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2024-04-19 12:46:14, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_044862396            3165 bp    mRNA    linear   PLN 23-NOV-2021
DEFINITION  Hirsutella rhossiliensis NRDE-2, necessary for RNA interference
            domain-containing protein (HRG_03925), partial mRNA.
ACCESSION   XM_044862396
VERSION     XM_044862396.1
DBLINK      BioProject: PRJNA774200
            BioSample: SAMN20605485
KEYWORDS    RefSeq.
SOURCE      Hirsutella rhossiliensis
  ORGANISM  Hirsutella rhossiliensis
            Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina;
            Sordariomycetes; Hypocreomycetidae; Hypocreales;
            Ophiocordycipitaceae; Hirsutella.
REFERENCE   1  (bases 1 to 3165)
  AUTHORS   Lin,R., Jiao,Y., Sun,X., Ling,J., Xie,B. and Cheng,X.
  TITLE     A high-quality genome of the endoparasitic fungus Hirsutella
            rhossiliensis with a comparison of Hirsutella genomes reveals
            transposable elements contributing to genome size variation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3165)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2021) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 3165)
  AUTHORS   Lin,R., Jiao,Y., Sun,X., Ling,J., Xie,B. and Cheng,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2021) Department of Plant Protection, Institute
            of Vegetables and Flowers, Chinese Academy of Agricultural
            Sciences, No. 12 Zhongguancun South Street, Haidian District,
            Beijing 100081, China
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NW_025408669).
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..3165
                     /organism="Hirsutella rhossiliensis"
                     /mol_type="mRNA"
                     /strain="HR02"
                     /db_xref="taxon:111463"
                     /chromosome="Unknown"
     gene            <1..>3165
                     /locus_tag="HRG_03925"
                     /db_xref="GeneID:68353054"
     CDS             1..3165
                     /locus_tag="HRG_03925"
                     /codon_start=1
                     /product="NRDE-2, necessary for RNA interference
                     domain-containing protein"
                     /protein_id="XP_044723422.1"
                     /db_xref="GeneID:68353054"
                     /translation="
MAAGDDDDGKLSVPKFSSFKPKGSIPSADAQSGRPKAEPREKEERRHRSSRQDYRSQHRHHNRHRRERPHREEEHPDSRDREQTPRRREEPKHLPDRGAVSSVPGLFVIDKKGDPLIRKYGLERSKVPSYYRLRGGRVLGTNGRLFLHHDGPREEFSLLFPGEKKPGSRDTGGLRSRDWQKRDPVKLRARRGKSPEDVGEGYLSLVNPKKRKRLHKNSDSSDAENQPSWRSIEGKAKAVRDVNSDAQESEGSSSESGVSDHDNPLKWKSIQLNRQVKDHPDDIEAWLELADHQDALLREGETIDDRAAENTAHSFTEIKVHLLESALTHASRPEDRQRVLVALMREGLKVWDKNVAAKKWSRLSDDELHSFELWKTHLDYSMSSIATFQYEDIKKMILKRLHQVVSRATKFFRDAGYKELAVAAWQGLLELNLFKPENAQSQSETLAAFEKFWEEESPRIGEAGAQGWRHRVESGGFEDAPWAVADKEPAETRLRDPYQAWAAAERARGNKASLPARTMDADTDDDPFRVVMYSDIEPWLFVIPRAGLPHATPQLIDAFLLSCGLPLALRSNDWLETAYHSQFLTGTSTDMRPQPAWDEAECQEASQRRPPSFSNGNCCARMSPELLFSRSSWFQYFDVAGKEHAIDLSWAETALKQLVHSTCISDLALYYLGLCFARKPDLIKKRAKALLTRYPTDVRLYNAYALAEFANGNVEIASMVLTSALESPELSAASTGFLLLKTWSWIELESGDKKMATKRLCACVDESLRKPKLGQDGLSPATILKARQAFTSNAQQCLYEGQWETASSHAECLALLSYLTGEGASEPISAGQGNISAAMDVVESMSKEMRLHECGNGASELLFQWASRMLYSHAAKGPFRRVYVREQLARFIEGFPRNTILLNLFGWADATIRVVDETRQLLYDKVLVKKHDSVSSRVFAIQHELGSGNANNTRAAFEHAICSEVCKHNVMLWVWYAGFCQSQKQLQALAKRVFYRALAHCPWSKEVMMEAFVTLVRGLEPDELRSVYETMTSKGLRIHVDLDEFLERTSMGAT"
     misc_feature    811..1692
                     /locus_tag="HRG_03925"
                     /note="necessary for RNA interference; Region: NRDE-2;
                     pfam08424"
                     /db_xref="CDD:429988"
ORIGIN      
atggctgccggagacgacgatgacgggaagctgagcgtgcccaagttctcttctttcaagccaaaggggtcgattccaagcgcagatgctcagagcgggagacccaaagctgagccaagggaaaaggaggagcgtcgacatcgatccagcaggcaggattaccgttcgcaacatcggcaccataaccgtcatcgacgggagagaccgcatcgggaagaggagcatcccgactcccgagaccgcgagcaaacgccccgtcgtagggaagagcccaagcacctgcccgacagaggcgctgtatcttctgtccctggcctcttcgtcatcgataagaaaggcgatccgctcattagaaaatatgggctggagcggtccaaggtaccgtcatactatcgccttcgtggcggcagggttctgggcacaaatggacgtctcttcctgcaccacgacggaccaagagaggaattcagcctgctgtttcccggggaaaagaagcctggctcccgcgacactggtggcttaaggtcgagagactggcagaagcgtgatcctgtcaagctacgggcgaggagagggaaatcacctgaagacgtcggagaaggctacctgtctttggtgaatccaaagaaacgcaagagacttcacaaaaacagcgactcgtccgacgcagagaatcagccgtcgtggaggtcgattgaaggcaaagcgaaagcagtccgagacgtcaacagtgatgcgcaggagagcgagggctcgtcgagcgagtccggtgtttcggaccatgataatcccctgaaatggaaatccatccagctcaacagacaggtcaaagatcatccagacgacattgaagcctggctggagctggccgaccaccaggatgctttgctgcgggagggagagacgattgacgacagagccgccgagaacacggcacacagctttaccgagatcaaagtgcacctgctcgagtcggcactcacccacgcgtcacgccccgaagatcgccagagggtcctggtggctctcatgcgcgaaggtctcaaggtctgggacaaaaacgttgcggcaaaaaaatggtcccgactttccgacgacgagcttcacagttttgagttgtggaagacgcatctggactattccatgtcgagcatcgccacatttcaatacgaagatatcaagaagatgatactcaagcggcttcatcaggttgtgtcgcgagcgacgaagttcttccgcgatgccgggtacaaagagctcgccgtggcggcatggcaaggccttttggagctcaatttgttcaaaccggagaacgcgcagagccagagtgagacgctggccgcgtttgaaaagttttgggaggaagagagcccgagaatcggagaggcaggtgctcaaggttggagacaccgcgtcgagagcggtggattcgaagacgcgccctgggccgtggcggacaaagagcccgcagagacgcgtttgcgagatccataccaagcatgggcagcagccgagcgcgctcgagggaacaaggcttcgttgccagcgagaaccatggacgctgacaccgacgatgatcctttcagagtcgtgatgtactcggacattgaaccatggttattcgtcattccccgggctggattaccgcatgcgactccgcagctcattgatgcctttttgctatcctgcgggcttccgcttgcactcagatccaacgactggctggagacggcgtaccacagccagttcctgacggggaccagcactgatatgcgcccacagcccgcctgggacgaggcagaatgtcaggaagcttcgcagagaagaccgccttcgttcagcaatggaaactgctgcgcaaggatgtctcccgagttgcttttcagcaggagcagctggttccagtactttgacgtggccggcaaggaacacgctattgacttgtcttgggcggagacggcgttgaagcagctcgtccactcgacctgtatttcggaccttgccctgtactatctggggctctgctttgccaggaagcccgatctcatcaagaaacgagcgaaggctctcctgacgagatatcctaccgacgtgcggctctataatgcctatgctttggccgagtttgccaacggcaacgtcgagattgcgagcatggtgctaacatccgcactcgaatcgccagaactgtctgcggcatcaacgggatttctcctgctcaagacatggagctggatagagctggaaagtggtgacaagaagatggcaacgaagcgtttgtgtgcctgtgtcgatgagtccttgcgcaagcccaaactgggacaggatggtctgtcgcccgcgacgattctcaaggcccgtcaagcctttacgtccaatgcccagcagtgcctgtacgaagggcaatgggaaaccgccagcagccacgctgagtgtttggcgctcttgtcctatctaacaggcgaaggggcgagtgagccaatatcggcaggccaaggcaatatctcggctgccatggatgtcgtcgaatcgatgtcaaaggagatgcgattgcacgaatgcggaaacggtgccagcgagctgcttttccagtgggcttcgagaatgctttactctcatgctgccaaagggccatttcgaagagtgtacgtgcgggagcagctggctcgttttatcgaagggttcccccgaaacaccatcttattgaacctttttggatgggcagacgcgaccatacgggtggttgacgagacgcgacagctgctctacgacaaggtgctggtaaagaagcacgactcggtgagcagccgggtgtttgccatccaacacgagctgggctccggcaacgccaacaacacgcgggcagcgtttgagcatgcgatctgtagcgaggtgtgcaaacacaacgtgatgctctgggtttggtacgctggattctgccagtcacagaaacagctacaagccctggccaagcgcgtgttttaccgagcactggcgcactgtccgtggtccaaggaggtgatgatggaggcatttgtgacgctggtgcgcgggctggagccggacgagttgcggtccgtgtacgaaaccatgacgtccaaaggcttgcggattcacgtggacctcgacgagtttctggagaggacaagcatgggggctacgtag
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]