2024-04-19 12:46:14, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_044862396 3165 bp mRNA linear PLN 23-NOV-2021 DEFINITION Hirsutella rhossiliensis NRDE-2, necessary for RNA interference domain-containing protein (HRG_03925), partial mRNA. ACCESSION XM_044862396 VERSION XM_044862396.1 DBLINK BioProject: PRJNA774200 BioSample: SAMN20605485 KEYWORDS RefSeq. SOURCE Hirsutella rhossiliensis ORGANISM Hirsutella rhossiliensis Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreomycetidae; Hypocreales; Ophiocordycipitaceae; Hirsutella. REFERENCE 1 (bases 1 to 3165) AUTHORS Lin,R., Jiao,Y., Sun,X., Ling,J., Xie,B. and Cheng,X. TITLE A high-quality genome of the endoparasitic fungus Hirsutella rhossiliensis with a comparison of Hirsutella genomes reveals transposable elements contributing to genome size variation JOURNAL Unpublished REFERENCE 2 (bases 1 to 3165) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (23-NOV-2021) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3165) AUTHORS Lin,R., Jiao,Y., Sun,X., Ling,J., Xie,B. and Cheng,X. TITLE Direct Submission JOURNAL Submitted (24-SEP-2021) Department of Plant Protection, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, No. 12 Zhongguancun South Street, Haidian District, Beijing 100081, China COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_025408669). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..3165 /organism="Hirsutella rhossiliensis" /mol_type="mRNA" /strain="HR02" /db_xref="taxon:111463" /chromosome="Unknown" gene <1..>3165 /locus_tag="HRG_03925" /db_xref="GeneID:68353054" CDS 1..3165 /locus_tag="HRG_03925" /codon_start=1 /product="NRDE-2, necessary for RNA interference domain-containing protein" /protein_id="XP_044723422.1" /db_xref="GeneID:68353054" /translation="
MAAGDDDDGKLSVPKFSSFKPKGSIPSADAQSGRPKAEPREKEERRHRSSRQDYRSQHRHHNRHRRERPHREEEHPDSRDREQTPRRREEPKHLPDRGAVSSVPGLFVIDKKGDPLIRKYGLERSKVPSYYRLRGGRVLGTNGRLFLHHDGPREEFSLLFPGEKKPGSRDTGGLRSRDWQKRDPVKLRARRGKSPEDVGEGYLSLVNPKKRKRLHKNSDSSDAENQPSWRSIEGKAKAVRDVNSDAQESEGSSSESGVSDHDNPLKWKSIQLNRQVKDHPDDIEAWLELADHQDALLREGETIDDRAAENTAHSFTEIKVHLLESALTHASRPEDRQRVLVALMREGLKVWDKNVAAKKWSRLSDDELHSFELWKTHLDYSMSSIATFQYEDIKKMILKRLHQVVSRATKFFRDAGYKELAVAAWQGLLELNLFKPENAQSQSETLAAFEKFWEEESPRIGEAGAQGWRHRVESGGFEDAPWAVADKEPAETRLRDPYQAWAAAERARGNKASLPARTMDADTDDDPFRVVMYSDIEPWLFVIPRAGLPHATPQLIDAFLLSCGLPLALRSNDWLETAYHSQFLTGTSTDMRPQPAWDEAECQEASQRRPPSFSNGNCCARMSPELLFSRSSWFQYFDVAGKEHAIDLSWAETALKQLVHSTCISDLALYYLGLCFARKPDLIKKRAKALLTRYPTDVRLYNAYALAEFANGNVEIASMVLTSALESPELSAASTGFLLLKTWSWIELESGDKKMATKRLCACVDESLRKPKLGQDGLSPATILKARQAFTSNAQQCLYEGQWETASSHAECLALLSYLTGEGASEPISAGQGNISAAMDVVESMSKEMRLHECGNGASELLFQWASRMLYSHAAKGPFRRVYVREQLARFIEGFPRNTILLNLFGWADATIRVVDETRQLLYDKVLVKKHDSVSSRVFAIQHELGSGNANNTRAAFEHAICSEVCKHNVMLWVWYAGFCQSQKQLQALAKRVFYRALAHCPWSKEVMMEAFVTLVRGLEPDELRSVYETMTSKGLRIHVDLDEFLERTSMGAT"
misc_feature 811..1692 /locus_tag="HRG_03925" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
atggctgccggagacgacgatgacgggaagctgagcgtgcccaagttctcttctttcaagccaaaggggtcgattccaagcgcagatgctcagagcgggagacccaaagctgagccaagggaaaaggaggagcgtcgacatcgatccagcaggcaggattaccgttcgcaacatcggcaccataaccgtcatcgacgggagagaccgcatcgggaagaggagcatcccgactcccgagaccgcgagcaaacgccccgtcgtagggaagagcccaagcacctgcccgacagaggcgctgtatcttctgtccctggcctcttcgtcatcgataagaaaggcgatccgctcattagaaaatatgggctggagcggtccaaggtaccgtcatactatcgccttcgtggcggcagggttctgggcacaaatggacgtctcttcctgcaccacgacggaccaagagaggaattcagcctgctgtttcccggggaaaagaagcctggctcccgcgacactggtggcttaaggtcgagagactggcagaagcgtgatcctgtcaagctacgggcgaggagagggaaatcacctgaagacgtcggagaaggctacctgtctttggtgaatccaaagaaacgcaagagacttcacaaaaacagcgactcgtccgacgcagagaatcagccgtcgtggaggtcgattgaaggcaaagcgaaagcagtccgagacgtcaacagtgatgcgcaggagagcgagggctcgtcgagcgagtccggtgtttcggaccatgataatcccctgaaatggaaatccatccagctcaacagacaggtcaaagatcatccagacgacattgaagcctggctggagctggccgaccaccaggatgctttgctgcgggagggagagacgattgacgacagagccgccgagaacacggcacacagctttaccgagatcaaagtgcacctgctcgagtcggcactcacccacgcgtcacgccccgaagatcgccagagggtcctggtggctctcatgcgcgaaggtctcaaggtctgggacaaaaacgttgcggcaaaaaaatggtcccgactttccgacgacgagcttcacagttttgagttgtggaagacgcatctggactattccatgtcgagcatcgccacatttcaatacgaagatatcaagaagatgatactcaagcggcttcatcaggttgtgtcgcgagcgacgaagttcttccgcgatgccgggtacaaagagctcgccgtggcggcatggcaaggccttttggagctcaatttgttcaaaccggagaacgcgcagagccagagtgagacgctggccgcgtttgaaaagttttgggaggaagagagcccgagaatcggagaggcaggtgctcaaggttggagacaccgcgtcgagagcggtggattcgaagacgcgccctgggccgtggcggacaaagagcccgcagagacgcgtttgcgagatccataccaagcatgggcagcagccgagcgcgctcgagggaacaaggcttcgttgccagcgagaaccatggacgctgacaccgacgatgatcctttcagagtcgtgatgtactcggacattgaaccatggttattcgtcattccccgggctggattaccgcatgcgactccgcagctcattgatgcctttttgctatcctgcgggcttccgcttgcactcagatccaacgactggctggagacggcgtaccacagccagttcctgacggggaccagcactgatatgcgcccacagcccgcctgggacgaggcagaatgtcaggaagcttcgcagagaagaccgccttcgttcagcaatggaaactgctgcgcaaggatgtctcccgagttgcttttcagcaggagcagctggttccagtactttgacgtggccggcaaggaacacgctattgacttgtcttgggcggagacggcgttgaagcagctcgtccactcgacctgtatttcggaccttgccctgtactatctggggctctgctttgccaggaagcccgatctcatcaagaaacgagcgaaggctctcctgacgagatatcctaccgacgtgcggctctataatgcctatgctttggccgagtttgccaacggcaacgtcgagattgcgagcatggtgctaacatccgcactcgaatcgccagaactgtctgcggcatcaacgggatttctcctgctcaagacatggagctggatagagctggaaagtggtgacaagaagatggcaacgaagcgtttgtgtgcctgtgtcgatgagtccttgcgcaagcccaaactgggacaggatggtctgtcgcccgcgacgattctcaaggcccgtcaagcctttacgtccaatgcccagcagtgcctgtacgaagggcaatgggaaaccgccagcagccacgctgagtgtttggcgctcttgtcctatctaacaggcgaaggggcgagtgagccaatatcggcaggccaaggcaatatctcggctgccatggatgtcgtcgaatcgatgtcaaaggagatgcgattgcacgaatgcggaaacggtgccagcgagctgcttttccagtgggcttcgagaatgctttactctcatgctgccaaagggccatttcgaagagtgtacgtgcgggagcagctggctcgttttatcgaagggttcccccgaaacaccatcttattgaacctttttggatgggcagacgcgaccatacgggtggttgacgagacgcgacagctgctctacgacaaggtgctggtaaagaagcacgactcggtgagcagccgggtgtttgccatccaacacgagctgggctccggcaacgccaacaacacgcgggcagcgtttgagcatgcgatctgtagcgaggtgtgcaaacacaacgtgatgctctgggtttggtacgctggattctgccagtcacagaaacagctacaagccctggccaagcgcgtgttttaccgagcactggcgcactgtccgtggtccaaggaggtgatgatggaggcatttgtgacgctggtgcgcgggctggagccggacgagttgcggtccgtgtacgaaaccatgacgtccaaaggcttgcggattcacgtggacctcgacgagtttctggagaggacaagcatgggggctacgtag
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]