2024-03-29 13:50:38, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_045476701 8183 bp mRNA linear MAM 17-DEC-2021 DEFINITION PREDICTED: Leopardus geoffroyi argonaute RISC component 1 (AGO1), transcript variant X5, mRNA. ACCESSION XM_045476701 VERSION XM_045476701.1 DBLINK BioProject: PRJNA786922 KEYWORDS RefSeq. SOURCE Leopardus geoffroyi (Geoffroy's cat) ORGANISM Leopardus geoffroyi Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Leopardus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_059328) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Leopardus geoffroyi Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8183 /organism="Leopardus geoffroyi" /mol_type="mRNA" /isolate="Oge1" /db_xref="taxon:46844" /chromosome="C1" /sex="male" /cell_type="Fibroblast" /tissue_type="Fibroblast" /dev_stage="adult" gene 1..8183 /gene="AGO1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns" /db_xref="GeneID:123597598" CDS 141..2300 /gene="AGO1" /codon_start=1 /product="protein argonaute-1 isoform X5" /protein_id="XP_045332657.1" /db_xref="GeneID:123597598" /translation="
MPHRVGACARGTSSLPVPARYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRVSRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVSDTLQLLLKVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
misc_feature 207..359 /gene="AGO1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 360..722 /gene="AGO1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(516..518,561..563,603..605,615..617,669..671, 690..692,696..698) /gene="AGO1" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 855..2171 /gene="AGO1" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1275..1277,1287..1289,1323..1334,1341..1343, 1365..1367,1374..1376,1386..1388,1398..1400) /gene="AGO1" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1479..1481,1485..1487,1725..1727,2139..2141) /gene="AGO1" /note="active site" /db_xref="CDD:240015" polyA_site 8183 /gene="AGO1" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
gctagctattgttagctggcgcatgctccatgaggccctggttagtggccagatccctgttcccttggagtctgtgcaagccctggatgtggccatgaggcacctggcatccatgaggccagggctcctccgtgcccaggatgcctcacagggtgggggcctgtgcccgagggaccagttctctgcctgtccctgccaggtacacccccgtgggccgctccttcttctcaccgcctgagggctactaccacccgctggggggtgggcgcgaggtctggttcggctttcaccagtctgtgcgccctgccatgtggaagatgatgctcaacattgacgtctcagccactgccttctataaggcgcagccagtgattgagttcatgtgtgaggtgctggacatcaggaacatagatgagcagcccaaacccctcacggactctcagcgtgtgcgcttcaccaaggagatcaaaggtctgaaggtggaagtgacccactgtggacagatgaagaggaaataccgtgtgtgtaatgttacccgccgccctgccagccatcagacgtttcccttgcagttggagagtggacagactgtggagtgcacagtggcacagtatttcaagcagaaatataaccttcagctcaagtatccccacctgccctgcctgcaagttggccaggaacaaaagcatacctacctgcccctagaggtctgtaacattgtggctgggcagcgctgcattaagaagttgaccgacaaccagacttcgaccatgataaaggctacagctaggtcggccccagacagacaggaggagattagccgcctgatgaagaatgccagctacaatctagatccctacatccaggaatttgggatcaaagtgaaggatgacatgacggaggtgacagggcgagtgctgccggcgcccatcttgcagtacggcggccgggtgagcaggaaccgggccattgccacacctaatcagggtgtctgggacatgcggggaaaacagttctacaatgggattgagatcaaagtctgggccatcgcctgcttcgcaccccaaaagcagtgtcgagaagaggtgctcaagaacttcacagaccagctgcggaagatttccaaggatgcagggatgcccatccagggccagccttgcttctgcaaatatgcgcagggggcagacagcgtggagcccatgttccggcatctcaagaacacctactcagggctgcagctcattatcgtcatcctgccagggaagacgccagtgtatgctgaagtgaaacgtgttggagatacactcttgggaatggctacacagtgtgtgcaagtgaagaatgtggtcaagacctcgcctcagaccctgtccaacctctgcctgaagatcaatgtcaaacttggtggcattaacaacatcctagtcccacaccagcgctctgccgtctttcaacagccagtgatattcctgggagcagatgttacacaccccccagcaggggatgggaaaaaaccttctatcacagcagtgagtgatactctccagcttcttcttaaggtggtaggcagtatggatgcccaccccagccgttactgtgctactgtgcgggtgcagcgaccccggcaagagatcattgaagacttatcctacatggtgcgtgagctgctcatccagttctacaagtccacccgtttcaagcctacccgcattatcttctaccgagatggggttcctgaaggccagctcccccagatcctccactatgagctgctggccattcgtgatgcctgcatcaaactggaaaaggactaccagcctgggatcacttatattgtggtgcagaaacgccatcacacccgccttttttgtgctgacaagaatgagcgaattgggaagagtggtaacatcccagctgggacaactgtggacaccaacatcacccacccatttgagtttgacttctatctttgcagccacgcaggcatccagggtaccagccgaccatcccattactatgtcctttgggatgacaaccgtttcacagcggacgagctccagatcttgacataccagctgtgccacacttatgtacgatgcacacgctccgtctctatcccagcacctgcctactatgcccgtctggtggctttccgggcacgataccacctagtggacaaggagcatgacagtggagaggggagccacatatcggggcagagcaatgggcgggacccccaggccctggccaaagccgtgcaggttcaccaggatactctgcgcaccatgtacttcgcttgaaggcagaacgctgttacctcactggatagaagaaagctttccaagccccaagagctgtgccgcccaaatccagaggaagcaaggaggaggaggagggagggtagggaggagctcagaaggccttgtttccttctttctacgaagggggcgaaagggtgggggacagggccagtaagccagaccaccagccagaaatttctgatgtccacctcatgacccccacccctcacccatcttgtcacatctggccctgaccccactggaccaagaggggcagcactggtgcccgccatacacacaggtgtctcttgtgactcacagtgctaaagactcatgcctgacagcttggtaaggtcggctctgcagccccgcggacaaaagctggtaggtttgggtttgatactttagatgggagagtgaggggcttaaaaaagtgggtgggaggagggaaggattttttaggagccttaatcagaaaaggtctagatttgtttaagaggaaaaacgaaaccagacccagatcaatattttagaatactagatgttttaatgggttgaaaatccagtttgtaggaagatttttaatgctaatggttttggttgaccctcccccagctgccaccccctttccattattcctttctctccactttttctaccccaccttacacctcctccctgacagacatccagcccctagtaagacttaaggcactatggcacttagctctgaagtgacacgaccctgtcttccttccgcctactggtgggtaaccagtgccttccctgtaacggtaatgctgcagaactgcaaccttttgtacctttctttgggggggatagggtgggggtgggagaggaggtaggtggggaagaaatacccttaacccaacaagcctccaaccagagcgccagctattttgcattcgaaggaattgacttccatattcattaagcttttaaaaagaccacaacctcaagatggttaaaatccattgacatttgcactttcagacatgacaagtcttggagctgctgagatgactggcccctggcctttccatttacacctcctgttcttcctgtccccccggtttccccacctgcctggatctggagttactttcatagcatttctcactcttggcttcttttttcccctgatggtcaagttgcttatgtttcaatatttcttaactggggtgtcttataacaaatgatctttaggtctaaaataagaaaaaaagagcaaaaactaaatgttatttttataccataacttgagtctattgccaaaatctggaaatccctcccatgcccaataagtttacatcccagaaacattgagccatcagaaggaactatgtacctgacttgttctttggcctggctaggtaggggatggttatctccctaaggtggggctcaggctccatccttcccctgtgcagataatatctttttcttgctataggatccctcttctgcactgccctgcactctttcctgcaagttgcatctttcctttctctggtcctctgacactttggctcatcacagattccagtgtgtcctgtggacaggctgggggattttgctgctccctattgcttctgtttacacaaatgaatttttcccggtttcccactagggcatgtgagtgggtggcgtgggcctttgttttgttttgttttttgttttttgtctccctggatagaggttgggtttggctgtcttgcagaactggaaaagtagggggtttctagcttggtgcctactggccttgaggcaaggccccctctttccttaactgttaattttttcctgtcccactgcttgggatgaggagttgcagcttcagtgtggaagttcctctttaaggagcctgagtttgggtttaccccaatctggtgatgaagccatgacactttagacctagctcaggcttggaggctggtctggatccgggcctgtgcgcttagagctaccatttcccctccccagcagcccttgtacagacccagatttgctatgcaaaacagtctatcccaggttctgttctggttggctactttgttcagcaacttcacaaaacgtagcacaaacattgattatggagaaggcatcaggactgttgagtaactcctcctttacttctttcctactggctacagtatgggatgccccatgggcacagcccagctgaagaacagaatggagggctctgggaggaggcagctcactggagagcctacattccttacacaagtgcctaaagagagtgatgccaacactccatctgccctgtccatcgccttcatatactgtctacttcgtgttcagtcaccctttggggaggggagctctcttgggacaatgggctctgcatgttctcttcttgggtgcattttggggctgggatcagggcactgttcctggagggtccagtcattcaccagcatttgcaaatatccatagggagctggtggtagccacctactctcagcaacaagtttatgttctctcctttttctctctttgcctcactctctccatttgggttttgagctggggcttgcaatgcattttttagccctttggcattgcacatgctgttcaagaaataagcaagagaagcaatttgggcgatggcaagaaaataacctcttgctctgaatttttttttttttttaatctttgagacttgaaaaatactttgaccttgatgattattcttgtttgaaagatggtgcatgcagattgagaagtggtgttagcaacaagctttggctttcttggatttggtttaagtggtgcttcttacttgtgctctgaggaagtgttgggggaccccagcctcatcctcttggacaggtctcttgctcccttcgttttactcttttgcctctcttttctacttttctctttccttgggatccttttccctttttcaattcactaagcttgtttgctggcctgcctgcctatgtgatgatgaattctctgcatggctacgataatcccactgttagctagcacagtcaggcttagcttcttggctacagacaaccaacaatctgttccccaagcccagtaatgtcctctctgggctggactgccatcaaagttactcagcaggcatgcctacctggcatgaaatcagggggcttctgataacttccacacgtgtccactccttggagtaggtttctctcattgctttttctggatctggttccatttctctctacatgggacctcccttttctgaagacatcctagagttgagctacttggtttccagggttggagggttagggggatggacataggggaagaagagagtgatgggaagagaatggagagaatttggataaaagatgggaaagagcactgttcgttgatcatttttctagtccagtctgacccattgggggttgaggtgctactgctgaactcaggataagcctggagttgttgttgttcatgggaacttaggcttagaataatgttgaagaagaaagtatctaaaagcgtgaaacctccctaaaaagctcctggttcccatctactagatagctcctctgtggcctcctgtttggctaaacaacaatgttcttggatagtttggggtgtttttcttttttatttttttgtccagaattcagtaaatgaggctgacactcaggatgggcatccaaggggacattttgacttcttagctggcccatgggttatctgtctacaaggctggcgaggcagtgttttaaacctggcgtcatgtgtaacaaagaagaatggaaagttccttccctttcagggtggaaagtcctctcaaactagccaaaatgcagttttggaaactacattgggggaagttattttttatatttactgggcctaggccaatctaggatggtagctgggatgccttccttcttaaagtctgatcatggcagggatatgcagggcactctttcctatttagccttctaagcagattggggagaagggattctctggttttctcttccctccccccaccccctccttttattaggacttgccttctccctgggcagggagagaggctaggttggtgctctccccttactctattcctactgacttagaacctccggctgctgtttgggagcctaagaaagggagtggaggtaatgggctcaaaacaaaacagaataaggtggggagggcaaagttccttctttaaaaaggaaaataggaaactctccaaggattgtgcaagtaaagacaatgtgtcgaatgcactgagtcccctggtgtagtagcaataaggaataatgaaatgactttcctgtgcacagtccaacctgattggtgtgtgatgttgcacttagcagccatctggtgggcatgtgtgactactctgggtttcactttagtttctaaactttttatccctctcaagtccagcatggatggggaaatgtccctgaagccccacagctgtgtacttgtttgcatttgtttccctttgagacttgtgtttgtgtcctgctttgagctgtaccttgtccagtccattgtaaaattatcccagcagctgtaatgtacagttccttctaaagcaagcaacagcagcagcacaattctgtgttttataaagacaacagtggcttctatttctaaagtgcggtctctctctctcttttcccccacccccattagcaaagcaaactgttgggattaattatatgtgatagattttaggttagagtaatagattgttataagagcagaaccattacttctagaggaaaatggataaaaaacaccagagtattgaaactgcagattgtatgtaatcatacgtcacaaggcctccgtttattcttcattcaacaaaccatgtaaagcactgtgtccagcagtgttgttaggggagatggcaaacataattcaataaggaggaaaaccatgtctctctccttaaggagcttaaagtttggtggtggtgggtgggtatgagtggccaaatggttccctggtacaggagagaaatgatgaaggactgaaacaaggctataaggctatacaccagtgaagataggaaagggaagatttttgagagacactcagaaagaattaataggactcgatagatggtgaaagaggaatagacactaatgctcaggtttctgcttgagcaatgagtatatcgggacattcttctaaccaagactaggggagaagggagactagacggaaggtggtgaattttgtgaagacagttagccttgtatagacggagtttggaggttcccatgaggcaacaattttaaggtttccagtaaacacttatattttggtgctcagggaagactataaaactgtagttgtagataatgggattcatactcctatatatggtaggtaaagccataggaataaacaaaatagcttagaaaaagagcgagaaaaacatagtatcccgttctggaaacacaatttaaaggatgaagacaggaagctgaacctaagaagacagtcaaatcactagtagataccttgtatattttttacttaatgaggtaggagaaaaaagagaatggaataggatccaagaagggcgtaatcaacaacatgaactgctgcagtgaggaggaggtattttttttctactcagtttaccatcctccaccccatcttctctgggatcttataactatatggtcattcagtatttcttgaaaatgagcattgaaaaaacctaatttaaataaagctaagtctaggacttcgagttgttcatcacaaccaccacttccacctccagcttcctcctgtcctcaggagttacttgtaaaagaataaaataaacaaacctaattttgttcctaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]