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2024-03-29 07:15:46, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_042503184            3436 bp    mRNA    linear   VRT 19-JUL-2021
DEFINITION  PREDICTED: Plectropomus leopardus palmitoyltransferase ZDHHC14-like
            (LOC121955303), transcript variant X1, mRNA.
ACCESSION   XM_042503184
VERSION     XM_042503184.1
DBLINK      BioProject: PRJNA744194
KEYWORDS    RefSeq.
SOURCE      Plectropomus leopardus (leopard coralgrouper)
  ORGANISM  Plectropomus leopardus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Eupercaria; Perciformes; Serranoidei; Serranidae;
            Epinephelinae; Epinephelini; Plectropomus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_056478.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Plectropomus leopardus Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3436
                     /organism="Plectropomus leopardus"
                     /mol_type="mRNA"
                     /isolate="mb"
                     /db_xref="taxon:160734"
                     /chromosome="16"
                     /tissue_type="muscle"
     gene            1..3436
                     /gene="LOC121955303"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 21 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:121955303"
     CDS             615..2147
                     /gene="LOC121955303"
                     /codon_start=1
                     /product="palmitoyltransferase ZDHHC14-like isoform X1"
                     /protein_id="XP_042359118.1"
                     /db_xref="GeneID:121955303"
                     /translation="
MSQIQHAAPDQQQQSGPDAQIRTRSPEPAEHPGPGPGHRGRTPRRKWQLFPGRNRFYCDGRIMMARQSGVFYLTLLLILLTCGLFFTFDCPFLASNLTPAIPAVGGVLFIFVMGMLFRASFTDPGVLPRATPDEAADLERQIDTAGCSRPPPRTREVLINGQTVKLKYCFTCKIFRPPRASHCSLCDNCVERFDHHCPWVGNCVGRRNYRFFYLFILSLSFLTIFIFAFVITHVIIRSNRTGFLSALKDSPASVLEVVVCFFSVWSIVGLSGFHTYLISSNQTTNEDIKGSWSTKRGKDNYNPYSYGNILTNCCAALCGPLPPSLIDRRGLIQSDTPQTVSQSSQSNGTSTYASTQLTSHMCDQDQCLQSTKFVLQAAATPLLHSDPVVLAPLPGKTTTLGGPCAYLAPSQPSLPSCGGDVLTLRDAAVDSHCHHHLHHHHHHHHHHFVSPEETPCSTPQGALPCPAHLHLHPHPHPHPPVPAPAALYDPACQDALHEDSVRGLVKLSSV"
     misc_feature    1110..1481
                     /gene="LOC121955303"
                     /note="DHHC palmitoyltransferase; Region: DHHC; pfam01529"
                     /db_xref="CDD:396215"
ORIGIN      
atattagtcatatcaatcaaacatgaagttgagagtatttttgcaggttttgttgaactgagtctgtgtttcagtccgtttctgtggtctgtattttgtgttctgctcagagtggatcgtctccccaatagaggatctgtgcaggagctccagcaggtctgcggaggatcaggatgctcctcacgtcctcctcctcctcctgctcctcctcctgctcctcctcctcctcctcctcctcctcctcctcctcctcccgctcctcctcaccgacacagaccctctaagcctccgccgtctgccagtccggacccgctccctcccggtcccgctctgtcgtccagatccggatccgctgtcccggatccgtgcgctgcattatgtgagggggacgctgcgcgggcacgaggcgcgggtgttttggtgggctcgtggatttcggaccctgcgcgcgtgcgtttgtttacgaaatatttcaaaataaaagcggaggattcggactgaaacatgtcggatttattctgtgtccagaaaccagaccgagcaccggcggcacgcgcacggctctgacgtcaccggcggtcaccggtcacctgcgggctcacctgagaggacacatgtctcagatccagcatgcggcaccggaccagcagcagcagtccggaccggacgcccagatccgcacccgcagccccgagccggccgagcaccccggacccggacccggacaccgcggccggaccccccgcaggaagtggcagctgttcccgggaaggaaccggttctactgcgacggcaggatcatgatggcgcgacagagcggcgtcttctacctgacgctgctgctcatcctgctcacctgcggactcttcttcaccttcgactgtcccttcctggcatccaacctcaccccggccatcccggcggttggcggcgtcctcttcatctttgtgatggggatgctgttcagggcgagcttcaccgaccccggcgtcctgccccgggccacgccggacgaggccgccgacctggaaaggcaaatcgacacggccggctgctccagaccgcctcctcgcacccgagaggtcctgatcaacggacagacggtcaaactgaaatactgcttcacctgtaagatcttcagaccgccgcgagcgtcgcactgcagcctctgtgacaactgcgtcgagcgtttcgaccatcactgtccgtgggttgggaactgcgtcggacggaggaactaccgcttcttctacctgttcatcctctcgctctccttcctcaccatcttcatcttcgcctttgtcatcacgcatgtcatcatcagatcgaaccggacgggtttcctgagcgcgctcaaagacagcccggccagcgtgctggaggtggtggtgtgtttcttctccgtctggtcgatcgtgggtctgtcggggttccacacgtacctgatcagctccaaccagaccaccaacgaggacattaaagggtcgtggtccaccaagagagggaaggataactacaacccctacagctacggaaacatcctgaccaactgctgcgccgccctgtgtggccccctgccccccagtctgattgacaggagaggactcatccagtctgataccccgcagaccgtctcccagtcctcccagtccaacggcaccagcacctacgcctccacccagctgaccagtcacatgtgtgaccaggatcagtgtcttcagagtacgaagttcgtcctccaggccgcggcgactccgctgctccatagtgaccccgtcgtcctggccccactgccggggaagaccaccacgctggggggcccctgtgcctacctggccccgtcccagccctccctgccgtcctgtgggggggacgttctgaccctgagagacgccgccgtcgactcgcactgccaccaccacctccatcatcaccaccatcaccaccaccaccacttcgtcagcccggaggagacgccgtgctccacaccgcagggcgccctgccctgccccgcccacctgcacctgcacccgcacccgcacccgcacccccctgtccccgcgcccgccgccctgtacgacccggcctgtcaggacgctctgcacgaggactcggtcagagggctggtcaaactcagctccgtgtgagcgaccacagcgatctctgcgcctccgtctgatggagtcagattctgattcagacgcttcgcccacagtaaactgctctcggcggaccgggaccgatgtgtggtttttatattgtcggcgtttctgtggattaaggagaactgaccgttactctcagaggagccgacagacccgacgcgaatcttcaggttttcatttcattctgtggacataaaaaaggaagccggaccgagtttccaaaataaactccttcagacacgagttcatcggagcaacaacactgccagacgctcagctcacctcagcggtccacactgattttaatcggtccagccaaaaacttcagccagaatccacgcagaattctcacgtcaagttcaactttggtgacttcagagaggaaactggtcgccgtgtttttgtacgtcctgacggagccgagctcttctgctcgtggagcggcgccggtgtgcccacatggaccgggattaaccgctaaccgcctcttcgttgtttgccccagtcacgtttctctgaccgtttctatccgtgttcctgaaaacacggaggcttgacacacaggagacctccgcggtcagctcagtttcacgtacggagttcagttacggcccacaacacgatttgtgagctccgagaccttcgaccaccaaattctaataagtttgccattgagttcaactggacctttttgactcatcccgttcacgaaaatgaccgatgcaaggtcacagtgaccttgaccttgacctttaacctttgacaaccaaattctgatcagacagagatttgtgtcaaatttgaacaatttttgagactccctcaaaaattcttgacatattgttttcaggattatgagacagatacaaggtcacagtgacctttaacctttgaccaccaaattgtaatcagtttattgcagagtccgagtggctgtttgtgctatatttgaaagaattccctcaaggtgtttttgacatatcacgtcaacaagaatgacatggaggtgaggtcaccgtgacctttgaccaccaaaatctaatcaaaccattgctgagtccaagtggaagtttgggccaaatgtgaagaaataccctcaagtttttctttataaatgagtcagacgcaagatcacagtgatctttgaccttcaacctctaaaatctaaccagattattcttaagttcctgtcgctgtttgtgccaagtttgaaaaaattccctcaaggcgttcttgagatattttgttcacaagaatgaaatggacacaag
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]