2024-05-05 00:52:06, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_042832723 5350 bp mRNA linear VRT 07-AUG-2021 DEFINITION PREDICTED: Centrocercus urophasianus major royal jelly protein 5-like (LOC122167847), transcript variant X15, mRNA. ACCESSION XM_042832723 VERSION XM_042832723.1 DBLINK BioProject: PRJNA752107 KEYWORDS RefSeq. SOURCE Centrocercus urophasianus (Greater sage-grouse) ORGANISM Centrocercus urophasianus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Tetraoninae; Centrocercus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024884966.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Centrocercus urophasianus Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5350 /organism="Centrocercus urophasianus" /mol_type="mRNA" /isolate="14NV4802_14NV808" /db_xref="taxon:9002" /chromosome="Unknown" /sex="female" /tissue_type="blood" /dev_stage="Adult; juvenile" gene 1..5350 /gene="LOC122167847" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns" /db_xref="GeneID:122167847" CDS 1349..2014 /gene="LOC122167847" /codon_start=1 /product="major royal jelly protein 5-like isoform X15" /protein_id="XP_042688657.1" /db_xref="GeneID:122167847" /translation="
MSLWSWVNQPEELKNFQNPLFEANSLVIWPSVAPQSLQLWEGIFLRWNRPSRYLDEAEEEMKRIIDYNRFLQDKVNSMKKQITQTETEGKVDEVDEVDKVDEMDKVDEMDKVDEVDKVDKVDEVDKVDKVDEVDKVDKVDEVDKVDEVDKVDEMDKVDEVDKVDEVDKVDKVDEVDKVDEVDKVDEVDKVDKVKKVDEVDEVDKVDEMDKVDEVDEVQENP"
polyA_site 5350 /gene="LOC122167847" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
tggtttgttctttctggacacaggtgagtttctcttgttgcagttgcagggtgtgctgcagtgctagggggattctccttctctcaggcacttgagcaggccaacattcagcacctgaatcctgctcagcttctgatgctgtgctgtaccagtggggcagctctgggcatgcactgagcagcactactggagttcaggagggtaggagccccaaaggacagttggcagctgccagtggtttcatttcctgtttttatcttaaacctgtctgttttcaggcctcctgagtccagtaagaccatgtctgaagacctctgaaggaacagagggaagaaatagtgctgatcatacaaataaatacaaatacaaataaaggcggggtgaagcctttcgaaacctctcagccctgaaagtaacctttgcttagaagagattcctgtcttctgcagggctgctgaactggtcagactgcacaactaagtcgggtttaaaaccaatcaaatgaaatttgaaagaatatgaatgttaggtgtaataacctctgtcatgtctgagtacatccacctgtgatcacaagcatgtttgaagtccagtgttaaggttgtgctgcctgaagtatttgtggggatggcaaatatcccacctgggtgacagctcgacaggatgagatctgctggaatcccacgactagaaacccttgtttaactccaggtggtgggtttgaccaaggaaaagacatttatttctgtgctctgatgcttcctgccaccagagggatctaatgggccatatccatagcactaattctgccttaagcctaacaccaggaattgcacttgatgttgacctaccatcgttcctcatgactcaatcttaacaagactgagtccttttcaaaattggcaggcaaactgtttttgtggtaggtgactgacatctggaaagaagaaggcagctaacttccacccaaattggaaatgacaaagaagagctggggaaacagcatttgagtaaactgcttttaggtttctaccaagctggtgccgtgctgatgagtggtactgaagggatgagcttgaattgttgatccattactttgtctgggctggtagcacatgggaaagcctgtggcagtctaatctgacaaagcaaaatgagttgtcttcttctggatcaagccctgggcaacctgatctatatgtgtccctattcactgcaggagagttaactagatgacctttaaagatcccttctaactctaaggattctgtgattcttagtttaaaactgaaagctaatttgttcctttgggtttgctaggtctaaactgaagctgcagcagaagactatgtccctgtggtcctgggtgaaccagcctgaagagctgaaaaatttccagaatcctctttttgaggccaacagccttgtcatctggccctctgtggccccacagagcctgcagctctgggaaggtatattcctgcgatggaacaggccttccagatacctagatgaagccgaggaagaaatgaagaggattatagactacaacaggtttcttcaggataaggttaactcaatgaagaagcagataacgcagacagaaacagagggcaaggtggacgaggtggatgaggtggacaaggtggatgagatggacaaggtggatgagatggacaaggtggatgaagtagacaaggtggacaaggtggacgaggtggacaaggtggacaaggtggatgaagtagacaaggtggacaaggtggacgaggtggacaaggtggacgaggtggacaaggtggatgagatggacaaggtggatgaagtagacaaggtggatgaagtagacaaggtggacaaggtggacgaggtggacaaggtggatgaggtggacaaggtggatgaagtagacaaggtggacaaggtgaaaaaggtggatgaggtggatgaggtggacaaagtggatgagatggacaaggtggatgaggtagacgaggtgcaggagaacccgtgagctgccagggctttgcctcaggtctttcttttccagttccttttaggttaaagattaaacgtggaaagtgcttgtattgcagagtcctctggtacagctgaccctcagtcctccacctctgaaaccttcacttcacacaatgtacctccctgctttttgggagggaattttcttttgtttacagaaggtacaactgggcatagtttcctctcctggcagctttcttgtctcttacttgtgcagtaaaagctggaactcttacctccacccagctgtatggatgaccatgatgggccaagagatgaaatgttacagatttattttggactttgatcttttttattttatttttgctgaactttctaaacattctttgcgggattaaaagacaaagttatgtatagatgggttaaaggcattctatctgagagcaccttttctcctcaagtagttagggcagcttagttccttagtttcctagaaaggttataatctaaccacaagaccaaccagtccaaacagtgctttcagtagccttcacatctcagacttgggggttttctggtttgggagcagtaggttacataccaggtaagaaatttcagtgcaatacagaactgaatagggattctgctgctaatgtttgagctatgaccttcaggtggagttgttcctcatggacaagtaactcctaaggaataaaaaatattttttattctacctggaaaacaaaaaggtggtgattgctggaggtgtattcacttgctgagcaaagcaagggacttggagctgtcctcttcagagccacactaccctcttgaacttctgtttctatacatttgaatagattcacggtgcacaagcagcacttaatttactgctcagcaaaacattattgctccattttgtttcttctctcatgctcttcctgtgtgctttgtcaaacatccaaagctaaagctgagagttggcgtgatccagcataccaggtatgttgcagatgggaaggctgtcacattacagaagtgttaacagcagctgcaaatgacttacactaaaactgttcaaagatgctagagaagattttcttccaaatcagttcactttgtagttatttgtctctgtggctgtaatctgctattttgtaaggctattctcttttttctaagtctctctccttcagataacaatggtgtggtgcattaactcattggtgtttgtccagctaggtttcactgatagctacccataactgaggagacttgaaatcaagcagtgcatgtggctgggattactgtaagctgctcactgttagcctgttgctgctgaaaccagtgcagctgcatgaggtcaatcttgacctctttgaaaagtgttgaattcaagtgtcatttttttgatgctttggattgaagctgcctttgcttaaaagccacttagcataaggatatgaaaatagaggctccttagttgtcttgggagtatctggagagcagccttctgtgtaacacctaaagatacctttttaaaaggtgttccataatgaaggagactgatattaagcactaccttaatgccttttgcttcagtccatatctccttaattttcttcttgagtagcctaaacttctaagtcctgtggcttaaacacttcattgtaatatctgtttcttcctactctcgtagagcaaacttgttcccaaggttacagctgacatagggaacacttgtatttatcagagtggctgatgacctgtagcacacaacaagggagatgcaagctggccatgcctttcttccatttccaggctctggatttttggggctgcctgcttatattgcaaacgaaagccctgaatattactgctcacccttcagagctatggctgtgctgtctgcagctgcctggatgttgtactcccatcccattcagaacttctgctgttgctgtatgtccaaaacacatcatgagtcagacgagaaggatttgaaagggactgttttccccataataggctgtacataaaacacacttaaaggttatgcaatttcctaacatagtaattatatattgagctaaataatagagaagcaaagaaggctgttctcttttcttttttaatgtaattgcttggctgctgtagtctcttatctcttaccgaaactgcaggcatctggggagatggcatggatttgcagtcttcatgtgaaaatgacactgtcattgtgagcagtggcagcaggtggttcttttattccccctcccagatcttctgcaaatagtcccctttgtgcagtgttacagtgctgctgggtgctgtgtggtagagctcacccaacgtgtggaccccacgcatcctccagggaaaacaaacagttctcagatgtctcatggcacctgcagttcttttcacctttccattccagtgcttcccagactgtggagcactccagctgtttgctagcttatgtctatcacacttattcccttgctttgatcagcttgcttcccctcagcctgcagggctcaccccgtggagttaaccacactctgctgtatcttcccaggctgtgagtgtgatgctgctttgcacagctgctgggatgcccttctgttccttagcatatagtctttgtgggcccttcccccgggctcactcagacacgctgccattaaccaaaagaaaaagggaaaaggaatcaaacttgcacaagttttcacgaagacaaagggaaatatgtaccttcaatattttgattgtattgatctaactcttgaatgtggagacctgttgaagtgcactgttgtccacgttgcgtgcaacggaactgaaattgcactgtgcagcatgctggcttctcaatgtgctttgctaaagccttggaaggtgctgtcatgtacaggttcctgtacaagggaaaatgtctgtaatagcactcctttcttgtaactgtgacactgaatagcactgcgtgatgtgtgctgtctatctgtcaggccgtgcggactgaagtgatgagtgcacttctgtctcaacatctggaatttgctaattggactcggctgctgcatcaatcttcatttgaaaactaaatatcagggctgggagctgtgtgctgttgttagatgtatgctgaacgtgtacagaatcctggctgctgtggcgttgaatatactgaatataacaaatccgagggaagaaaaattgactgtggttgaaatggctcagccattggaggggggagaaacagacacaaaatggctgtaagcttcactgtagatatgttgagaagataatagaattgtctgttcaaattaaaatgttccaattaaaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]