctgccacacctatgtgcggtgtacacgatccgtttctatacctgcaccagcgtattatgctcacctggtggcatttagagccagatatcatctcgtggacaaagaacatgacagtgctgaaggaagtcacgtttcaggacagagcaatggacgagatcctcaagctcttgccaaggctgtacagattcaccaagataccttacgcacaatgtactttgcttaaaaagttgaaggatattctctgagaggaagaactggaagatgaatcgacatacagtgtatgcttccagtggagtcagttgagtggggaatgcctccagccatacagaaaccaacactgtgtgggggccagggtctgatctatatgttgatacaaggaagatcgtttacttcatcaaggaacacagcaccattatgcaatatgaaaccagccaactgcttttttgtgcggtctcctgtaggaagtatcgcaattgtttcgttttcactttcttgtagtctaacccttttaatgcctttacctcaagttgcttggcagcacaactctttgcaaaaaaaaaaaaggtaaagaaaaagtaaatgatggttaaaaaaaaaataccgatatgaataatcaaagtgattgttcacaattatgtgtgcaaaaaaattaatgtgcattcgtgtattcttataaaagatatctgtatattttacatatatacatgtatactgcatatgcatatatatctggatctacattgacaatagatatatatgtgtctgtgtatatattttatagttcattccactgggaaactttctttcccttttattattctcccaccaccacttttatttctctctctaccttccttgccttcatcacctacattttttttccctgatgctaccagtgacattcaaatgttcatgtatctggttcatttgaatatgaagcatggcaaactagatttttatttttattttgcacaccctactccggtctcttgtctcatacacaattctgagtcctcaactcttaacattgctttcttaagaaacaaaattatttttgtttttttgtgagggtgagtggcccttcctgctctgctctgaacttacatttgccatttgtacagtgtgtacataagcagtagcaacctaaactattctttttctttagtgaatttgttaaagctgctataaatataaaaccttctcagaagttgtaactctttctctctgtaagtgatatacattctaaagccttctgtttctatgggttatacatggaagtcccttaaagcttttataaaatataaatattttaaatgattggaactgtatagggttgaggcctctgaaattgggtggagagaaagggttgtggagatctcttatttttttttttttttttttttttttttttgctagtttacttgctgcctctcataccttaatgtgatgttcatatatatatttttatatatatgtgtgtatatataaacatatatgtatgtgttttgaagtatagcttccttttctttatatttattagaatagcgctttaataattatagaatcatattggcaacatcttttatagaaatataatcatgtttattttaagaactgacaacttgtttttgctatcttttagtgcaataagcagttttaaaagaaagctgtgtctgtttgacatctctaccacagatagtgggagaaacaggcacctccataattttaaaagggcaaagtaatacagccttaatttcagaaggaaagttttgtaattttcaaatttcaagcatgtctttttaaaaatcacaatgaaaatgaagttaaatttcctaaatgagtctgacctgaatattagaaataaagttgaaaaactttaagtaatgacagtaactagcttaagatttagaagatatttaaattctttgaaaatagatcatgtttattaaagaatcatactagtgaggtgtccattttcatttactaaaatgaatcagaaaaatgtaaaatgacatttaaaaaaatttttttttgctaattcatcaccagtgtaactttccttttaaaattagggtaatggtgacagaggaagttaggtctttgatcattctatatgagttaaataactgaaatgttgggaacagttttgcagaacttttgttttattgatttcactttaagatattaataagtactataaagctgtcaaaccgagttcatcagtaaccttggattcaggggagctttgcactttgtaactcatgaaaatcgcattttaatttttttttttttgcactggttcagagtatagatattacagattgtttccagtgggcattgttgttaacctttcagaattccatctgcacatgaaaacaaatggattagctcttttagtttctctcttacttgtacccacatttattgtcgatttactgtattttgagcctaaaatctgagcccatgtcctctaacagttaggaagtcttttgtccctctgccagaaaactaacaaagtactgtattttgtatgtctattatattgaagtgtctgaaatgcaatttaaaacactgtttccaagctctttacgtaaggtattatttgtgtaatatatacatttttctcccaaccctcccccccaaaaaaaattcctgtaaaggatgtgttttttttcattgaagtttcactgaatatcaaaaattgttgaattttttttacattgaaaattcatagaacatgggcaaaagaagaaaatagtatatcctagatggtaaaaacttgattgtatatgtttcctcagtatgaataacacatcttcctttatcagtgggaattgcacagattcacatgggaaactttaggtcctaagaaagaactttagataacctttcctgatttactgctttacctaatttttagtcacttaatctcacatgcgctaaaataaagcccacaatttaaacctatttggaagggcttttacagaggaaaaaaaaaatttttttaatataaaattttatgttggaagagagttctttttagggtgctcttagagtttcaacactgctagtttaaagttggttaacttgaaagaatatgtatagtgtatttctattttgctagctaacaaattggtatatcgaacttaattacaagaaactttgtgcttagaattttaaggtaaaagactatgtggcaaatatgttttgaaatttgttttaattgttactacacttctggtgtagaattcctgatcatttttattaaaaaaaaaaaaagttttgagtttaatggtcatgaaattcaacagtgacctgtctgttcctgcctttgctcactatacaatgaatgtctgttgttttctatgatatatgagtgacacggtgactttaaaatgtcagtcccggcaactggtataattgattttcatgtaaagaaaaattgggagtttaatgtatattctggatggcaaatgtgtccgtgtaaagggctgatacatattttacattacagtatcaagttactggcattgaggaccatgcatttataatactgtagctgctatatttatttaatgaagtggagtctgacagttactgcactaaacagtaaggagatgagcaggattcaaggctgtgttagacccttctttctttccttttcttttcttttctttttttttttccctaaaaagattaagaacataaaatatcaaggtaacaaagggtgctgccattttagtttcaatttaacatcaggatactctttttttggttttagaaatgtggattttgactttagcagttttgaaaagggtacctcaacctcctcagtactggtttttggcatatttttacggaagtacagatgccctttatttttttcttagtgttttaccttttaacaagtttctcagaaaaagtattcttctatggaaatcttcctgtttataacctattaatttatttatcttcctagaagagagtctagctagaattctagtgggaatgtactaggtttttcagaaggcacctgataaagattcatctctaccttctagcacagagactctagccttctaaaaacctatactagttttccaaactaggttctctgatgacccaccactgcctaaagtttacttgtatattctgtaaggattttagtatgacagacctcatgacaggcttagtcacagcagacttaaggtatgtctagggaaataaaagctgagctgccattcagtagaaacggctagcagaggatttcaatgtttaaggaaaaggtgaacactcagagtgccagtaatagatctgaagtaattagatggattatagaccaggaattagagatactattcaaagagtttggtgggtgtttgattcagaggccaacatgaatttgctgtgagtggtggtttttatgacgcccatgaagctagccacttggattcagccagaatattttgtagtcttgctagttgaaacttgatagtaatgttttgccaagaagcttaactgaaaactcagtgatttttattcagtatcattagacttgagttcaatatttatttaactcatcctcttagatattctcctattgaaaacttttaaagacacaatatccctaacaggaacttgctgcctaaataatcttttaggagttatcagtcaagctgcaaaaagacatcactggcctggcaactttattttatttatttttattgtagtatagttgatttacagtattgtgtttggcctggcatctctattttggcttttttatccatatgaattttaatccttttcattcttttttgaggattcatggttgtctcaaagcttcaataataatagttgggagagcttacatcaagtgaggcctttgtgagtgacagtataaccctgactctaaagtctgtctttattttcctttttctctcccatttggtcatataaagcactttgtgattctatagggagtcaaaaaataagccaagaataatgtgtaaaatcagaacataaatgtgaaagtgagaattttctccaaaaaactcatttctttttaaattcctgattatactaagaacactcttgatcagtggcaatgttagaaatgatattgtgattaatgaaacttaagctgactcccaggagaaaaaaaatctcaacctctcttcccctctcctgac
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]