2024-05-04 03:58:34, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_045389222 2468 bp mRNA linear PRI 08-DEC-2021 DEFINITION PREDICTED: Macaca fascicularis claudin 17 (CLDN17), mRNA. ACCESSION XM_045389222 VERSION XM_045389222.1 DBLINK BioProject: PRJNA690070 KEYWORDS RefSeq. SOURCE Macaca fascicularis (crab-eating macaque) ORGANISM Macaca fascicularis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052257) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Macaca fascicularis Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2468 /organism="Macaca fascicularis" /mol_type="mRNA" /isolate="CE1976F" /db_xref="taxon:9541" /chromosome="3" gene 1..2468 /gene="CLDN17" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:102129924" misc_feature 1 /gene="CLDN17" /experiment="COORDINATES: cap analysis [ECO:0007248]" /note="transcription start site" CDS 218..892 /gene="CLDN17" /codon_start=1 /product="claudin-17" /protein_id="XP_045245157.1" /db_xref="GeneID:102129924" /translation="
MAFYPLQIAGLVLGFLGMVGTLATTLLPQWRVSAFVGSNIIVFERLWEGLWMNCIRQARARLQCKFYSSLLALPPVLETARALMCVAVALSLIALLIGICGMKQVQCTGSNERAKAYLLGTSGVLFILTGIFVLIPVSWTANVIIRDFYNPAVHIGQKRELGAALFLGWASAAVLFIGGGLLCGFCCCNRKKQRYRYPVPGHCVPHTDKRRNMKMPSNTSTSYV"
misc_feature 233..763 /gene="CLDN17" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN
gaaatgaatgtgtatgaaaaaaggcaacatgcatttacaacaggtacttctagttaggccaagttcagtcacagccactgatttggactaaaatgatatgggcagcagccaaggagaacatcatcaaagacttctctagactcaagagccttccacgttctacatcttgagcatcttctaccactccgaattggactagtcttcaaagtaaaaggcaatggcattttatcccttgcaaattgctgggctggttcttgggttccttggcatggtggggactcttgccacgacgcttctgcctcagtggagagtatcagcttttgttggcagcaacattattgtctttgagaggctctgggaagggctctggatgaactgcatccgacaagccagggcccggttgcaatgcaagttctatagttcattgttggctcttccgcctgtcctggaaacagcccgggcactcatgtgtgtggctgttgctctctccttgatcgccctacttattggcatctgtggcatgaagcaggtccagtgcacgggctctaatgagagggccaaagcatatcttctgggaacttcaggagtcctcttcatcctgacgggcatcttcgttctgattccggtgagctggacagccaatgtaatcatcagagatttctacaacccagctgtccacataggtcagaaacgagagctgggagcagcacttttccttggctgggcaagcgctgctgtcctcttcattggaggcggtctgctttgtggattttgctgctgcaacagaaagaagcaaaggtacagatatccagtgcctggccactgtgtgccacacacagataagcgaagaaacatgaaaatgcctagtaatacctccaccagttatgtctaatgcctgcttttggctccaagtgtggactatggtcaatgtttgttataaagtcctgctagaaactgtaagtatgtgaggcaggagaacttgctttatgtctagatttaaattgatatgaaagtttcaatttgttactggtaggaaaacttggacattctgacttcaggtgtattaaatgcatttactattgttggactcaatcgctgtttcaatgttcatattctaaatgtaagtatacccataatcattatcaagtgcacaatgatggactactagtttttgaccatcatattttatctgataagaatcaaaatttgaaatcgatattctataacaataaaacatatacctattctaaaatgtaagctattatttttcctctacattgtttcttgtactacacactaacaactaaatgatgacctttttcaaaagattatcatggaaaattgtagatatcaaacaataatttttagttgaaaatgtcaaaacatgaaaatgtccatctaatgaaagactttgttcctttaggaactcacacaattacaattagacactttagtgaaaagggagctctgatttatcttaggacaattaagaagacagattttaaggtctctaatttatacagttaaacttgcctagaatcactgtttaaaggaaaataatttataaatgaaaaataatatttttcatagcctatcatctgtacttcaagcaaacagaagcatctatcttgataagacacatcaatggaaggctattaacactcaattcttatctagaggttatacggtcccaattagagaattgcagttggggcattgaagggaatggtttctattctttgttttattctttagtcattgcacaggtacaaacatgctaagcaattcgaagaattaaggttatgattcagacaagtagtcaggctaagttaaacaccttttttgtattctctactaaacaaataggtatggtgaaaatatttttgttttgcttgaattacatgcacaattttctcaatacttcatttcccatgtgtacatatcaatatcagggttaaaagtgtggtggatcatgtggggtaagagtgagtggggagtgtttatgaggcaagaccacctgtatgggttgcttctgaatagcttttacatcttgtgaatcaatcaatttttgtatgttcagttttaactcttcaaatattgtgcttattttgtaataaaaatgtatttaattttgagtatataattgcaatgagaagcctgaatttgctcaccaaatatttattgcatcttcatccttattataatgaaataaaatagattacaatgatgttgatatatttagctgtggggtcaattcgaataaatttctgtcctcacaagatcgcctagtaactctgaaacattaaatcagggataactcaagcctggatgttaatatccaaccttcactccattctacaaaccaccagcaagatgtcagtaggtgaagcccctggtaatataaaactgtatttaaaacactggtaatattaaatgataagatcacacaagtataaatatcttcgaag
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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