2024-05-20 10:50:36, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_043246901 1801 bp mRNA linear VRT 24-AUG-2021 DEFINITION PREDICTED: Puntigrus tetrazona ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1, 3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5b (st6galnac5b), transcript variant X3, mRNA. ACCESSION XM_043246901 VERSION XM_043246901.1 DBLINK BioProject: PRJNA753523 KEYWORDS RefSeq. SOURCE Puntigrus tetrazona (Sumatra barb) ORGANISM Puntigrus tetrazona Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Smiliogastrinae; Puntigrus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_056706.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Puntigrus tetrazona Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1801 /organism="Puntigrus tetrazona" /mol_type="mRNA" /isolate="hp1" /db_xref="taxon:1606681" /chromosome="8" /tissue_type="muscle" /dev_stage="mature" gene 1..1801 /gene="st6galnac5b" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns" /db_xref="GeneID:122350439" CDS 138..905 /gene="st6galnac5b" /codon_start=1 /product="alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5b isoform X3" /protein_id="XP_043102836.1" /db_xref="GeneID:122350439" /translation="
MHCKSCALVTSSGHMTGSGRGAEIDHKECVIRMNDAPTQGYQRDVGQRTSLRVVAHSSMQRVLRNRLELLNSSQNTCFIFWGPGNYMRQDGKGLVYNNLRLLKQMMPKLQVYIISRLKMLHFDELFKKETGKDRKRSNSWLSTGWFTMAIAMEMCDRINVYGMIPPEFCRSSNLEPSVPYHYYEPAGPDECKMYLSHEQGRHGSHHRFITEKRVFANWARLFNIHFYQPEWRPAPVTKNGTNTGVFHRLRTSVFF"
misc_feature 141..743 /gene="st6galnac5b" /note="Glycosyltransferase family 29 (sialyltransferase); Region: Glyco_transf_29; pfam00777" /db_xref="CDD:425864" ORIGIN
gttttactgacgcaccagaagatcagatgaagtcagatggacatcagatggacgttctacagcagaaaccatcccatttaaaaggttacagcagcatcattgatcataaggtgacttgctttcattagcctcttaggatgcattgcaaaagctgtgctttagtgaccagctctggtcacatgaccggaagtggccgaggtgcagagattgaccacaaggagtgcgtcatccgtatgaatgatgccccgacacaaggctaccagagggatgtgggccagcgaacgagtctgcgcgtggtggcacactccagcatgcagcgtgtgctacgaaaccgccttgagctgctcaactccagccagaacacctgctttatcttctgggggcctggaaactacatgcgccaagacgggaaaggcctcgtctacaacaacctgcgtctgctgaagcagatgatgcccaagctacaggtgtacatcatctccaggttaaagatgctgcattttgacgagctctttaagaaggaaacggggaaagatagaaaaaggtccaattcctggctgagcacaggctggttcactatggcgatcgctatggagatgtgtgacagaatcaacgtctatggcatgattcctcccgagttctgcaggtcgtccaacctcgagccatccgtgccgtatcactactatgagcctgcggggccagatgaatgtaaaatgtatctctcccacgagcagggacggcacggcagccaccatcgcttcatcacagagaaacgcgtctttgccaactgggcacgattgttcaacatacacttttatcaaccggagtggagaccggcacctgtcacaaaaaacggcacaaacaccggggtgtttcacagactcagaacctctgtgttcttttgaggacaaaccttgaacgttcgaactgcaaacgcattatgaataaaggttttcgacgattgtggattaaaagagcaaggtccaactttgctgaagattttaatcgcgaaagcgctgaagaccagcgttacaaagattatgtaaaatgtgacgagaacaaacagtgttttattcacattacttattaattgtaacagtgcggtccacgttggtttgtaatttagaaaactgggttactgtataattatatcacattttctgtttccagaaatgactagtttgatatctaggacatattgttctctgtgtgtaatttcatttaaattatacatagggcctcaataatttgtgccgcgtggagagtgtcaagcacataatgttaacattttttttcactcagtggcatccaaagagagccgtttacaaattgggctttttccaaatgacacttttatcatagggcctcattggatttgtcagatttcgttttttgtacagagatatttaaataagatattcatttcttaatacaaatctgtaaatacagctttatgctaatactataatgttatcagtagttctagtcttttctctaaatcagattcccagaacaacttttttttggttcatatttctacatacatttcatatttcctgacgcattgacattaactatcttaatcgagtcatatgctgacacaagctgctccgattaaaaatattataaatgacccgtgtttgccgctgttttgaaatactgtattaatttaaagaatcaactgtgaagattcatttcttcattaatgaggttttgatgcatgtttgagaccaccgcaacagtccgagagttatatacgatcacaccagtttgctcatcaagcaacataaccttttttttt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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