2024-04-30 07:53:01, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_042772381 2175 bp mRNA linear VRT 27-JUL-2021 DEFINITION PREDICTED: Cyprinus carpio uncharacterized LOC109089169 (LOC109089169), transcript variant X2, mRNA. ACCESSION XM_042772381 VERSION XM_042772381.1 DBLINK BioProject: PRJNA745992 KEYWORDS RefSeq. SOURCE Cyprinus carpio (common carp) ORGANISM Cyprinus carpio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Cyprinus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_056587.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cyprinus carpio Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2175 /organism="Cyprinus carpio" /mol_type="mRNA" /isolate="SPL01" /db_xref="taxon:7962" /chromosome="A16" /tissue_type="muscle" /dev_stage="adult" gene 1..2175 /gene="LOC109089169" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:109089169" CDS 91..1812 /gene="LOC109089169" /codon_start=1 /product="uncharacterized protein LOC109089169 isoform X2" /protein_id="XP_042628315.1" /db_xref="GeneID:109089169" /translation="
MMKSFQLSYFQLLCLLTAALLECKAETERPCKQVYQLNIRHLHGDSMSISCQTTPHPLESLTVKLRSIIPLKDILNYPDTSSASEHQRWSVRNDAGNVTFDLKDIRSSDGGLYDCQVYKDQDCLHSTRFNLSVIMCETLNSVHATLNSSVLLPCSEHPLQNRTEQVTWKVVSGHQLTDVNQYRAPYKPSSSTEKPPDPLYERARQLKNGSLLIRNAVHTDELWYRCRVNGKTCYEIKLVMKAETERPCKQVYQLNISHLHGDSMSISCQTTTHPLESLTVKLRSIIPLKDILNYPDTSSASEHQRWSVRNDAGNVIFDLKDIRSSDGGFYDCQVYKDQDCLHTTRFNLSIIMCKTLNSVHATLNSSVLLPCSEHPLHNRTEQVTWKVVSGHQSTDINQYRAPYKPSSSTEKPPDPLYERARQLKNGSLLVRNAGHTDELLYRCRVNEKTCYEIKLVIKDDKTFYSTILETLSTTLLSTTDAPTPAADNTAGQTEGNNHEESETVTANLTVVVMTTVVSLCVLISLTICVILYFKKRRRKTNSQTELNCWSTIYYSNISGGVNGLFYSLDEHNT"
misc_feature 220..489 /gene="LOC109089169" /note="Immunoglobulin like; Region: IG_like; smart00410" /db_xref="CDD:214653" misc_feature 511..774 /gene="LOC109089169" /note="Immunoglobulin domain; Region: Ig; cl11960" /db_xref="CDD:448366" misc_feature 538..552 /gene="LOC109089169" /note="Ig strand B [structural motif]; Region: Ig strand B" /db_xref="CDD:409353" misc_feature 583..597 /gene="LOC109089169" /note="Ig strand C [structural motif]; Region: Ig strand C" /db_xref="CDD:409353" misc_feature 715..729 /gene="LOC109089169" /note="Ig strand E [structural motif]; Region: Ig strand E" /db_xref="CDD:409353" misc_feature 757..774 /gene="LOC109089169" /note="Ig strand F [structural motif]; Region: Ig strand F" /db_xref="CDD:409353" ORIGIN
tttggagtacctgaaaacaactctgtgaaagtgaagtcatgtggcctgtgctcatatagagtccagctgtcctgcagtgagcatctgtatatgatgaagagttttcagctttcttatttccagctcctgtgtcttctaacagcagcgttattagaatgtaaagctgaaacagagagaccctgcaagcaggtttatcagttgaacataaggcatttacacggtgacagcatgtctatttcttgccaaacaacaccccacccgctggagtctctaacagtcaaactacgcagtatcatcccgcttaaagacatcctgaattatccagacacctcttcagcatcagagcaccagagatggtctgtgaggaatgatgctggaaatgttacatttgatctgaaagacatcagatcatccgatggtggcctttatgactgtcaggtctacaaggatcaggactgccttcattcaactcgatttaacctgagtgttataatgtgtgaaactttgaactctgtccatgcaacgctaaactcgtcagtgttgctgccgtgctctgaacatcctctacaaaacagaactgaacaagtcacttggaaagttgttagtggtcatcaattaacggatgtaaaccagtatcgagctccatacaagccctccagcagcacagagaaaccaccggaccccctgtatgagagagcgagacaactaaagaacggatctttgcttataaggaatgcagtacacactgatgaattgtggtatcggtgcagagtgaatggaaaaacctgctatgagattaagctggtgatgaaagctgaaacagagagaccctgcaagcaggtttatcagttgaacataagccatttacacggtgacagcatgtctatttcttgccaaacaacaacgcacccactggagtctctaacagtcaaactacgcagtatcatcccgcttaaagacatcctgaattatccagacacctcttcagcatcagagcaccagagatggtctgtgaggaatgatgctggaaatgttatatttgatctgaaagacatcagatcatccgatggtggtttttatgactgtcaggtctacaaggatcaggactgccttcatacaactcgatttaacctgagtattataatgtgtaaaactttgaactctgtccatgcaacgctaaactcgtcagtgttgctgccgtgctctgaacatcctctacacaacagaactgaacaagtcacttggaaagttgttagtggtcatcaatcaacagatataaaccagtatcgagctccatacaagccctccagcagcacagagaaaccaccggaccccctgtatgagagagcgagacaactaaagaacggatctttgcttgtaaggaatgcaggacacactgatgaattgttgtatcggtgcagagtgaatgaaaaaacctgctatgagattaagctggtgataaaagatgataaaacattttattcaacaattctggaaacactttccacaacattgttatccaccacagatgctccaaccccagctgctgacaatacggctggccaaactgaaggcaacaaccatgaagagagtgaaacagtgacagctaatctgacagtagtagtgatgaccacagtagtgtctctgtgtgtcctcatatcactgaccatttgtgtcattctttatttcaaaaaacgaagacgcaaaaccaacagccaaactgaattgaactgctggtctaccatatattattccaacatttcaggaggggttaatggtctgttctattctttagatgaacataacacctgaatcatcaccacctttgttgtgaacaaacagaagctccagcatgtaaagcagaggacagatatttaatgtgcttttgttgttgttgttgtttttctttaaataagggatgactctcaatctggggaaaactccttaatatcaaatttcatgctgcttctatagcaaaagttcactttttaattgaatgatgatttatagaacagttggttactgtcaaaagacaaaacgtaacggggtgtgatgcatttttatacaggacacactgtaagagacacaaatggcaactcttctgtagaatgactcttggattttcttattttttttctgaacatattctttgatataatgtttgtattgcaataa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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