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2024-05-05 04:03:21, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_042832714            5420 bp    mRNA    linear   VRT 07-AUG-2021
DEFINITION  PREDICTED: Centrocercus urophasianus major royal jelly protein
            5-like (LOC122167847), transcript variant X7, mRNA.
ACCESSION   XM_042832714
VERSION     XM_042832714.1
DBLINK      BioProject: PRJNA752107
KEYWORDS    RefSeq.
SOURCE      Centrocercus urophasianus (Greater sage-grouse)
  ORGANISM  Centrocercus urophasianus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Tetraoninae; Centrocercus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_024884966.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Centrocercus urophasianus Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5420
                     /organism="Centrocercus urophasianus"
                     /mol_type="mRNA"
                     /isolate="14NV4802_14NV808"
                     /db_xref="taxon:9002"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="Adult; juvenile"
     gene            1..5420
                     /gene="LOC122167847"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 4 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:122167847"
     CDS             1365..2084
                     /gene="LOC122167847"
                     /codon_start=1
                     /product="major royal jelly protein 5-like isoform X7"
                     /protein_id="XP_042688648.1"
                     /db_xref="GeneID:122167847"
                     /translation="
MSLWSWVNQPEELKNFQNPLFEANSLVIWPSVAPQSLQLWEGIFLRWNRPSRYLDEAEEEMKRIIDYNRFLQDKVNSMKKQITQTETEGKVDEVDEVDKVDEMDKVDEMDKVDEVDKVDKVDEVDKVDKVDEMDKVDEVDKVDKVDEMDKVDKVDEVDKVDKVDEVDKVDKVDEVDKVDEVDKVDEMDKVDEVDKVDEVDKVDEVDKVDKVKKVDEVDEVDKVDEMDKVDEVDEVQENP"
     misc_feature    <1515..>1928
                     /gene="LOC122167847"
                     /note="MAEBL; Provisional; Region: PTZ00121"
                     /db_xref="CDD:173412"
     polyA_site      5420
                     /gene="LOC122167847"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
aaaaaagtgagggtgatggtttgttctttctggacacaggtgagtttctcttgttgcagttgcagggtgtgctgcagtgctagggggattctccttctctcaggcacttgagcaggccaacattcagcacctgaatcctgctcagcttctgatgctgtgctgtaccagtggggcagctctgggcatgcactgagcagcactactggagttcaggagggtaggagccccaaaggacagttggcagctgccagtggtttcatttcctgtttttatcttaaacctgtctgttttcaggcctcctgagtccagtaagaccatgtctgaagacctctgaaggaacagagggaagaaatagtgctgatcatacaaataaatacaaatacaaataaaggcggggtgaagcctttcgaaacctctcagccctgaaagtaacctttgcttagaagagattcctgtcttctgcagggctgctgaactggtcagactgcacaactaagtcgggtttaaaaccaatcaaatgaaatttgaaagaatatgaatgttaggtgtaataacctctgtcatgtctgagtacatccacctgtgatcacaagcatgtttgaagtccagtgttaaggttgtgctgcctgaagtatttgtggggatggcaaatatcccacctgggtgacagctcgacaggatgagatctgctggaatcccacgactagaaacccttgtttaactccaggtggtgggtttgaccaaggaaaagacatttatttctgtgctctgatgcttcctgccaccagagggatctaatgggccatatccatagcactaattctgccttaagcctaacaccaggaattgcacttgatgttgacctaccatcgttcctcatgactcaatcttaacaagactgagtccttttcaaaattggcaggcaaactgtttttgtggtaggtgactgacatctggaaagaagaaggcagctaacttccacccaaattggaaatgacaaagaagagctggggaaacagcatttgagtaaactgcttttaggtttctaccaagctggtgccgtgctgatgagtggtactgaagggatgagcttgaattgttgatccattactttgtctgggctggtagcacatgggaaagcctgtggcagtctaatctgacaaagcaaaatgagttgtcttcttctggatcaagccctgggcaacctgatctatatgtgtccctattcactgcaggagagttaactagatgacctttaaagatcccttctaactctaaggattctgtgattcttagtttaaaactgaaagctaatttgttcctttgggtttgctaggtctaaactgaagctgcagcagaagactatgtccctgtggtcctgggtgaaccagcctgaagagctgaaaaatttccagaatcctctttttgaggccaacagccttgtcatctggccctctgtggccccacagagcctgcagctctgggaaggtatattcctgcgatggaacaggccttccagatacctagatgaagccgaggaagaaatgaagaggattatagactacaacaggtttcttcaggataaggttaactcaatgaagaagcagataacgcagacagaaacagagggcaaggtggacgaggtggatgaggtggacaaggtggatgagatggacaaggtggatgagatggacaaggtggatgaagtagacaaggtggacaaggtggacgaggtggacaaggtggacaaggtggatgagatggacaaggtggatgaagtagacaaggtggacaaggtggatgagatggacaaggtggacaaggtggacgaggtggacaaggtggacaaggtggatgaagtagacaaggtggacaaggtggacgaggtggacaaggtggacgaggtggacaaggtggatgagatggacaaggtggatgaagtagacaaggtggatgaggtggacaaggtggatgaagtagacaaggtggacaaggtgaaaaaggtggatgaggtggatgaggtggacaaagtggatgagatggacaaggtggatgaggtagacgaggtgcaggagaacccgtgagctgccagggctttgcctcaggtctttcttttccagttccttttaggttaaagattaaacgtggaaagtgcttgtattgcagagtcctctggtacagctgaccctcagtcctccacctctgaaaccttcacttcacacaatgtacctccctgctttttgggagggaattttcttttgtttacagaaggtacaactgggcatagtttcctctcctggcagctttcttgtctcttacttgtgcagtaaaagctggaactcttacctccacccagctgtatggatgaccatgatgggccaagagatgaaatgttacagatttattttggactttgatcttttttattttatttttgctgaactttctaaacattctttgcgggattaaaagacaaagttatgtatagatgggttaaaggcattctatctgagagcaccttttctcctcaagtagttagggcagcttagttccttagtttcctagaaaggttataatctaaccacaagaccaaccagtccaaacagtgctttcagtagccttcacatctcagacttgggggttttctggtttgggagcagtaggttacataccaggtaagaaatttcagtgcaatacagaactgaatagggattctgctgctaatgtttgagctatgaccttcaggtggagttgttcctcatggacaagtaactcctaaggaataaaaaatattttttattctacctggaaaacaaaaaggtggtgattgctggaggtgtattcacttgctgagcaaagcaagggacttggagctgtcctcttcagagccacactaccctcttgaacttctgtttctatacatttgaatagattcacggtgcacaagcagcacttaatttactgctcagcaaaacattattgctccattttgtttcttctctcatgctcttcctgtgtgctttgtcaaacatccaaagctaaagctgagagttggcgtgatccagcataccaggtatgttgcagatgggaaggctgtcacattacagaagtgttaacagcagctgcaaatgacttacactaaaactgttcaaagatgctagagaagattttcttccaaatcagttcactttgtagttatttgtctctgtggctgtaatctgctattttgtaaggctattctcttttttctaagtctctctccttcagataacaatggtgtggtgcattaactcattggtgtttgtccagctaggtttcactgatagctacccataactgaggagacttgaaatcaagcagtgcatgtggctgggattactgtaagctgctcactgttagcctgttgctgctgaaaccagtgcagctgcatgaggtcaatcttgacctctttgaaaagtgttgaattcaagtgtcatttttttgatgctttggattgaagctgcctttgcttaaaagccacttagcataaggatatgaaaatagaggctccttagttgtcttgggagtatctggagagcagccttctgtgtaacacctaaagatacctttttaaaaggtgttccataatgaaggagactgatattaagcactaccttaatgccttttgcttcagtccatatctccttaattttcttcttgagtagcctaaacttctaagtcctgtggcttaaacacttcattgtaatatctgtttcttcctactctcgtagagcaaacttgttcccaaggttacagctgacatagggaacacttgtatttatcagagtggctgatgacctgtagcacacaacaagggagatgcaagctggccatgcctttcttccatttccaggctctggatttttggggctgcctgcttatattgcaaacgaaagccctgaatattactgctcacccttcagagctatggctgtgctgtctgcagctgcctggatgttgtactcccatcccattcagaacttctgctgttgctgtatgtccaaaacacatcatgagtcagacgagaaggatttgaaagggactgttttccccataataggctgtacataaaacacacttaaaggttatgcaatttcctaacatagtaattatatattgagctaaataatagagaagcaaagaaggctgttctcttttcttttttaatgtaattgcttggctgctgtagtctcttatctcttaccgaaactgcaggcatctggggagatggcatggatttgcagtcttcatgtgaaaatgacactgtcattgtgagcagtggcagcaggtggttcttttattccccctcccagatcttctgcaaatagtcccctttgtgcagtgttacagtgctgctgggtgctgtgtggtagagctcacccaacgtgtggaccccacgcatcctccagggaaaacaaacagttctcagatgtctcatggcacctgcagttcttttcacctttccattccagtgcttcccagactgtggagcactccagctgtttgctagcttatgtctatcacacttattcccttgctttgatcagcttgcttcccctcagcctgcagggctcaccccgtggagttaaccacactctgctgtatcttcccaggctgtgagtgtgatgctgctttgcacagctgctgggatgcccttctgttccttagcatatagtctttgtgggcccttcccccgggctcactcagacacgctgccattaaccaaaagaaaaagggaaaaggaatcaaacttgcacaagttttcacgaagacaaagggaaatatgtaccttcaatattttgattgtattgatctaactcttgaatgtggagacctgttgaagtgcactgttgtccacgttgcgtgcaacggaactgaaattgcactgtgcagcatgctggcttctcaatgtgctttgctaaagccttggaaggtgctgtcatgtacaggttcctgtacaagggaaaatgtctgtaatagcactcctttcttgtaactgtgacactgaatagcactgcgtgatgtgtgctgtctatctgtcaggccgtgcggactgaagtgatgagtgcacttctgtctcaacatctggaatttgctaattggactcggctgctgcatcaatcttcatttgaaaactaaatatcagggctgggagctgtgtgctgttgttagatgtatgctgaacgtgtacagaatcctggctgctgtggcgttgaatatactgaatataacaaatccgagggaagaaaaattgactgtggttgaaatggctcagccattggaggggggagaaacagacacaaaatggctgtaagcttcactgtagatatgttgagaagataatagaattgtctgttcaaattaaaatgttccaattaaaa
//

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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]